data_7CLK
#
_model_server_result.job_id            X8_aE3IUJaZP3zYiHq_xPA 
_model_server_result.datetime_utc      '2024-10-20 07:34:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7clk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":515}' 
#
_entry.id    7CLK 
#
_exptl.entry_id    7CLK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CLK 
_cell.length_a            139.804 
_cell.length_b            139.804 
_cell.length_c            89.645 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CLK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 248 A ASP 241 1_555 N MG MG . A MG 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc2 A OE2 GLU 290 A GLU 283 1_555 N MG MG . A MG 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc3 A OD2 ASP 317 A ASP 310 1_555 N MG MG . A MG 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc4 N MG MG . A MG 513 1_555 O O1 2PG . A 2PG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc5 N MG MG . A MG 513 1_555 Q O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc6 N MG MG . A MG 513 1_555 Q O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 106 n n 
C1 C2 EDO sing 107 n n 
C1 H11 EDO sing 108 n n 
C1 H12 EDO sing 109 n n 
O1 HO1 EDO sing 110 n n 
C2 O2 EDO sing 111 n n 
C2 H21 EDO sing 112 n n 
C2 H22 EDO sing 113 n n 
O2 HO2 EDO sing 114 n n 
#
_atom_sites.entry_id                     7CLK 
_atom_sites.fract_transf_matrix[1][1]    0.007153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 424 EDO EDO . 
C 2 EDO A 1 502 425 EDO EDO . 
D 2 EDO A 1 503 426 EDO EDO . 
E 2 EDO A 1 504 427 EDO EDO . 
F 2 EDO A 1 505 429 EDO EDO . 
G 2 EDO A 1 506 430 EDO EDO . 
H 3 ACT A 1 507 431 ACT ACT . 
I 3 ACT A 1 508 432 ACT ACT . 
J 3 ACT A 1 509 433 ACT ACT . 
K 3 ACT A 1 510 435 ACT ACT . 
L 3 ACT A 1 511 436 ACT ACT . 
M 3 ACT A 1 512 437 ACT ACT . 
N 4 MG A 1 513 438 MG MG . 
O 5 2PG A 1 514 439 2PG 2PG . 
P 2 EDO A 1 515 801 EDO EDO . 
Q 6 HOH A 1 601 605 HOH HOH . 
Q 6 HOH A 2 602 526 HOH HOH . 
Q 6 HOH A 3 603 482 HOH HOH . 
Q 6 HOH A 4 604 493 HOH HOH . 
Q 6 HOH A 5 605 569 HOH HOH . 
Q 6 HOH A 6 606 523 HOH HOH . 
Q 6 HOH A 7 607 618 HOH HOH . 
Q 6 HOH A 8 608 491 HOH HOH . 
Q 6 HOH A 9 609 536 HOH HOH . 
Q 6 HOH A 10 610 612 HOH HOH . 
Q 6 HOH A 11 611 466 HOH HOH . 
Q 6 HOH A 12 612 596 HOH HOH . 
Q 6 HOH A 13 613 570 HOH HOH . 
Q 6 HOH A 14 614 552 HOH HOH . 
Q 6 HOH A 15 615 504 HOH HOH . 
Q 6 HOH A 16 616 601 HOH HOH . 
Q 6 HOH A 17 617 445 HOH HOH . 
Q 6 HOH A 18 618 566 HOH HOH . 
Q 6 HOH A 19 619 564 HOH HOH . 
Q 6 HOH A 20 620 578 HOH HOH . 
Q 6 HOH A 21 621 495 HOH HOH . 
Q 6 HOH A 22 622 602 HOH HOH . 
Q 6 HOH A 23 623 451 HOH HOH . 
Q 6 HOH A 24 624 453 HOH HOH . 
Q 6 HOH A 25 625 465 HOH HOH . 
Q 6 HOH A 26 626 609 HOH HOH . 
Q 6 HOH A 27 627 550 HOH HOH . 
Q 6 HOH A 28 628 573 HOH HOH . 
Q 6 HOH A 29 629 517 HOH HOH . 
Q 6 HOH A 30 630 587 HOH HOH . 
Q 6 HOH A 31 631 447 HOH HOH . 
Q 6 HOH A 32 632 494 HOH HOH . 
Q 6 HOH A 33 633 530 HOH HOH . 
Q 6 HOH A 34 634 558 HOH HOH . 
Q 6 HOH A 35 635 539 HOH HOH . 
Q 6 HOH A 36 636 591 HOH HOH . 
Q 6 HOH A 37 637 555 HOH HOH . 
Q 6 HOH A 38 638 499 HOH HOH . 
