data_7CKY # _model_server_result.job_id Xywi-JYpnl3WMr9coW1IzA _model_server_result.datetime_utc '2024-10-11 03:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 7CKY # _exptl.entry_id 7CKY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 389.353 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-[3-[bis(fluoranyl)methoxy]pyridin-2-yl]oxy-2-methyl-phenyl]-1,5-dimethyl-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CKY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 121 N CYS 99 1_555 D SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? disulf ? disulf3 E SG CYS 298 R CYS 298 1_555 E SG CYS 307 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C19 H17 F2 N3 O4' _chem_comp.formula_weight 389.353 _chem_comp.id G3U _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-[3-[bis(fluoranyl)methoxy]pyridin-2-yl]oxy-2-methyl-phenyl]-1,5-dimethyl-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CKY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 501 1 CLR CLR . G 7 G3U R 1 502 1 G3U LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G3U . . . G 7 107.76 117.034 136.116 1 46.43 ? C10 G3U 502 R 1 HETATM 2 C C13 G3U . . . G 7 105.666 116.599 138.385 1 46.43 ? C13 G3U 502 R 1 HETATM 3 C C15 G3U . . . G 7 104.276 118.337 139.284 1 46.43 ? C15 G3U 502 R 1 HETATM 4 C C17 G3U . . . G 7 106.454 118.867 138.422 1 46.43 ? C17 G3U 502 R 1 HETATM 5 C C21 G3U . . . G 7 101.798 119.08 141.772 1 46.43 ? C21 G3U 502 R 1 HETATM 6 C C24 G3U . . . G 7 100.884 119.582 139.717 1 46.43 ? C24 G3U 502 R 1 HETATM 7 C C26 G3U . . . G 7 102.043 119.193 139.094 1 46.43 ? C26 G3U 502 R 1 HETATM 8 C C28 G3U . . . G 7 104.036 118.218 142.018 1 46.43 ? C28 G3U 502 R 1 HETATM 9 C C02 G3U . . . G 7 111.107 116.947 135.833 1 46.43 ? C02 G3U 502 R 1 HETATM 10 C C05 G3U . . . G 7 108.84 116.532 135.403 1 46.43 ? C05 G3U 502 R 1 HETATM 11 C C06 G3U . . . G 7 108.76 116.435 134.023 1 46.43 ? C06 G3U 502 R 1 HETATM 12 C C07 G3U . . . G 7 107.595 116.847 133.397 1 46.43 ? C07 G3U 502 R 1 HETATM 13 C C08 G3U . . . G 7 106.551 117.341 134.163 1 46.43 ? C08 G3U 502 R 1 HETATM 14 C C12 G3U . . . G 7 106.655 117.532 138.11 1 46.43 ? C12 G3U 502 R 1 HETATM 15 C C14 G3U . . . G 7 104.476 117.003 138.972 1 46.43 ? C14 G3U 502 R 1 HETATM 16 C C16 G3U . . . G 7 105.265 119.271 139.009 1 46.43 ? C16 G3U 502 R 1 HETATM 17 C C18 G3U . . . G 7 105.044 120.743 139.354 1 46.43 ? C18 G3U 502 R 1 HETATM 18 C C19 G3U . . . G 7 103.087 118.74 139.871 1 46.43 ? C19 G3U 502 R 1 HETATM 19 C C27 G3U . . . G 7 102.173 119.261 137.572 1 46.43 ? C27 G3U 502 R 1 HETATM 20 F F01 G3U . . . G 7 112.166 116.205 135.396 1 46.43 ? F01 G3U 502 R 1 HETATM 21 F F03 G3U . . . G 7 111.479 117.593 136.975 1 46.43 ? F03 G3U 502 R 1 HETATM 22 N N09 G3U . . . G 7 106.666 117.417 135.478 1 46.43 ? N09 G3U 502 R 1 HETATM 23 N N20 G3U . . . G 7 102.939 118.695 141.191 1 46.43 ? N20 G3U 502 R 1 HETATM 24 N N23 G3U . . . G 7 100.785 119.519 141.028 1 46.43 ? N23 G3U 502 R 1 HETATM 25 O O04 G3U . . . G 7 110 116.126 136.073 1 46.43 ? O04 G3U 502 R 1 HETATM 26 O O11 G3U . . . G 7 107.86 117.125 137.515 1 46.43 ? O11 G3U 502 R 1 HETATM 27 O O22 G3U . . . G 7 101.689 119.031 142.951 1 46.43 ? O22 G3U 502 R 1 HETATM 28 O O25 G3U . . . G 7 99.97 119.976 139.073 1 46.43 ? O25 G3U 502 R 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #