data_7CL1 # _model_server_result.job_id EotKkB3zK_Hsb0VvHe_-Hw _model_server_result.datetime_utc '2024-11-18 06:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7CL1 # _exptl.entry_id 7CL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CL1 _cell.length_a 162.807 _cell.length_b 162.807 _cell.length_c 162.807 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 5 C LYS 5 1_555 L CAP G4X . C G4X 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? metalc ? metalc1 A SG CYS 141 A CYS 139 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A SG CYS 144 A CYS 142 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A SG CYS 166 A CYS 164 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A SG CYS 177 A CYS 175 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id AR6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Adenosine-5-Diphosphoribose # _atom_sites.entry_id 7CL1 _atom_sites.fract_transf_matrix[1][1] 0.006142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AR6 A 1 401 1 AR6 AR6 . D 4 ZN A 1 402 1 ZN ZN . E 5 8L9 A 1 403 1 8L9 318 . F 6 GOL A 1 404 1 GOL GOL . G 6 GOL A 1 405 2 GOL GOL . H 6 GOL A 1 406 3 GOL GOL . I 6 GOL A 1 407 4 GOL GOL . J 7 SO4 A 1 408 2 SO4 SO4 . K 8 PEG A 1 409 1 PEG PEG . L 9 G4X C 1 101 1 G4X PLM . M 7 SO4 C 1 102 1 SO4 SO4 . N 10 HOH A 1 501 7 HOH HOH . N 10 HOH A 2 502 6 HOH HOH . N 10 HOH A 3 503 24 HOH HOH . N 10 HOH A 4 504 37 HOH HOH . N 10 HOH A 5 505 5 HOH HOH . N 10 HOH A 6 506 1 HOH HOH . N 10 HOH A 7 507 20 HOH HOH . N 10 HOH A 8 508 26 HOH HOH . N 10 HOH A 9 509 8 HOH HOH . N 10 HOH A 10 510 13 HOH HOH . N 10 HOH A 11 511 2 HOH HOH . N 10 HOH A 12 512 3 HOH HOH . N 10 HOH A 13 513 22 HOH HOH . N 10 HOH A 14 514 11 HOH HOH . N 10 HOH A 15 515 4 HOH HOH . N 10 HOH A 16 516 10 HOH HOH . N 10 HOH A 17 517 33 HOH HOH . N 10 HOH A 18 518 21 HOH HOH . N 10 HOH A 19 519 25 HOH HOH . N 10 HOH A 20 520 36 HOH HOH . N 10 HOH A 21 521 15 HOH HOH . N 10 HOH A 22 522 16 HOH HOH . N 10 HOH A 23 523 9 HOH HOH . N 10 HOH A 24 524 38 HOH HOH . N 10 HOH A 25 525 12 HOH HOH . N 10 HOH A 26 526 14 HOH HOH . N 10 HOH A 27 527 27 HOH HOH . N 10 HOH A 28 528 35 HOH HOH . N 10 HOH A 29 529 31 HOH HOH . N 10 HOH A 30 530 23 HOH HOH . N 10 HOH A 31 531 29 HOH HOH . N 10 HOH A 32 532 40 HOH HOH . N 10 HOH A 33 533 19 HOH HOH . N 10 HOH A 34 534 32 HOH HOH . N 10 HOH A 35 535 17 HOH HOH . N 10 HOH A 36 536 18 HOH HOH . O 10 HOH C 1 201 39 HOH HOH . O 10 HOH C 2 202 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AR6 . . . C 3 8.746 135.878 141.503 1 59.35 ? N1 AR6 401 A 1 HETATM 2 C C2 AR6 . . . C 3 8.528 137.182 141.713 1 57.31 ? C2 AR6 401 A 1 HETATM 3 N N3 AR6 . . . C 3 7.397 137.618 142.272 1 54.93 ? N3 AR6 401 A 1 HETATM 4 C C4 AR6 . . . C 3 6.436 136.751 142.649 1 55.22 ? C4 AR6 401 A 1 HETATM 5 C C5 AR6 . . . C 3 6.596 135.313 142.459 1 56.31 ? C5 AR6 401 A 1 HETATM 6 C C6 AR6 . . . C 3 7.858 134.914 141.844 1 60.6 ? C6 AR6 401 A 1 HETATM 7 N N6 AR6 . . . C 3 8.104 133.608 141.63 1 68.51 ? N6 AR6 401 A 1 HETATM 8 N N7 AR6 . . . C 3 5.501 134.699 142.921 1 55.85 ? N7 AR6 401 A 1 HETATM 9 C C8 AR6 . . . C 3 4.689 135.693 143.379 1 58.63 ? C8 AR6 401 A 1 HETATM 10 N N9 AR6 . . . C 3 5.262 136.909 143.202 1 56.87 ? N9 AR6 401 A 1 HETATM 11 P PA AR6 . . . C 3 1.973 139.946 148.589 1 48.6 ? PA AR6 401 A 1 HETATM 12 P PB AR6 . . . C 3 3.763 140.425 150.778 1 49.61 ? PB AR6 401 A 1 HETATM 13 C C1' AR6 . . . C 3 4.804 138.267 143.558 1 57.42 ? C1' AR6 401 A 1 HETATM 14 O O1A AR6 . . . C 3 1.3 141.272 148.877 1 49.64 ? O1A AR6 401 A 1 HETATM 15 O O1B AR6 . . . C 3 4.262 141.599 149.99 1 48.25 ? O1B AR6 401 A 1 HETATM 16 C C1D AR6 . . . C 3 0.099 139.944 154.476 1 51.76 ? C1D AR6 401 A 1 HETATM 17 O O1D AR6 . . . C 3 -0.998 140.394 155.239 1 49.76 ? O1D AR6 401 A 1 HETATM 18 C C2' AR6 . . . C 3 3.326 138.515 143.368 1 58.98 ? C2' AR6 401 A 1 HETATM 19 O O2' AR6 . . . C 3 3.048 138.871 142.004 1 59.53 ? O2' AR6 401 A 1 HETATM 20 O O2A AR6 . . . C 3 1.106 138.767 148.23 1 49.57 ? O2A AR6 401 A 1 HETATM 21 O O2B AR6 . . . C 3 4.742 139.55 151.517 1 53.05 ? O2B AR6 401 A 1 HETATM 22 C C2D AR6 . . . C 3 1.145 139.237 155.331 1 55.86 ? C2D AR6 401 A 1 HETATM 23 O O2D AR6 . . . C 3 1.231 139.699 156.685 1 57.22 ? O2D AR6 401 A 1 HETATM 24 C C3' AR6 . . . C 3 3.049 139.564 144.446 1 55.66 ? C3' AR6 401 A 1 HETATM 25 O O3' AR6 . . . C 3 3.022 140.879 143.923 1 54.14 ? O3' AR6 401 A 1 HETATM 26 O O3A AR6 . . . C 3 2.887 139.461 149.832 1 49.37 ? O3A AR6 401 A 1 HETATM 27 C C3D AR6 . . . C 3 2.419 139.578 154.598 1 55.82 ? C3D AR6 401 A 1 HETATM 28 O O3D AR6 . . . C 3 3.589 139.4 155.402 1 55.98 ? O3D AR6 401 A 1 HETATM 29 C C4' AR6 . . . C 3 4.204 139.48 145.439 1 53.71 ? C4' AR6 401 A 1 HETATM 30 O O4' AR6 . . . C 3 5.094 138.481 144.947 1 54.23 ? O4' AR6 401 A 1 HETATM 31 C C4D AR6 . . . C 3 2.15 141.019 154.22 1 55.17 ? C4D AR6 401 A 1 HETATM 32 O O4D AR6 . . . C 3 0.754 141.054 153.877 1 52.34 ? O4D AR6 401 A 1 HETATM 33 C C5' AR6 . . . C 3 3.752 139.109 146.83 1 51.66 ? C5' AR6 401 A 1 HETATM 34 O O5' AR6 . . . C 3 3.009 140.188 147.378 1 49.93 ? O5' AR6 401 A 1 HETATM 35 C C5D AR6 . . . C 3 3.064 141.497 153.092 1 55.85 ? C5D AR6 401 A 1 HETATM 36 O O5D AR6 . . . C 3 2.672 140.929 151.84 1 53.56 ? O5D AR6 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #