data_7CM3 # _model_server_result.job_id ZgefJ7pI4_bsXCa3V3EBYg _model_server_result.datetime_utc '2024-11-04 22:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1806}' # _entry.id 7CM3 # _exptl.entry_id 7CM3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CM3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 2 NAG 3 n C NAG 2 C 2 NAG A 1 NAG 4 n D NAG 1 D 1 NAG A 3 NAG 4 n D NAG 2 D 2 NAG A 4 NAG 4 n D BMA 3 D 3 BMA A 5 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 246 B CYS 246 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 210 A ASN 210 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 216 A ASN 216 1_555 E C1 NAG . A NAG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale4 B ND2 ASN 217 B ASN 217 1_555 P C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 7CM3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 1801 6 NAG NAG . F 6 PC1 A 1 1802 1801 PC1 PC1 . G 6 PC1 A 1 1803 1802 PC1 PC1 . H 6 PC1 A 1 1804 1803 PC1 PC1 . I 6 PC1 A 1 1805 1804 PC1 PC1 . J 6 PC1 A 1 1806 1805 PC1 PC1 . K 6 PC1 A 1 1807 1806 PC1 PC1 . L 6 PC1 A 1 1808 1807 PC1 PC1 . M 6 PC1 A 1 1809 1808 PC1 PC1 . N 6 PC1 A 1 1810 1809 PC1 PC1 . O 6 PC1 A 1 1811 1810 PC1 PC1 . P 5 NAG B 1 501 7 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . J 6 112.191 153.674 139.112 1 20 ? O12 PC1 1806 A 1 HETATM 2 P P PC1 . . . J 6 112.799 154.682 140.036 1 20 ? P PC1 1806 A 1 HETATM 3 O O14 PC1 . . . J 6 112.637 156.141 139.762 1 20 ? O14 PC1 1806 A 1 HETATM 4 O O13 PC1 . . . J 6 112.124 154.52 141.484 1 20 ? O13 PC1 1806 A 1 HETATM 5 C C11 PC1 . . . J 6 111.768 155.698 142.27 1 20 ? C11 PC1 1806 A 1 HETATM 6 C C12 PC1 . . . J 6 110.677 156.488 141.588 1 20 ? C12 PC1 1806 A 1 HETATM 7 N N PC1 . . . J 6 110.768 158.002 141.665 1 20 ? N PC1 1806 A 1 HETATM 8 C C13 PC1 . . . J 6 111.274 158.417 142.99 1 20 ? C13 PC1 1806 A 1 HETATM 9 C C14 PC1 . . . J 6 111.668 158.523 140.601 1 20 ? C14 PC1 1806 A 1 HETATM 10 C C15 PC1 . . . J 6 109.433 158.607 141.482 1 20 ? C15 PC1 1806 A 1 HETATM 11 O O11 PC1 . . . J 6 114.377 154.474 140.13 1 20 ? O11 PC1 1806 A 1 HETATM 12 C C1 PC1 . . . J 6 115.229 155.614 140.24 1 20 ? C1 PC1 1806 A 1 HETATM 13 C C2 PC1 . . . J 6 116.317 155.456 139.214 1 20 ? C2 PC1 1806 A 1 HETATM 14 O O21 PC1 . . . J 6 117.147 154.433 139.798 1 20 ? O21 PC1 1806 A 1 HETATM 15 C C21 PC1 . . . J 6 118.271 154.071 139.219 1 20 ? C21 PC1 1806 A 1 HETATM 16 O O22 PC1 . . . J 6 118.486 152.953 139.105 1 20 ? O22 PC1 1806 A 1 HETATM 17 C C22 PC1 . . . J 6 119.285 155.025 138.847 1 20 ? C22 PC1 1806 A 1 HETATM 18 C C23 PC1 . . . J 6 120.631 154.56 139.155 1 20 ? C23 PC1 1806 A 1 HETATM 19 C C24 PC1 . . . J 6 121.036 153.486 138.221 1 20 ? C24 PC1 1806 A 1 HETATM 20 C C25 PC1 . . . J 6 121.991 154 137.251 1 20 ? C25 PC1 1806 A 1 HETATM 21 C C26 PC1 . . . J 6 123.341 154.26 137.782 1 20 ? C26 PC1 1806 A 1 HETATM 22 C C27 PC1 . . . J 6 124.394 153.677 136.902 1 20 ? C27 PC1 1806 A 1 HETATM 23 C C28 PC1 . . . J 6 125.733 154.309 137.001 1 20 ? C28 PC1 1806 A 1 HETATM 24 C C29 PC1 . . . J 6 126.859 153.317 136.977 1 20 ? C29 PC1 1806 A 1 HETATM 25 C C2A PC1 . . . J 6 127.737 153.398 135.758 1 20 ? C2A PC1 1806 A 1 HETATM 26 C C2B PC1 . . . J 6 129.16 152.98 135.973 1 20 ? C2B PC1 1806 A 1 HETATM 27 C C2C PC1 . . . J 6 129.851 152.533 134.728 1 20 ? C2C PC1 1806 A 1 HETATM 28 C C3 PC1 . . . J 6 117.039 156.752 138.93 1 20 ? C3 PC1 1806 A 1 HETATM 29 O O31 PC1 . . . J 6 117.131 157.517 140.146 1 20 ? O31 PC1 1806 A 1 HETATM 30 C C31 PC1 . . . J 6 116.965 158.812 140.031 1 20 ? C31 PC1 1806 A 1 HETATM 31 O O32 PC1 . . . J 6 115.957 159.355 140.33 1 20 ? O32 PC1 1806 A 1 HETATM 32 C C32 PC1 . . . J 6 118.147 159.46 139.424 1 20 ? C32 PC1 1806 A 1 HETATM 33 C C33 PC1 . . . J 6 119.427 158.914 139.89 1 20 ? C33 PC1 1806 A 1 HETATM 34 C C34 PC1 . . . J 6 120.401 158.725 138.765 1 20 ? C34 PC1 1806 A 1 HETATM 35 C C35 PC1 . . . J 6 121.823 158.935 139.142 1 20 ? C35 PC1 1806 A 1 HETATM 36 C C36 PC1 . . . J 6 122.659 157.699 139.043 1 20 ? C36 PC1 1806 A 1 HETATM 37 C C37 PC1 . . . J 6 124.134 157.96 139.017 1 20 ? C37 PC1 1806 A 1 HETATM 38 C C38 PC1 . . . J 6 124.974 156.728 138.844 1 20 ? C38 PC1 1806 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #