data_7CKX # _model_server_result.job_id 0TIxrShekU3mxd2ixivq8A _model_server_result.datetime_utc '2024-12-23 11:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ckx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7CKX # _exptl.entry_id 7CKX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.433 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3S)-3-(1-adamantyl)-1-(aminomethyl)-3,4-dihydro-1H-isochromene-5,6-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CKX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 121 N CYS 99 1_555 D SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 E SG CYS 103 R CYS 96 1_555 E SG CYS 193 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 E SG CYS 305 R CYS 298 1_555 E SG CYS 314 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H27 N O3' _chem_comp.formula_weight 329.433 _chem_comp.id G3O _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3S)-3-(1-adamantyl)-1-(aminomethyl)-3,4-dihydro-1H-isochromene-5,6-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C02 G3O sing 160 n n C03 C02 G3O doub 161 n y C03 C04 G3O sing 162 n y C02 C01 G3O sing 163 n y C04 C05 G3O doub 164 n y C01 O24 G3O sing 165 n n C01 C06 G3O doub 166 n y C05 C06 G3O sing 167 n y C05 C10 G3O sing 168 n n C06 C07 G3O sing 169 n n C10 O09 G3O sing 170 n n C10 C11 G3O sing 171 n n C08 C07 G3O sing 172 n n C08 O09 G3O sing 173 n n C08 C13 G3O sing 174 n n C21 C13 G3O sing 175 n n C21 C20 G3O sing 176 n n C14 C13 G3O sing 177 n n C14 C15 G3O sing 178 n n C13 C18 G3O sing 179 n n C22 C20 G3O sing 180 n n C22 C15 G3O sing 181 n n C11 N12 G3O sing 182 n n C20 C19 G3O sing 183 n n C15 C16 G3O sing 184 n n C18 C17 G3O sing 185 n n C19 C17 G3O sing 186 n n C16 C17 G3O sing 187 n n C10 H1 G3O sing 188 n n N12 H2 G3O sing 189 n n N12 H3 G3O sing 190 n n C15 H5 G3O sing 191 n n C17 H6 G3O sing 192 n n C20 H7 G3O sing 193 n n C21 H8 G3O sing 194 n n C21 H9 G3O sing 195 n n C22 H10 G3O sing 196 n n C22 H11 G3O sing 197 n n C03 H12 G3O sing 198 n n C04 H13 G3O sing 199 n n C07 H14 G3O sing 200 n n C07 H15 G3O sing 201 n n C08 H16 G3O sing 202 n n C11 H17 G3O sing 203 n n C11 H18 G3O sing 204 n n C14 H19 G3O sing 205 n n C14 H20 G3O sing 206 n n C16 H21 G3O sing 207 n n C16 H22 G3O sing 208 n n C18 H23 G3O sing 209 n n C18 H24 G3O sing 210 n n C19 H25 G3O sing 211 n n C19 H26 G3O sing 212 n n O23 H27 G3O sing 213 n n O24 H28 G3O sing 214 n n # _atom_sites.entry_id 7CKX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 G3O R 1 501 1 G3O LIG . G 7 CLR R 1 502 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G3O . . . F 6 20.75 14.318 9.103 1 83 ? C10 G3O 501 R 1 HETATM 2 N N12 G3O . . . F 6 20.311 12.17 10.145 1 83 ? N12 G3O 501 R 1 HETATM 3 C C13 G3O . . . F 6 24.188 15.779 10.023 1 83 ? C13 G3O 501 R 1 HETATM 4 C C15 G3O . . . F 6 26.136 17.246 10.457 1 83 ? C15 G3O 501 R 1 HETATM 5 C C17 G3O . . . F 6 25.199 15.823 12.281 1 83 ? C17 G3O 501 R 1 HETATM 6 C C20 G3O . . . F 6 26.454 14.726 10.367 1 83 ? C20 G3O 501 R 1 HETATM 7 C C21 G3O . . . F 6 25.121 14.638 9.61 1 83 ? C21 G3O 501 R 1 HETATM 8 C C22 G3O . . . F 6 27.087 16.096 10.057 1 83 ? C22 G3O 501 R 1 HETATM 9 C C01 G3O . . . F 6 19.94 18.024 8.641 1 83 ? C01 G3O 501 R 1 HETATM 10 C C02 G3O . . . F 6 18.664 17.981 8.131 1 83 ? C02 G3O 501 R 1 HETATM 11 C C03 G3O . . . F 6 18.053 16.782 7.93 1 83 ? C03 G3O 501 R 1 HETATM 12 C C04 G3O . . . F 6 18.709 15.615 8.237 1 83 ? C04 G3O 501 R 1 HETATM 13 C C05 G3O . . . F 6 20.047 15.658 8.772 1 83 ? C05 G3O 501 R 1 HETATM 14 C C06 G3O . . . F 6 20.627 16.799 8.962 1 83 ? C06 G3O 501 R 1 HETATM 15 C C07 G3O . . . F 6 21.99 16.887 9.505 1 83 ? C07 G3O 501 R 1 HETATM 16 C C08 G3O . . . F 6 22.785 15.671 9.235 1 83 ? C08 G3O 501 R 1 HETATM 17 C C11 G3O . . . F 6 19.921 13.577 10.105 1 83 ? C11 G3O 501 R 1 HETATM 18 C C14 G3O . . . F 6 24.892 17.055 9.665 1 83 ? C14 G3O 501 R 1 HETATM 19 C C16 G3O . . . F 6 25.906 17.112 11.927 1 83 ? C16 G3O 501 R 1 HETATM 20 C C18 G3O . . . F 6 23.959 15.629 11.51 1 83 ? C18 G3O 501 R 1 HETATM 21 C C19 G3O . . . F 6 26.146 14.674 11.877 1 83 ? C19 G3O 501 R 1 HETATM 22 O O09 G3O . . . F 6 22.114 14.463 9.656 1 83 ? O09 G3O 501 R 1 HETATM 23 O O23 G3O . . . F 6 17.991 19.174 7.817 1 83 ? O23 G3O 501 R 1 HETATM 24 O O24 G3O . . . F 6 20.572 19.259 8.849 1 83 ? O24 G3O 501 R 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #