data_7CM4 # _model_server_result.job_id jMel6soXwyRuZexpJLhM8g _model_server_result.datetime_utc '2024-10-11 17:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 7CM4 # _exptl.entry_id 7CM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CM4 _cell.length_a 65.55 _cell.length_b 167.6 _cell.length_c 169.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN MAN C1 O1 . O6 HO6 . sing 4 ? 4 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 702 NAG 4 n D NAG 2 B 2 NAG A 703 NAG 4 n D MAN 3 B 3 MAN A 704 MAN 4 n D MAN 4 B 4 MAN A 706 MAN 4 n D FUC 5 B 5 FUC A 701 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 B SG CYS 155 H CYS 155 1_555 B SG CYS 211 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 C SG CYS 22 L CYS 22 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 138 L CYS 138 1_555 C SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 D O6 NAG . B NAG 1 1_555 D C1 FUC . B FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 D O4 NAG . B NAG 2 1_555 D C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 D O6 MAN . B MAN 3 1_555 D C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? metalc ? metalc1 C NE2 HIS 192 L HIS 192 1_555 H NI NI . L NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7CM4 _atom_sites.fract_transf_matrix[1][1] 0.015256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NI H 1 501 1 NI NI . F 6 EDO L 1 301 1 EDO EDO . G 6 EDO L 1 302 2 EDO EDO . H 5 NI L 1 303 2 NI NI . I 7 HOH A 1 601 60 HOH HOH . I 7 HOH A 2 602 6 HOH HOH . I 7 HOH A 3 603 56 HOH HOH . I 7 HOH A 4 604 46 HOH HOH . I 7 HOH A 5 605 58 HOH HOH . I 7 HOH A 6 606 17 HOH HOH . I 7 HOH A 7 607 11 HOH HOH . I 7 HOH A 8 608 32 HOH HOH . I 7 HOH A 9 609 57 HOH HOH . I 7 HOH A 10 610 12 HOH HOH . I 7 HOH A 11 611 2 HOH HOH . I 7 HOH A 12 612 1 HOH HOH . I 7 HOH A 13 613 65 HOH HOH . I 7 HOH A 14 614 64 HOH HOH . J 7 HOH H 1 601 29 HOH HOH . J 7 HOH H 2 602 30 HOH HOH . J 7 HOH H 3 603 26 HOH HOH . J 7 HOH H 4 604 38 HOH HOH . J 7 HOH H 5 605 35 HOH HOH . J 7 HOH H 6 606 41 HOH HOH . J 7 HOH H 7 607 7 HOH HOH . J 7 HOH H 8 608 20 HOH HOH . J 7 HOH H 9 609 59 HOH HOH . J 7 HOH H 10 610 28 HOH HOH . J 7 HOH H 11 611 31 HOH HOH . J 7 HOH H 12 612 27 HOH HOH . J 7 HOH H 13 613 62 HOH HOH . J 7 HOH H 14 614 24 HOH HOH . J 7 HOH H 15 615 37 HOH HOH . J 7 HOH H 16 616 15 HOH HOH . J 7 HOH H 17 617 36 HOH HOH . J 7 HOH H 18 618 25 HOH HOH . J 7 HOH H 19 619 33 HOH HOH . J 7 HOH H 20 620 21 HOH HOH . J 7 HOH H 21 621 14 HOH HOH . J 7 HOH H 22 622 16 HOH HOH . J 7 HOH H 23 623 22 HOH HOH . J 7 HOH H 24 624 34 HOH HOH . J 7 HOH H 25 625 3 HOH HOH . J 7 HOH H 26 626 18 HOH HOH . J 7 HOH H 27 627 39 HOH HOH . J 7 HOH H 28 628 63 HOH HOH . J 7 HOH H 29 629 19 HOH HOH . J 7 HOH H 30 630 40 HOH HOH . K 7 HOH L 1 401 61 HOH HOH . K 7 HOH L 2 402 23 HOH HOH . K 7 HOH L 3 403 55 HOH HOH . K 7 HOH L 4 404 54 HOH HOH . K 7 HOH L 5 405 48 HOH HOH . K 7 HOH L 6 406 13 HOH HOH . K 7 HOH L 7 407 5 HOH HOH . K 7 HOH L 8 408 9 HOH HOH . K 7 HOH L 9 409 43 HOH HOH . K 7 HOH L 10 410 51 HOH HOH . K 7 HOH L 11 411 49 HOH HOH . K 7 HOH L 12 412 10 HOH HOH . K 7 HOH L 13 413 8 HOH HOH . K 7 HOH L 14 414 53 HOH HOH . K 7 HOH L 15 415 44 HOH HOH . K 7 HOH L 16 416 42 HOH HOH . K 7 HOH L 17 417 4 HOH HOH . K 7 HOH L 18 418 45 HOH HOH . K 7 HOH L 19 419 47 HOH HOH . K 7 HOH L 20 420 50 HOH HOH . K 7 HOH L 21 421 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 -54.232 -69.807 -28.137 1 82.99 ? C1 EDO 302 L 1 HETATM 2 O O1 EDO . . . G 6 -54.084 -69.449 -29.519 1 82.99 ? O1 EDO 302 L 1 HETATM 3 C C2 EDO . . . G 6 -55.386 -70.797 -27.983 1 82.99 ? C2 EDO 302 L 1 HETATM 4 O O2 EDO . . . G 6 -55.338 -71.436 -26.699 1 82.99 ? O2 EDO 302 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #