data_7CKI # _model_server_result.job_id H8GVRzN3F4ENRXVagptLQg _model_server_result.datetime_utc '2024-10-20 12:38:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7CKI # _exptl.entry_id 7CKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.286 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5~{S},6~{R})-5-methyl-7-thia-2-azatricyclo[6.3.1.0^{4,12}]dodeca-1(12),3,8,10-tetraene-6-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CKI _cell.length_a 61.988 _cell.length_b 61.988 _cell.length_c 218.066 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 11 A SER 11 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc2 A OE1 GLN 49 A GLN 49 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc3 A OH TYR 203 A TYR 203 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc4 A O PRO 236 A PRO 236 1_555 G K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O1B ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O2G ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 C MG MG . A MG 402 1_555 E O1A ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C12 H11 N O2 S' _chem_comp.formula_weight 233.286 _chem_comp.id 9E0 _chem_comp.mon_nstd_flag . _chem_comp.name '(5~{S},6~{R})-5-methyl-7-thia-2-azatricyclo[6.3.1.0^{4,12}]dodeca-1(12),3,8,10-tetraene-6-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C11 9E0 doub 1 n n C12 C10 9E0 sing 2 n n C11 O02 9E0 sing 3 n n C11 C09 9E0 sing 4 n n S01 C09 9E0 sing 5 n n S01 C05 9E0 sing 6 n n C10 C09 9E0 sing 7 n n C10 C07 9E0 sing 8 n n C05 C02 9E0 doub 9 n y C05 C06 9E0 sing 10 n y C07 C06 9E0 sing 11 n y C07 C08 9E0 doub 12 n y C02 C01 9E0 sing 13 n y C06 C04 9E0 doub 14 n y C08 N01 9E0 sing 15 n y C01 C03 9E0 doub 16 n y C04 C03 9E0 sing 17 n y C04 N01 9E0 sing 18 n y C01 H1 9E0 sing 19 n n C02 H2 9E0 sing 20 n n C03 H3 9E0 sing 21 n n C08 H5 9E0 sing 22 n n C09 H7 9E0 sing 23 n n C10 H8 9E0 sing 24 n n C12 H9 9E0 sing 25 n n C12 H10 9E0 sing 26 n n C12 H11 9E0 sing 27 n n N01 H12 9E0 sing 28 n n O02 H13 9E0 sing 29 n n # _atom_sites.entry_id 7CKI _atom_sites.fract_transf_matrix[1][1] 0.016132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9E0 A 1 401 329 9E0 CMC . C 3 MG A 1 402 331 MG MG . D 4 K A 1 403 333 K K . E 5 ATP A 1 404 334 ATP ATP . F 4 K A 1 405 335 K K . G 4 K A 1 406 336 K K . H 6 HOH A 1 501 125 HOH HOH . H 6 HOH A 2 502 150 HOH HOH . H 6 HOH A 3 503 45 HOH HOH . H 6 HOH A 4 504 83 HOH HOH . H 6 HOH A 5 505 93 HOH HOH . H 6 HOH A 6 506 111 HOH HOH . H 6 HOH A 7 507 78 HOH HOH . H 6 HOH A 8 508 32 HOH HOH . H 6 HOH A 9 509 57 HOH HOH . H 6 HOH A 10 510 108 HOH HOH . H 6 HOH A 11 511 103 HOH HOH . H 6 HOH A 12 512 68 HOH HOH . H 6 HOH A 13 513 145 HOH HOH . H 6 HOH A 14 514 116 HOH HOH . H 6 HOH A 15 515 11 HOH HOH . H 6 HOH A 16 516 138 HOH HOH . H 6 HOH A 17 517 46 HOH HOH . H 6 HOH A 18 518 4 HOH HOH . H 6 HOH A 19 519 5 HOH HOH . H 6 HOH A 20 520 52 HOH HOH . H 6 HOH A 21 521 157 HOH HOH . H 6 HOH A 22 522 53 HOH HOH . H 6 HOH A 23 523 16 HOH HOH . H 6 HOH A 24 524 76 HOH HOH . H 6 HOH A 25 525 22 HOH HOH . H 6 HOH A 26 526 58 HOH HOH . H 6 HOH A 27 527 29 HOH HOH . H 6 HOH A 28 528 23 HOH HOH . H 6 HOH A 29 529 14 HOH HOH . H 6 HOH A 30 530 8 HOH HOH . H 6 HOH A 31 531 24 HOH HOH . H 6 HOH A 32 532 12 HOH HOH . H 6 HOH A 33 533 59 HOH HOH . H 6 HOH A 34 534 47 HOH HOH . H 6 HOH A 35 535 28 HOH HOH . H 6 HOH A 36 536 64 HOH HOH . H 6 HOH A 37 537 27 HOH HOH . H 6 HOH A 38 538 123 HOH HOH . H 6 HOH A 39 539 79 HOH HOH . H 6 HOH A 40 540 66 HOH HOH . H 6 HOH A 41 541 51 HOH HOH . H 6 HOH A 42 542 1 HOH HOH . H 6 HOH A 43 543 56 HOH HOH . H 6 HOH A 44 544 129 HOH HOH . H 6 HOH A 45 545 3 HOH HOH . H 6 HOH A 46 546 98 HOH HOH . H 6 HOH A 47 547 17 HOH HOH . H 6 HOH A 48 548 43 HOH HOH . H 6 HOH A 49 549 141 HOH HOH . H 6 HOH A 50 550 26 HOH HOH . H 6 HOH A 51 551 87 HOH HOH . H 6 HOH A 52 552 18 HOH HOH . H 6 HOH A 53 553 15 HOH HOH . H 6 HOH A 54 554 105 HOH HOH . H 6 HOH A 55 555 131 HOH HOH . H 6 HOH A 56 556 35 HOH HOH . H 6 HOH A 57 557 9 HOH HOH . H 6 HOH A 58 558 48 HOH HOH . H 6 HOH A 59 559 135 HOH HOH . H 6 HOH A 60 560 2 HOH HOH . H 6 HOH A 61 561 40 HOH HOH . H 6 HOH A 62 562 148 HOH HOH . H 6 HOH A 63 563 104 HOH HOH . H 6 HOH A 64 564 13 HOH HOH . H 6 HOH A 65 565 30 HOH HOH . H 6 HOH A 66 566 75 HOH HOH . H 6 HOH A 67 567 44 HOH HOH . H 6 HOH A 68 568 50 HOH HOH . H 6 HOH A 69 569 89 HOH HOH . H 6 HOH A 70 570 7 HOH HOH . H 6 HOH A 71 571 97 HOH HOH . H 6 HOH A 72 572 143 HOH HOH . H 6 HOH A 73 573 41 HOH HOH . H 6 HOH A 74 574 10 HOH HOH . H 6 HOH A 75 575 86 HOH HOH . H 6 HOH A 76 576 92 HOH HOH . H 6 HOH A 77 577 20 HOH HOH . H 6 HOH A 78 578 77 HOH HOH . H 6 HOH A 79 579 158 HOH HOH . H 6 HOH A 80 580 72 HOH HOH . H 6 HOH A 81 581 137 HOH HOH . H 6 HOH A 82 582 21 HOH HOH . H 6 HOH A 83 583 132 HOH HOH . H 6 HOH A 84 584 33 HOH HOH . H 6 HOH A 85 585 81 HOH HOH . H 6 HOH A 86 586 117 HOH HOH . H 6 HOH A 87 587 61 HOH HOH . H 6 HOH A 88 588 55 HOH HOH . H 6 HOH A 89 589 31 HOH HOH . H 6 HOH A 90 590 147 HOH HOH . H 6 HOH A 91 591 65 HOH HOH . H 6 HOH A 92 592 49 HOH HOH . H 6 HOH A 93 593 91 HOH HOH . H 6 HOH A 94 594 73 HOH HOH . H 6 HOH A 95 595 70 HOH HOH . H 6 HOH A 96 596 19 HOH HOH . H 6 HOH A 97 597 153 HOH HOH . H 6 HOH A 98 598 110 HOH HOH . H 6 HOH A 99 599 54 HOH HOH . H 6 HOH A 100 600 106 HOH HOH . H 6 HOH A 101 601 60 HOH HOH . H 6 HOH A 102 602 42 HOH HOH . H 6 HOH A 103 603 156 HOH HOH . H 6 HOH A 104 604 36 HOH HOH . H 6 HOH A 105 605 94 HOH HOH . H 6 HOH A 106 606 112 HOH HOH . H 6 HOH A 107 607 82 HOH HOH . H 6 HOH A 108 608 25 HOH HOH . H 6 HOH A 109 609 146 HOH HOH . H 6 HOH A 110 610 39 HOH HOH . H 6 HOH A 111 611 126 HOH HOH . H 6 HOH A 112 612 38 HOH HOH . H 6 HOH A 113 613 120 HOH HOH . H 6 HOH A 114 614 139 HOH HOH . H 6 HOH A 115 615 6 HOH HOH . H 6 HOH A 116 616 127 HOH HOH . H 6 HOH A 117 617 74 HOH HOH . H 6 HOH A 118 618 85 HOH HOH . H 6 HOH A 119 619 37 HOH HOH . H 6 HOH A 120 620 102 HOH HOH . H 6 HOH A 121 621 107 HOH HOH . H 6 HOH A 122 622 119 HOH HOH . H 6 HOH A 123 623 121 HOH HOH . H 6 HOH A 124 624 67 HOH HOH . H 6 HOH A 125 625 114 HOH HOH . H 6 HOH A 126 626 71 HOH HOH . H 6 HOH A 127 627 118 HOH HOH . H 6 HOH A 128 628 122 HOH HOH . H 6 HOH A 129 629 95 HOH HOH . H 6 HOH A 130 630 96 HOH HOH . H 6 HOH A 131 631 90 HOH HOH . H 6 HOH A 132 632 149 HOH HOH . H 6 HOH A 133 633 151 HOH HOH . H 6 HOH A 134 634 115 HOH HOH . H 6 HOH A 135 635 155 HOH HOH . H 6 HOH A 136 636 88 HOH HOH . H 6 HOH A 137 637 136 HOH HOH . H 6 HOH A 138 638 133 HOH HOH . H 6 HOH A 139 639 140 HOH HOH . H 6 HOH A 140 640 69 HOH HOH . H 6 HOH A 141 641 84 HOH HOH . H 6 HOH A 142 642 154 HOH HOH . H 6 HOH A 143 643 113 HOH HOH . H 6 HOH A 144 644 80 HOH HOH . H 6 HOH A 145 645 101 HOH HOH . H 6 HOH A 146 646 130 HOH HOH . H 6 HOH A 147 647 128 HOH HOH . H 6 HOH A 148 648 100 HOH HOH . H 6 HOH A 149 649 142 HOH HOH . H 6 HOH A 150 650 62 HOH HOH . H 6 HOH A 151 651 34 HOH HOH . H 6 HOH A 152 652 159 HOH HOH . H 6 HOH A 153 653 99 HOH HOH . H 6 HOH A 154 654 63 HOH HOH . H 6 HOH A 155 655 109 HOH HOH . H 6 HOH A 156 656 124 HOH HOH . H 6 HOH A 157 657 134 HOH HOH . H 6 HOH A 158 658 144 HOH HOH . H 6 HOH A 159 659 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9E0 . . . B 2 -8.418 -27.825 -10.18 1 15.55 ? C01 9E0 401 A 1 HETATM 2 C C02 9E0 . . . B 2 -7.691 -27.142 -11.179 1 19.9 ? C02 9E0 401 A 1 HETATM 3 C C03 9E0 . . . B 2 -9.579 -27.274 -9.583 1 15.67 ? C03 9E0 401 A 1 HETATM 4 C C04 9E0 . . . B 2 -9.986 -26.011 -9.998 1 17.49 ? C04 9E0 401 A 1 HETATM 5 C C05 9E0 . . . B 2 -8.191 -25.761 -11.601 1 21.35 ? C05 9E0 401 A 1 HETATM 6 C C06 9E0 . . . B 2 -9.215 -25.292 -11.066 1 17.69 ? C06 9E0 401 A 1 HETATM 7 C C07 9E0 . . . B 2 -9.884 -23.98 -11.192 1 19.21 ? C07 9E0 401 A 1 HETATM 8 C C08 9E0 . . . B 2 -11.273 -24.172 -10.723 1 17.15 ? C08 9E0 401 A 1 HETATM 9 C C09 9E0 . . . B 2 -8.004 -23.167 -12.413 1 22.28 ? C09 9E0 401 A 1 HETATM 10 C C10 9E0 . . . B 2 -9.529 -23.153 -12.467 1 21.46 ? C10 9E0 401 A 1 HETATM 11 C C11 9E0 . . . B 2 -7.434 -22.13 -13.351 1 23.02 ? C11 9E0 401 A 1 HETATM 12 C C12 9E0 . . . B 2 -10.032 -23.695 -13.785 1 19.77 ? C12 9E0 401 A 1 HETATM 13 N N01 9E0 . . . B 2 -11.161 -25.1 -9.589 1 18.19 ? N01 9E0 401 A 1 HETATM 14 O O01 9E0 . . . B 2 -6.675 -22.522 -14.263 1 20.98 ? O01 9E0 401 A 1 HETATM 15 O O02 9E0 . . . B 2 -7.714 -20.908 -13.184 1 26.69 ? O02 9E0 401 A 1 HETATM 16 S S01 9E0 . . . B 2 -7.338 -24.812 -12.86 1 21.16 ? S01 9E0 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #