data_7CKI # _model_server_result.job_id EXO23UGBPdCsiufSJBuRbQ _model_server_result.datetime_utc '2024-11-23 22:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7CKI # _exptl.entry_id 7CKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CKI _cell.length_a 61.988 _cell.length_b 61.988 _cell.length_c 218.066 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 11 A SER 11 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc2 A OE1 GLN 49 A GLN 49 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc3 A OH TYR 203 A TYR 203 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc4 A O PRO 236 A PRO 236 1_555 G K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O1B ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O2G ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 C MG MG . A MG 402 1_555 E O1A ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 99 n n PG O2G ATP sing 100 n n PG O3G ATP sing 101 n n PG O3B ATP sing 102 n n O2G HOG2 ATP sing 103 n n O3G HOG3 ATP sing 104 n n PB O1B ATP doub 105 n n PB O2B ATP sing 106 n n PB O3B ATP sing 107 n n PB O3A ATP sing 108 n n O2B HOB2 ATP sing 109 n n PA O1A ATP doub 110 n n PA O2A ATP sing 111 n n PA O3A ATP sing 112 n n PA O5' ATP sing 113 n n O2A HOA2 ATP sing 114 n n O5' C5' ATP sing 115 n n C5' C4' ATP sing 116 n n C5' "H5'1" ATP sing 117 n n C5' "H5'2" ATP sing 118 n n C4' O4' ATP sing 119 n n C4' C3' ATP sing 120 n n C4' H4' ATP sing 121 n n O4' C1' ATP sing 122 n n C3' O3' ATP sing 123 n n C3' C2' ATP sing 124 n n C3' H3' ATP sing 125 n n O3' HO3' ATP sing 126 n n C2' O2' ATP sing 127 n n C2' C1' ATP sing 128 n n C2' H2' ATP sing 129 n n O2' HO2' ATP sing 130 n n C1' N9 ATP sing 131 n n C1' H1' ATP sing 132 n n N9 C8 ATP sing 133 n y N9 C4 ATP sing 134 n y C8 N7 ATP doub 135 n y C8 H8 ATP sing 136 n n N7 C5 ATP sing 137 n y C5 C6 ATP sing 138 n y C5 C4 ATP doub 139 n y C6 N6 ATP sing 140 n n C6 N1 ATP doub 141 n y N6 HN61 ATP sing 142 n n N6 HN62 ATP sing 143 n n N1 C2 ATP sing 144 n y C2 N3 ATP doub 145 n y C2 H2 ATP sing 146 n n N3 C4 ATP sing 147 n y # _atom_sites.entry_id 7CKI _atom_sites.fract_transf_matrix[1][1] 0.016132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9E0 A 1 401 329 9E0 CMC . C 3 MG A 1 402 331 MG MG . D 4 K A 1 403 333 K K . E 5 ATP A 1 404 334 ATP ATP . F 4 K A 1 405 335 K K . G 4 K A 1 406 336 K K . H 6 HOH A 1 501 125 HOH HOH . H 6 HOH A 2 502 150 HOH HOH . H 6 HOH A 3 503 45 HOH HOH . H 6 HOH A 4 504 83 HOH HOH . H 6 HOH A 5 505 93 HOH HOH . H 6 HOH A 6 506 111 HOH HOH . H 6 HOH A 7 507 78 HOH HOH . H 6 HOH A 8 508 32 HOH HOH . H 6 HOH A 9 509 57 HOH HOH . H 6 HOH A 10 510 108 HOH HOH . H 6 HOH A 11 511 103 HOH HOH . H 6 HOH A 12 512 68 HOH HOH . H 6 HOH A 13 513 145 HOH HOH . H 6 HOH A 14 514 116 HOH HOH . H 6 HOH A 15 515 11 HOH HOH . H 6 HOH A 16 516 138 HOH HOH . H 6 HOH A 17 517 46 HOH HOH . H 6 HOH A 18 518 4 HOH HOH . H 6 HOH A 19 519 5 HOH HOH . H 6 HOH A 20 520 52 HOH HOH . H 6 HOH A 21 521 157 HOH HOH . H 6 HOH A 22 522 53 HOH HOH . H 6 HOH A 23 523 16 HOH HOH . H 6 HOH A 24 524 76 HOH HOH . H 6 HOH A 25 525 22 HOH HOH . H 6 HOH A 26 526 58 HOH HOH . H 6 HOH A 27 527 29 HOH HOH . H 6 HOH A 28 528 23 HOH HOH . H 6 HOH A 29 529 14 HOH HOH . H 6 HOH A 30 530 8 HOH HOH . H 6 HOH A 31 531 24 HOH HOH . H 6 HOH A 32 532 12 HOH HOH . H 6 HOH A 33 533 59 HOH HOH . H 6 HOH A 34 534 47 HOH HOH . H 6 HOH A 35 535 28 HOH HOH . H 6 HOH A 36 536 64 HOH HOH . H 6 HOH A 37 537 27 HOH HOH . H 6 HOH A 38 538 123 HOH HOH . H 6 HOH A 39 539 79 HOH HOH . H 6 HOH A 40 540 66 HOH HOH . H 6 HOH A 41 541 51 HOH HOH . H 6 HOH A 42 542 1 HOH HOH . H 6 HOH A 43 543 56 HOH HOH . H 6 HOH A 44 544 129 HOH HOH . H 6 HOH A 45 545 3 HOH HOH . H 6 HOH A 46 546 98 HOH HOH . H 6 HOH A 47 547 17 HOH HOH . H 6 HOH A 48 548 43 HOH HOH . H 6 HOH A 49 549 141 HOH HOH . H 6 HOH A 50 550 26 HOH HOH . H 6 HOH A 51 551 87 HOH HOH . H 6 HOH A 52 552 18 HOH HOH . H 6 HOH A 53 553 15 HOH HOH . H 6 HOH A 54 554 105 HOH HOH . H 6 HOH A 55 555 131 HOH HOH . H 6 HOH A 56 556 35 HOH HOH . H 6 HOH A 57 557 9 HOH HOH . H 6 HOH A 58 558 48 HOH HOH . H 6 HOH A 59 559 135 HOH HOH . H 6 HOH A 60 560 2 HOH HOH . H 6 HOH A 61 561 40 HOH HOH . H 6 HOH A 62 562 148 HOH HOH . H 6 HOH A 63 563 104 HOH HOH . H 6 HOH A 64 564 13 HOH HOH . H 6 HOH A 65 565 30 HOH HOH . H 6 HOH A 66 566 75 HOH HOH . H 6 HOH A 67 567 44 HOH HOH . H 6 HOH A 68 568 50 HOH HOH . H 6 HOH A 69 569 89 HOH HOH . H 6 HOH A 70 570 7 HOH HOH . H 6 HOH A 71 571 97 HOH HOH . H 6 HOH A 72 572 143 HOH HOH . H 6 HOH A 73 573 41 HOH HOH . H 6 HOH A 74 574 10 HOH HOH . H 6 HOH A 75 575 86 HOH HOH . H 6 HOH A 76 576 92 HOH HOH . H 6 HOH A 77 577 20 HOH HOH . H 6 HOH A 78 578 77 HOH HOH . H 6 HOH A 79 579 158 HOH HOH . H 6 HOH A 80 580 72 HOH HOH . H 6 HOH A 81 581 137 HOH HOH . H 6 HOH A 82 582 21 HOH HOH . H 6 HOH A 83 583 132 HOH HOH . H 6 HOH A 84 584 33 HOH HOH . H 6 HOH A 85 585 81 HOH HOH . H 6 HOH A 86 586 117 HOH HOH . H 6 HOH A 87 587 61 HOH HOH . H 6 HOH A 88 588 55 HOH HOH . H 6 HOH A 89 589 31 HOH HOH . H 6 HOH A 90 590 147 HOH HOH . H 6 HOH A 91 591 65 HOH HOH . H 6 HOH A 92 592 49 HOH HOH . H 6 HOH A 93 593 91 HOH HOH . H 6 HOH A 94 594 73 HOH HOH . H 6 HOH A 95 595 70 HOH HOH . H 6 HOH A 96 596 19 HOH HOH . H 6 HOH A 97 597 153 HOH HOH . H 6 HOH A 98 598 110 HOH HOH . H 6 HOH A 99 599 54 HOH HOH . H 6 HOH A 100 600 106 HOH HOH . H 6 HOH A 101 601 60 HOH HOH . H 6 HOH A 102 602 42 HOH HOH . H 6 HOH A 103 603 156 HOH HOH . H 6 HOH A 104 604 36 HOH HOH . H 6 HOH A 105 605 94 HOH HOH . H 6 HOH A 106 606 112 HOH HOH . H 6 HOH A 107 607 82 HOH HOH . H 6 HOH A 108 608 25 HOH HOH . H 6 HOH A 109 609 146 HOH HOH . H 6 HOH A 110 610 39 HOH HOH . H 6 HOH A 111 611 126 HOH HOH . H 6 HOH A 112 612 38 HOH HOH . H 6 HOH A 113 613 120 HOH HOH . H 6 HOH A 114 614 139 HOH HOH . H 6 HOH A 115 615 6 HOH HOH . H 6 HOH A 116 616 127 HOH HOH . H 6 HOH A 117 617 74 HOH HOH . H 6 HOH A 118 618 85 HOH HOH . H 6 HOH A 119 619 37 HOH HOH . H 6 HOH A 120 620 102 HOH HOH . H 6 HOH A 121 621 107 HOH HOH . H 6 HOH A 122 622 119 HOH HOH . H 6 HOH A 123 623 121 HOH HOH . H 6 HOH A 124 624 67 HOH HOH . H 6 HOH A 125 625 114 HOH HOH . H 6 HOH A 126 626 71 HOH HOH . H 6 HOH A 127 627 118 HOH HOH . H 6 HOH A 128 628 122 HOH HOH . H 6 HOH A 129 629 95 HOH HOH . H 6 HOH A 130 630 96 HOH HOH . H 6 HOH A 131 631 90 HOH HOH . H 6 HOH A 132 632 149 HOH HOH . H 6 HOH A 133 633 151 HOH HOH . H 6 HOH A 134 634 115 HOH HOH . H 6 HOH A 135 635 155 HOH HOH . H 6 HOH A 136 636 88 HOH HOH . H 6 HOH A 137 637 136 HOH HOH . H 6 HOH A 138 638 133 HOH HOH . H 6 HOH A 139 639 140 HOH HOH . H 6 HOH A 140 640 69 HOH HOH . H 6 HOH A 141 641 84 HOH HOH . H 6 HOH A 142 642 154 HOH HOH . H 6 HOH A 143 643 113 HOH HOH . H 6 HOH A 144 644 80 HOH HOH . H 6 HOH A 145 645 101 HOH HOH . H 6 HOH A 146 646 130 HOH HOH . H 6 HOH A 147 647 128 HOH HOH . H 6 HOH A 148 648 100 HOH HOH . H 6 HOH A 149 649 142 HOH HOH . H 6 HOH A 150 650 62 HOH HOH . H 6 HOH A 151 651 34 HOH HOH . H 6 HOH A 152 652 159 HOH HOH . H 6 HOH A 153 653 99 HOH HOH . H 6 HOH A 154 654 63 HOH HOH . H 6 HOH A 155 655 109 HOH HOH . H 6 HOH A 156 656 124 HOH HOH . H 6 HOH A 157 657 134 HOH HOH . H 6 HOH A 158 658 144 HOH HOH . H 6 HOH A 159 659 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 -9.122 -17.465 -18.529 1 20.43 ? PG ATP 404 A 1 HETATM 2 O O1G ATP . . . E 5 -8.36 -16.452 -19.427 1 18.02 ? O1G ATP 404 A 1 HETATM 3 O O2G ATP . . . E 5 -8.451 -17.634 -17.181 1 15.94 ? O2G ATP 404 A 1 HETATM 4 O O3G ATP . . . E 5 -10.557 -17.015 -18.318 1 20.07 ? O3G ATP 404 A 1 HETATM 5 P PB ATP . . . E 5 -7.92 -19.911 -19.494 1 18.93 ? PB ATP 404 A 1 HETATM 6 O O1B ATP . . . E 5 -6.752 -19.462 -18.635 1 20.06 ? O1B ATP 404 A 1 HETATM 7 O O2B ATP . . . E 5 -7.537 -19.974 -20.938 1 21.04 ? O2B ATP 404 A 1 HETATM 8 O O3B ATP . . . E 5 -9.185 -18.908 -19.297 1 22.91 ? O3B ATP 404 A 1 HETATM 9 P PA ATP . . . E 5 -8.817 -21.854 -17.517 1 19.39 ? PA ATP 404 A 1 HETATM 10 O O1A ATP . . . E 5 -8.516 -20.712 -16.564 1 19.16 ? O1A ATP 404 A 1 HETATM 11 O O2A ATP . . . E 5 -10.262 -22.364 -17.427 1 17.57 ? O2A ATP 404 A 1 HETATM 12 O O3A ATP . . . E 5 -8.447 -21.406 -19.06 1 21.85 ? O3A ATP 404 A 1 HETATM 13 O O5' ATP . . . E 5 -7.735 -23.139 -17.161 1 22.76 ? O5' ATP 404 A 1 HETATM 14 C C5' ATP . . . E 5 -8.039 -24.525 -17.504 1 18.89 ? C5' ATP 404 A 1 HETATM 15 C C4' ATP . . . E 5 -6.844 -25.263 -17.605 1 18.45 ? C4' ATP 404 A 1 HETATM 16 O O4' ATP . . . E 5 -6.089 -24.873 -18.857 1 23.95 ? O4' ATP 404 A 1 HETATM 17 C C3' ATP . . . E 5 -5.805 -24.971 -16.419 1 19.83 ? C3' ATP 404 A 1 HETATM 18 O O3' ATP . . . E 5 -5.254 -26.303 -15.991 1 19.4 ? O3' ATP 404 A 1 HETATM 19 C C2' ATP . . . E 5 -4.928 -24.208 -16.937 1 22.34 ? C2' ATP 404 A 1 HETATM 20 O O2' ATP . . . E 5 -3.568 -24.285 -16.346 1 22.56 ? O2' ATP 404 A 1 HETATM 21 C C1' ATP . . . E 5 -4.83 -24.636 -18.522 1 22.31 ? C1' ATP 404 A 1 HETATM 22 N N9 ATP . . . E 5 -4.455 -23.511 -19.264 1 23.3 ? N9 ATP 404 A 1 HETATM 23 C C8 ATP . . . E 5 -4.898 -22.262 -19.368 1 23.7 ? C8 ATP 404 A 1 HETATM 24 N N7 ATP . . . E 5 -4.137 -21.66 -20.292 1 23.02 ? N7 ATP 404 A 1 HETATM 25 C C5 ATP . . . E 5 -3.249 -22.552 -20.754 1 25.03 ? C5 ATP 404 A 1 HETATM 26 C C6 ATP . . . E 5 -2.27 -22.391 -21.715 1 20.86 ? C6 ATP 404 A 1 HETATM 27 N N6 ATP . . . E 5 -1.764 -21.373 -22.586 1 18.5 ? N6 ATP 404 A 1 HETATM 28 N N1 ATP . . . E 5 -1.487 -23.422 -22.033 1 22.27 ? N1 ATP 404 A 1 HETATM 29 C C2 ATP . . . E 5 -1.666 -24.628 -21.401 1 22.39 ? C2 ATP 404 A 1 HETATM 30 N N3 ATP . . . E 5 -2.632 -24.781 -20.444 1 21.43 ? N3 ATP 404 A 1 HETATM 31 C C4 ATP . . . E 5 -3.435 -23.729 -20.13 1 22.89 ? C4 ATP 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #