data_7CKY
#
_model_server_result.job_id            zMoIXImgDkqavjAKbwgZUQ 
_model_server_result.datetime_utc      '2024-11-21 13:44:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    7CKY 
#
_exptl.entry_id    7CKY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              389.353 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[4-[3-[bis(fluoranyl)methoxy]pyridin-2-yl]oxy-2-methyl-phenyl]-1,5-dimethyl-pyrimidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CKY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 121 N CYS 99 1_555 D SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
disulf ? disulf3 E SG CYS 298 R CYS 298 1_555 E SG CYS 307 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C19 H17 F2 N3 O4' 
_chem_comp.formula_weight    389.353 
_chem_comp.id                G3U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[4-[3-[bis(fluoranyl)methoxy]pyridin-2-yl]oxy-2-methyl-phenyl]-1,5-dimethyl-pyrimidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C06 G3U doub 160 n y 
C07 C08 G3U sing 161 n y 
C06 C05 G3U sing 162 n y 
C08 N09 G3U doub 163 n y 
C05 O04 G3U sing 164 n n 
C05 C10 G3U doub 165 n y 
F01 C02 G3U sing 166 n n 
N09 C10 G3U sing 167 n y 
C02 O04 G3U sing 168 n n 
C02 F03 G3U sing 169 n n 
C10 O11 G3U sing 170 n n 
O11 C12 G3U sing 171 n n 
C27 C26 G3U sing 172 n n 
C12 C13 G3U doub 173 n y 
C12 C17 G3U sing 174 n y 
C13 C14 G3U sing 175 n y 
C17 C16 G3U doub 176 n y 
C14 C15 G3U doub 177 n y 
C16 C15 G3U sing 178 n y 
C16 C18 G3U sing 179 n n 
O25 C24 G3U doub 180 n n 
C26 C24 G3U sing 181 n n 
C26 C19 G3U doub 182 n n 
C15 C19 G3U sing 183 n n 
C24 N23 G3U sing 184 n n 
C19 N20 G3U sing 185 n n 
N23 C21 G3U sing 186 n n 
N20 C21 G3U sing 187 n n 
N20 C28 G3U sing 188 n n 
C21 O22 G3U doub 189 n n 
C13 H1 G3U sing 190 n n 
C17 H2 G3U sing 191 n n 
C28 H3 G3U sing 192 n n 
C28 H4 G3U sing 193 n n 
C28 H5 G3U sing 194 n n 
C02 H6 G3U sing 195 n n 
C06 H7 G3U sing 196 n n 
C07 H8 G3U sing 197 n n 
C08 H9 G3U sing 198 n n 
C14 H10 G3U sing 199 n n 
C18 H11 G3U sing 200 n n 
C18 H12 G3U sing 201 n n 
C18 H13 G3U sing 202 n n 
C27 H14 G3U sing 203 n n 
C27 H15 G3U sing 204 n n 
C27 H16 G3U sing 205 n n 
N23 H17 G3U sing 206 n n 
#
_atom_sites.entry_id                     7CKY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR R 1 501 1 CLR CLR . 
G 7 G3U R 1 502 1 G3U LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 G3U . . . G 7 107.76 117.034 136.116 1 46.43 ? C10 G3U 502 R 1 
HETATM 2 C C13 G3U . . . G 7 105.666 116.599 138.385 1 46.43 ? C13 G3U 502 R 1 
HETATM 3 C C15 G3U . . . G 7 104.276 118.337 139.284 1 46.43 ? C15 G3U 502 R 1 
HETATM 4 C C17 G3U . . . G 7 106.454 118.867 138.422 1 46.43 ? C17 G3U 502 R 1 
HETATM 5 C C21 G3U . . . G 7 101.798 119.08 141.772 1 46.43 ? C21 G3U 502 R 1 
HETATM 6 C C24 G3U . . . G 7 100.884 119.582 139.717 1 46.43 ? C24 G3U 502 R 1 
HETATM 7 C C26 G3U . . . G 7 102.043 119.193 139.094 1 46.43 ? C26 G3U 502 R 1 
HETATM 8 C C28 G3U . . . G 7 104.036 118.218 142.018 1 46.43 ? C28 G3U 502 R 1 
HETATM 9 C C02 G3U . . . G 7 111.107 116.947 135.833 1 46.43 ? C02 G3U 502 R 1 
HETATM 10 C C05 G3U . . . G 7 108.84 116.532 135.403 1 46.43 ? C05 G3U 502 R 1 
HETATM 11 C C06 G3U . . . G 7 108.76 116.435 134.023 1 46.43 ? C06 G3U 502 R 1 
HETATM 12 C C07 G3U . . . G 7 107.595 116.847 133.397 1 46.43 ? C07 G3U 502 R 1 
HETATM 13 C C08 G3U . . . G 7 106.551 117.341 134.163 1 46.43 ? C08 G3U 502 R 1 
HETATM 14 C C12 G3U . . . G 7 106.655 117.532 138.11 1 46.43 ? C12 G3U 502 R 1 
HETATM 15 C C14 G3U . . . G 7 104.476 117.003 138.972 1 46.43 ? C14 G3U 502 R 1 
HETATM 16 C C16 G3U . . . G 7 105.265 119.271 139.009 1 46.43 ? C16 G3U 502 R 1 
HETATM 17 C C18 G3U . . . G 7 105.044 120.743 139.354 1 46.43 ? C18 G3U 502 R 1 
HETATM 18 C C19 G3U . . . G 7 103.087 118.74 139.871 1 46.43 ? C19 G3U 502 R 1 
HETATM 19 C C27 G3U . . . G 7 102.173 119.261 137.572 1 46.43 ? C27 G3U 502 R 1 
HETATM 20 F F01 G3U . . . G 7 112.166 116.205 135.396 1 46.43 ? F01 G3U 502 R 1 
HETATM 21 F F03 G3U . . . G 7 111.479 117.593 136.975 1 46.43 ? F03 G3U 502 R 1 
HETATM 22 N N09 G3U . . . G 7 106.666 117.417 135.478 1 46.43 ? N09 G3U 502 R 1 
HETATM 23 N N20 G3U . . . G 7 102.939 118.695 141.191 1 46.43 ? N20 G3U 502 R 1 
HETATM 24 N N23 G3U . . . G 7 100.785 119.519 141.028 1 46.43 ? N23 G3U 502 R 1 
HETATM 25 O O04 G3U . . . G 7 110 116.126 136.073 1 46.43 ? O04 G3U 502 R 1 
HETATM 26 O O11 G3U . . . G 7 107.86 117.125 137.515 1 46.43 ? O11 G3U 502 R 1 
HETATM 27 O O22 G3U . . . G 7 101.689 119.031 142.951 1 46.43 ? O22 G3U 502 R 1 
HETATM 28 O O25 G3U . . . G 7 99.97 119.976 139.073 1 46.43 ? O25 G3U 502 R 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#