data_7CL0 # _model_server_result.job_id e-2a58hJNAWhlNm7hH5PhA _model_server_result.datetime_utc '2024-11-18 04:37:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":411}' # _entry.id 7CL0 # _exptl.entry_id 7CL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CL0 _cell.length_a 161.795 _cell.length_b 161.795 _cell.length_c 161.795 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 5 D LYS 5 1_555 U C1 G4U . D G4U 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A SG CYS 141 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A SG CYS 144 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A SG CYS 166 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A SG CYS 177 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 7CL0 _atom_sites.fract_transf_matrix[1][1] 0.006181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AR6 A 1 401 1 AR6 AR6 . D 4 ZN A 1 402 1 ZN ZN . E 5 SO4 A 1 403 1 SO4 SO4 . F 5 SO4 A 1 404 2 SO4 SO4 . G 5 SO4 A 1 405 3 SO4 SO4 . H 5 SO4 A 1 406 4 SO4 SO4 . I 5 SO4 A 1 407 5 SO4 SO4 . J 5 SO4 A 1 408 8 SO4 SO4 . K 5 SO4 A 1 409 9 SO4 SO4 . L 5 SO4 A 1 410 10 SO4 SO4 . M 6 EDO A 1 411 2 EDO EDO . N 6 EDO A 1 412 3 EDO EDO . O 6 EDO A 1 413 4 EDO EDO . P 6 EDO A 1 414 5 EDO EDO . Q 6 EDO A 1 415 6 EDO EDO . R 6 EDO A 1 416 7 EDO EDO . S 6 EDO A 1 417 8 EDO EDO . T 6 EDO A 1 418 9 EDO EDO . U 7 G4U D 1 101 1 G4U MYR . V 8 PEG D 1 102 1 PEG PEG . W 9 HOH A 1 501 145 HOH HOH . W 9 HOH A 2 502 171 HOH HOH . W 9 HOH A 3 503 192 HOH HOH . W 9 HOH A 4 504 33 HOH HOH . W 9 HOH A 5 505 30 HOH HOH . W 9 HOH A 6 506 86 HOH HOH . W 9 HOH A 7 507 189 HOH HOH . W 9 HOH A 8 508 180 HOH HOH . W 9 HOH A 9 509 98 HOH HOH . W 9 HOH A 10 510 50 HOH HOH . W 9 HOH A 11 511 92 HOH HOH . W 9 HOH A 12 512 191 HOH HOH . W 9 HOH A 13 513 79 HOH HOH . W 9 HOH A 14 514 177 HOH HOH . W 9 HOH A 15 515 234 HOH HOH . W 9 HOH A 16 516 198 HOH HOH . W 9 HOH A 17 517 169 HOH HOH . W 9 HOH A 18 518 173 HOH HOH . W 9 HOH A 19 519 94 HOH HOH . W 9 HOH A 20 520 133 HOH HOH . W 9 HOH A 21 521 159 HOH HOH . W 9 HOH A 22 522 200 HOH HOH . W 9 HOH A 23 523 52 HOH HOH . W 9 HOH A 24 524 199 HOH HOH . W 9 HOH A 25 525 55 HOH HOH . W 9 HOH A 26 526 35 HOH HOH . W 9 HOH A 27 527 236 HOH HOH . W 9 HOH A 28 528 77 HOH HOH . W 9 HOH A 29 529 4 HOH HOH . W 9 HOH A 30 530 85 HOH HOH . W 9 HOH A 31 531 67 HOH HOH . W 9 HOH A 32 532 59 HOH HOH . W 9 HOH A 33 533 132 HOH HOH . W 9 HOH A 34 534 72 HOH HOH . W 9 HOH A 35 535 121 HOH HOH . W 9 HOH A 36 536 43 HOH HOH . W 9 HOH A 37 537 16 HOH HOH . W 9 HOH A 38 538 193 HOH HOH . W 9 HOH A 39 539 158 HOH HOH . W 9 HOH A 40 540 138 HOH HOH . W 9 HOH A 41 541 93 HOH HOH . W 9 HOH A 42 542 10 HOH HOH . W 9 HOH A 43 543 260 HOH HOH . W 9 HOH A 44 544 6 HOH HOH . W 9 HOH A 45 545 13 HOH HOH . W 9 HOH A 46 546 19 HOH HOH . W 9 HOH A 47 547 11 HOH HOH . W 9 HOH A 48 548 37 HOH HOH . W 9 HOH A 49 549 62 HOH HOH . W 9 HOH A 50 550 197 HOH HOH . W 9 HOH A 51 551 28 HOH HOH . W 9 HOH A 52 552 181 HOH HOH . W 9 HOH A 53 553 68 HOH HOH . W 9 HOH A 54 554 9 HOH HOH . W 9 HOH A 55 555 126 HOH HOH . W 9 HOH A 56 556 136 HOH HOH . W 9 HOH A 57 557 83 HOH HOH . W 9 HOH A 58 558 96 HOH HOH . W 9 HOH A 59 559 48 HOH HOH . W 9 HOH A 60 560 103 HOH HOH . W 9 HOH A 61 561 5 HOH HOH . W 9 HOH A 62 562 21 HOH HOH . W 9 HOH A 63 563 130 HOH HOH . W 9 HOH A 64 564 18 HOH HOH . W 9 HOH A 65 565 142 HOH HOH . W 9 HOH A 66 566 235 HOH HOH . W 9 HOH A 67 567 78 HOH HOH . W 9 HOH A 68 568 223 HOH HOH . W 9 HOH A 69 569 66 HOH HOH . W 9 HOH A 70 570 141 HOH HOH . W 9 HOH A 71 571 153 HOH HOH . W 9 HOH A 72 572 38 HOH HOH . W 9 HOH A 73 573 176 HOH HOH . W 9 HOH A 74 574 12 HOH HOH . W 9 HOH A 75 575 8 HOH HOH . W 9 HOH A 76 576 117 HOH HOH . W 9 HOH A 77 577 3 HOH HOH . W 9 HOH A 78 578 20 HOH HOH . W 9 HOH A 79 579 134 HOH HOH . W 9 HOH A 80 580 185 HOH HOH . W 9 HOH A 81 581 14 HOH HOH . W 9 HOH A 82 582 151 HOH HOH . W 9 HOH A 83 583 89 HOH HOH . W 9 HOH A 84 584 1 HOH HOH . W 9 HOH A 85 585 256 HOH HOH . W 9 HOH A 86 586 26 HOH HOH . W 9 HOH A 87 587 124 HOH HOH . W 9 HOH A 88 588 112 HOH HOH . W 9 HOH A 89 589 259 HOH HOH . W 9 HOH A 90 590 7 HOH HOH . W 9 HOH A 91 591 123 HOH HOH . W 9 HOH A 92 592 128 HOH HOH . W 9 HOH A 93 593 115 HOH HOH . W 9 HOH A 94 594 97 HOH HOH . W 9 HOH A 95 595 106 HOH HOH . W 9 HOH A 96 596 122 HOH HOH . W 9 HOH A 97 597 87 HOH HOH . W 9 HOH A 98 598 34 HOH HOH . W 9 HOH A 99 599 233 HOH HOH . W 9 HOH A 100 600 25 HOH HOH . W 9 HOH A 101 601 143 HOH HOH . W 9 HOH A 102 602 184 HOH HOH . W 9 HOH A 103 603 69 HOH HOH . W 9 HOH A 104 604 116 HOH HOH . W 9 HOH A 105 605 137 HOH HOH . W 9 HOH A 106 606 100 HOH HOH . W 9 HOH A 107 607 57 HOH HOH . W 9 HOH A 108 608 226 HOH HOH . W 9 HOH A 109 609 163 HOH HOH . W 9 HOH A 110 610 113 HOH HOH . W 9 HOH A 111 611 120 HOH HOH . W 9 HOH A 112 612 111 HOH HOH . W 9 HOH A 113 613 187 HOH HOH . W 9 HOH A 114 614 17 HOH HOH . W 9 HOH A 115 615 32 HOH HOH . W 9 HOH A 116 616 196 HOH HOH . W 9 HOH A 117 617 104 HOH HOH . W 9 HOH A 118 618 54 HOH HOH . W 9 HOH A 119 619 178 HOH HOH . W 9 HOH A 120 620 127 HOH HOH . W 9 HOH A 121 621 258 HOH HOH . W 9 HOH A 122 622 243 HOH HOH . W 9 HOH A 123 623 195 HOH HOH . W 9 HOH A 124 624 110 HOH HOH . W 9 HOH A 125 625 102 HOH HOH . W 9 HOH A 126 626 2 HOH HOH . W 9 HOH A 127 627 45 HOH HOH . W 9 HOH A 128 628 46 HOH HOH . W 9 HOH A 129 629 144 HOH HOH . W 9 HOH A 130 630 15 HOH HOH . W 9 HOH A 131 631 22 HOH HOH . W 9 HOH A 132 632 152 HOH HOH . W 9 HOH A 133 633 27 HOH HOH . W 9 HOH A 134 634 24 HOH HOH . W 9 HOH A 135 635 147 HOH HOH . W 9 HOH A 136 636 139 HOH HOH . W 9 HOH A 137 637 150 HOH HOH . W 9 HOH A 138 638 135 HOH HOH . W 9 HOH A 139 639 129 HOH HOH . W 9 HOH A 140 640 186 HOH HOH . W 9 HOH A 141 641 88 HOH HOH . W 9 HOH A 142 642 264 HOH HOH . W 9 HOH A 143 643 248 HOH HOH . W 9 HOH A 144 644 114 HOH HOH . W 9 HOH A 145 645 101 HOH HOH . W 9 HOH A 146 646 253 HOH HOH . W 9 HOH A 147 647 237 HOH HOH . W 9 HOH A 148 648 209 HOH HOH . W 9 HOH A 149 649 267 HOH HOH . W 9 HOH A 150 650 146 HOH HOH . W 9 HOH A 151 651 23 HOH HOH . W 9 HOH A 152 652 95 HOH HOH . W 9 HOH A 153 653 204 HOH HOH . W 9 HOH A 154 654 246 HOH HOH . W 9 HOH A 155 655 108 HOH HOH . W 9 HOH A 156 656 91 HOH HOH . W 9 HOH A 157 657 107 HOH HOH . W 9 HOH A 158 658 74 HOH HOH . W 9 HOH A 159 659 172 HOH HOH . W 9 HOH A 160 660 240 HOH HOH . W 9 HOH A 161 661 168 HOH HOH . W 9 HOH A 162 662 227 HOH HOH . W 9 HOH A 163 663 105 HOH HOH . W 9 HOH A 164 664 40 HOH HOH . W 9 HOH A 165 665 125 HOH HOH . W 9 HOH A 166 666 164 HOH HOH . W 9 HOH A 167 667 44 HOH HOH . W 9 HOH A 168 668 47 HOH HOH . W 9 HOH A 169 669 140 HOH HOH . W 9 HOH A 170 670 131 HOH HOH . W 9 HOH A 171 671 36 HOH HOH . W 9 HOH A 172 672 149 HOH HOH . W 9 HOH A 173 673 242 HOH HOH . W 9 HOH A 174 674 206 HOH HOH . W 9 HOH A 175 675 29 HOH HOH . W 9 HOH A 176 676 65 HOH HOH . W 9 HOH A 177 677 217 HOH HOH . W 9 HOH A 178 678 119 HOH HOH . W 9 HOH A 179 679 51 HOH HOH . W 9 HOH A 180 680 225 HOH HOH . W 9 HOH A 181 681 214 HOH HOH . W 9 HOH A 182 682 84 HOH HOH . W 9 HOH A 183 683 161 HOH HOH . W 9 HOH A 184 684 179 HOH HOH . W 9 HOH A 185 685 174 HOH HOH . W 9 HOH A 186 686 207 HOH HOH . W 9 HOH A 187 687 71 HOH HOH . W 9 HOH A 188 688 257 HOH HOH . W 9 HOH A 189 689 63 HOH HOH . W 9 HOH A 190 690 238 HOH HOH . W 9 HOH A 191 691 211 HOH HOH . W 9 HOH A 192 692 80 HOH HOH . W 9 HOH A 193 693 148 HOH HOH . W 9 HOH A 194 694 41 HOH HOH . W 9 HOH A 195 695 56 HOH HOH . W 9 HOH A 196 696 170 HOH HOH . W 9 HOH A 197 697 194 HOH HOH . W 9 HOH A 198 698 64 HOH HOH . W 9 HOH A 199 699 230 HOH HOH . W 9 HOH A 200 700 60 HOH HOH . W 9 HOH A 201 701 212 HOH HOH . W 9 HOH A 202 702 245 HOH HOH . W 9 HOH A 203 703 215 HOH HOH . W 9 HOH A 204 704 218 HOH HOH . W 9 HOH A 205 705 216 HOH HOH . W 9 HOH A 206 706 190 HOH HOH . W 9 HOH A 207 707 183 HOH HOH . W 9 HOH A 208 708 229 HOH HOH . W 9 HOH A 209 709 154 HOH HOH . W 9 HOH A 210 710 53 HOH HOH . W 9 HOH A 211 711 213 HOH HOH . W 9 HOH A 212 712 266 HOH HOH . W 9 HOH A 213 713 228 HOH HOH . W 9 HOH A 214 714 210 HOH HOH . W 9 HOH A 215 715 251 HOH HOH . W 9 HOH A 216 716 249 HOH HOH . W 9 HOH A 217 717 42 HOH HOH . W 9 HOH A 218 718 265 HOH HOH . W 9 HOH A 219 719 188 HOH HOH . W 9 HOH A 220 720 232 HOH HOH . W 9 HOH A 221 721 252 HOH HOH . W 9 HOH A 222 722 61 HOH HOH . W 9 HOH A 223 723 247 HOH HOH . W 9 HOH A 224 724 70 HOH HOH . W 9 HOH A 225 725 58 HOH HOH . W 9 HOH A 226 726 81 HOH HOH . W 9 HOH A 227 727 250 HOH HOH . W 9 HOH A 228 728 254 HOH HOH . W 9 HOH A 229 729 255 HOH HOH . X 9 HOH D 1 201 219 HOH HOH . X 9 HOH D 2 202 49 HOH HOH . X 9 HOH D 3 203 75 HOH HOH . X 9 HOH D 4 204 224 HOH HOH . X 9 HOH D 5 205 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 6 -8.631 -25.289 -5.838 1 55.03 ? C1 EDO 411 A 1 HETATM 2 O O1 EDO . . . M 6 -9.787 -26.116 -5.833 1 60.63 ? O1 EDO 411 A 1 HETATM 3 C C2 EDO . . . M 6 -7.796 -25.638 -4.594 1 60.71 ? C2 EDO 411 A 1 HETATM 4 O O2 EDO . . . M 6 -6.472 -25.076 -4.552 1 60.13 ? O2 EDO 411 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 1095 _model_server_stats.encode_time_ms 32 _model_server_stats.element_count 4 #