Q 6 HOH A 39 639 444 HOH HOH . 
Q 6 HOH A 40 640 524 HOH HOH . 
Q 6 HOH A 41 641 544 HOH HOH . 
Q 6 HOH A 42 642 488 HOH HOH . 
Q 6 HOH A 43 643 541 HOH HOH . 
Q 6 HOH A 44 644 490 HOH HOH . 
Q 6 HOH A 45 645 528 HOH HOH . 
Q 6 HOH A 46 646 537 HOH HOH . 
Q 6 HOH A 47 647 455 HOH HOH . 
Q 6 HOH A 48 648 468 HOH HOH . 
Q 6 HOH A 49 649 459 HOH HOH . 
Q 6 HOH A 50 650 454 HOH HOH . 
Q 6 HOH A 51 651 479 HOH HOH . 
Q 6 HOH A 52 652 507 HOH HOH . 
Q 6 HOH A 53 653 463 HOH HOH . 
Q 6 HOH A 54 654 467 HOH HOH . 
Q 6 HOH A 55 655 469 HOH HOH . 
Q 6 HOH A 56 656 446 HOH HOH . 
Q 6 HOH A 57 657 561 HOH HOH . 
Q 6 HOH A 58 658 594 HOH HOH . 
Q 6 HOH A 59 659 598 HOH HOH . 
Q 6 HOH A 60 660 560 HOH HOH . 
Q 6 HOH A 61 661 617 HOH HOH . 
Q 6 HOH A 62 662 498 HOH HOH . 
Q 6 HOH A 63 663 460 HOH HOH . 
Q 6 HOH A 64 664 512 HOH HOH . 
Q 6 HOH A 65 665 442 HOH HOH . 
Q 6 HOH A 66 666 441 HOH HOH . 
Q 6 HOH A 67 667 470 HOH HOH . 
Q 6 HOH A 68 668 462 HOH HOH . 
Q 6 HOH A 69 669 522 HOH HOH . 
Q 6 HOH A 70 670 502 HOH HOH . 
Q 6 HOH A 71 671 452 HOH HOH . 
Q 6 HOH A 72 672 509 HOH HOH . 
Q 6 HOH A 73 673 481 HOH HOH . 
Q 6 HOH A 74 674 2 HOH HOH . 
Q 6 HOH A 75 675 543 HOH HOH . 
Q 6 HOH A 76 676 472 HOH HOH . 
Q 6 HOH A 77 677 545 HOH HOH . 
Q 6 HOH A 78 678 449 HOH HOH . 
Q 6 HOH A 79 679 529 HOH HOH . 
Q 6 HOH A 80 680 542 HOH HOH . 
Q 6 HOH A 81 681 607 HOH HOH . 
Q 6 HOH A 82 682 501 HOH HOH . 
Q 6 HOH A 83 683 483 HOH HOH . 
Q 6 HOH A 84 684 516 HOH HOH . 
Q 6 HOH A 85 685 478 HOH HOH . 
Q 6 HOH A 86 686 464 HOH HOH . 
Q 6 HOH A 87 687 461 HOH HOH . 
Q 6 HOH A 88 688 576 HOH HOH . 
Q 6 HOH A 89 689 497 HOH HOH . 
Q 6 HOH A 90 690 480 HOH HOH . 
Q 6 HOH A 91 691 443 HOH HOH . 
Q 6 HOH A 92 692 597 HOH HOH . 
Q 6 HOH A 93 693 486 HOH HOH . 
Q 6 HOH A 94 694 511 HOH HOH . 
Q 6 HOH A 95 695 572 HOH HOH . 
Q 6 HOH A 96 696 527 HOH HOH . 
Q 6 HOH A 97 697 456 HOH HOH . 
Q 6 HOH A 98 698 531 HOH HOH . 
Q 6 HOH A 99 699 450 HOH HOH . 
Q 6 HOH A 100 700 448 HOH HOH . 
Q 6 HOH A 101 701 520 HOH HOH . 
Q 6 HOH A 102 702 580 HOH HOH . 
Q 6 HOH A 103 703 595 HOH HOH . 
Q 6 HOH A 104 704 500 HOH HOH . 
Q 6 HOH A 105 705 588 HOH HOH . 
Q 6 HOH A 106 706 471 HOH HOH . 
Q 6 HOH A 107 707 496 HOH HOH . 
Q 6 HOH A 108 708 532 HOH HOH . 
Q 6 HOH A 109 709 477 HOH HOH . 
Q 6 HOH A 110 710 487 HOH HOH . 
Q 6 HOH A 111 711 608 HOH HOH . 
Q 6 HOH A 112 712 457 HOH HOH . 
Q 6 HOH A 113 713 610 HOH HOH . 
Q 6 HOH A 114 714 547 HOH HOH . 
Q 6 HOH A 115 715 474 HOH HOH . 
Q 6 HOH A 116 716 484 HOH HOH . 
Q 6 HOH A 117 717 557 HOH HOH . 
Q 6 HOH A 118 718 475 HOH HOH . 
Q 6 HOH A 119 719 521 HOH HOH . 
Q 6 HOH A 120 720 546 HOH HOH . 
Q 6 HOH A 121 721 534 HOH HOH . 
Q 6 HOH A 122 722 473 HOH HOH . 
Q 6 HOH A 123 723 606 HOH HOH . 
Q 6 HOH A 124 724 565 HOH HOH . 
Q 6 HOH A 125 725 575 HOH HOH . 
Q 6 HOH A 126 726 577 HOH HOH . 
Q 6 HOH A 127 727 506 HOH HOH . 
Q 6 HOH A 128 728 619 HOH HOH . 
Q 6 HOH A 129 729 535 HOH HOH . 
Q 6 HOH A 130 730 540 HOH HOH . 
Q 6 HOH A 131 731 568 HOH HOH . 
Q 6 HOH A 132 732 503 HOH HOH . 
Q 6 HOH A 133 733 583 HOH HOH . 
Q 6 HOH A 134 734 563 HOH HOH . 
Q 6 HOH A 135 735 533 HOH HOH . 
Q 6 HOH A 136 736 549 HOH HOH . 
Q 6 HOH A 137 737 492 HOH HOH . 
Q 6 HOH A 138 738 1 HOH HOH . 
Q 6 HOH A 139 739 485 HOH HOH . 
Q 6 HOH A 140 740 510 HOH HOH . 
Q 6 HOH A 141 741 514 HOH HOH . 
Q 6 HOH A 142 742 571 HOH HOH . 
Q 6 HOH A 143 743 611 HOH HOH . 
Q 6 HOH A 144 744 581 HOH HOH . 
Q 6 HOH A 145 745 513 HOH HOH . 
Q 6 HOH A 146 746 556 HOH HOH . 
Q 6 HOH A 147 747 584 HOH HOH . 
Q 6 HOH A 148 748 548 HOH HOH . 
Q 6 HOH A 149 749 590 HOH HOH . 
Q 6 HOH A 150 750 553 HOH HOH . 
Q 6 HOH A 151 751 525 HOH HOH . 
Q 6 HOH A 152 752 440 HOH HOH . 
Q 6 HOH A 153 753 614 HOH HOH . 
Q 6 HOH A 154 754 518 HOH HOH . 
Q 6 HOH A 155 755 579 HOH HOH . 
Q 6 HOH A 156 756 574 HOH HOH . 
Q 6 HOH A 157 757 489 HOH HOH . 
Q 6 HOH A 158 758 593 HOH HOH . 
Q 6 HOH A 159 759 515 HOH HOH . 
Q 6 HOH A 160 760 592 HOH HOH . 
Q 6 HOH A 161 761 519 HOH HOH . 
Q 6 HOH A 162 762 616 HOH HOH . 
Q 6 HOH A 163 763 582 HOH HOH . 
Q 6 HOH A 164 764 551 HOH HOH . 
Q 6 HOH A 165 765 600 HOH HOH . 
Q 6 HOH A 166 766 585 HOH HOH . 
Q 6 HOH A 167 767 586 HOH HOH . 
Q 6 HOH A 168 768 613 HOH HOH . 
Q 6 HOH A 169 769 615 HOH HOH . 
Q 6 HOH A 170 770 3 HOH HOH . 
Q 6 HOH A 171 771 589 HOH HOH . 
Q 6 HOH A 172 772 599 HOH HOH . 
Q 6 HOH A 173 773 458 HOH HOH . 
Q 6 HOH A 174 774 4 HOH HOH . 
Q 6 HOH A 175 775 5 HOH HOH . 
Q 6 HOH A 176 776 559 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . P 2 3.56 -49.618 -17.44 1 40.93 ? C1 EDO 515 A 1 
HETATM 2 O O1 EDO . . . P 2 3.899 -48.276 -16.875 1 39.18 ? O1 EDO 515 A 1 
HETATM 3 C C2 EDO . . . P 2 4.562 -50.302 -18.389 1 43.31 ? C2 EDO 515 A 1 
HETATM 4 O O2 EDO . . . P 2 5.363 -51.445 -17.828 1 42.49 ? O2 EDO 515 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#