data_7CM8
#
_model_server_result.job_id            2pn2EgvhdiAiguWlGbZ-QA 
_model_server_result.datetime_utc      '2024-10-19 21:38:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7CM8 
#
_exptl.entry_id    7CM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CM8 
_cell.length_a            112.44 
_cell.length_b            112.44 
_cell.length_c            44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 75 A VAL 41 1_555 A N LLP 76 A LLP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C LLP 76 A LLP 42 1_555 A N CYS 77 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
metalc ? metalc1 A O LEU 53 A LEU 19 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
metalc ? metalc2 A O PHE 56 A PHE 22 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? 
metalc ? metalc3 A OP2 LLP 76 A LLP 42 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc4 A O GLN 261 A GLN 227 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc5 A OG SER 306 A SER 272 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc6 A OG SER 306 A SER 272 1_555 F NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc7 A O SER 306 A SER 272 1_555 G NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc8 A OG SER 307 A SER 273 1_555 F NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc9 A OG SER 334 A SER 300 1_555 F NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc10 A OH TYR 339 A TYR 305 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc11 C NA NA . A NA 402 1_555 H O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? 
metalc ? metalc12 G NA NA . A NA 407 1_555 H O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7CM8 
_atom_sites.fract_transf_matrix[1][1]    0.008894 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022727 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 401 NA NA . 
C 2 NA A 1 402 402 NA NA . 
D 3 GOL A 1 403 403 GOL GOL . 
E 2 NA A 1 404 404 NA NA . 
F 2 NA A 1 406 406 NA NA . 
G 2 NA A 1 407 407 NA NA . 
H 4 HOH A 1 506 506 HOH HOH . 
H 4 HOH A 2 507 507 HOH HOH . 
H 4 HOH A 3 508 508 HOH HOH . 
H 4 HOH A 4 509 509 HOH HOH . 
H 4 HOH A 5 510 510 HOH HOH . 
H 4 HOH A 6 511 511 HOH HOH . 
H 4 HOH A 7 512 512 HOH HOH . 
H 4 HOH A 8 513 513 HOH HOH . 
H 4 HOH A 9 514 514 HOH HOH . 
H 4 HOH A 10 515 515 HOH HOH . 
H 4 HOH A 11 516 516 HOH HOH . 
H 4 HOH A 12 517 517 HOH HOH . 
H 4 HOH A 13 518 518 HOH HOH . 
H 4 HOH A 14 520 520 HOH HOH . 
H 4 HOH A 15 521 521 HOH HOH . 
H 4 HOH A 16 522 522 HOH HOH . 
H 4 HOH A 17 523 523 HOH HOH . 
H 4 HOH A 18 524 524 HOH HOH . 
H 4 HOH A 19 525 525 HOH HOH . 
H 4 HOH A 20 526 526 HOH HOH . 
H 4 HOH A 21 527 527 HOH HOH . 
H 4 HOH A 22 528 528 HOH HOH . 
H 4 HOH A 23 529 529 HOH HOH . 
H 4 HOH A 24 530 530 HOH HOH . 
H 4 HOH A 25 531 531 HOH HOH . 
H 4 HOH A 26 532 532 HOH HOH . 
H 4 HOH A 27 533 533 HOH HOH . 
H 4 HOH A 28 534 534 HOH HOH . 
H 4 HOH A 29 535 535 HOH HOH . 
H 4 HOH A 30 536 536 HOH HOH . 
H 4 HOH A 31 537 537 HOH HOH . 
H 4 HOH A 32 538 538 HOH HOH . 
H 4 HOH A 33 539 539 HOH HOH . 
H 4 HOH A 34 540 540 HOH HOH . 
H 4 HOH A 35 541 541 HOH HOH . 
H 4 HOH A 36 542 542 HOH HOH . 
H 4 HOH A 37 543 543 HOH HOH . 
H 4 HOH A 38 544 544 HOH HOH . 
H 4 HOH A 39 545 545 HOH HOH . 
H 4 HOH A 40 546 546 HOH HOH . 
H 4 HOH A 41 547 547 HOH HOH . 
H 4 HOH A 42 548 548 HOH HOH . 
H 4 HOH A 43 549 549 HOH HOH . 
H 4 HOH A 44 550 550 HOH HOH . 
H 4 HOH A 45 551 551 HOH HOH . 
H 4 HOH A 46 552 552 HOH HOH . 
H 4 HOH A 47 553 553 HOH HOH . 
H 4 HOH A 48 554 554 HOH HOH . 
H 4 HOH A 49 555 555 HOH HOH . 
H 4 HOH A 50 556 556 HOH HOH . 
H 4 HOH A 51 558 558 HOH HOH . 
H 4 HOH A 52 559 559 HOH HOH . 
H 4 HOH A 53 560 560 HOH HOH . 
H 4 HOH A 54 561 561 HOH HOH . 
H 4 HOH A 55 562 562 HOH HOH . 
H 4 HOH A 56 563 563 HOH HOH . 
H 4 HOH A 57 564 564 HOH HOH . 
H 4 HOH A 58 565 565 HOH HOH . 
H 4 HOH A 59 566 566 HOH HOH . 
H 4 HOH A 60 567 567 HOH HOH . 
H 4 HOH A 61 568 568 HOH HOH . 
H 4 HOH A 62 569 569 HOH HOH . 
H 4 HOH A 63 570 570 HOH HOH . 
H 4 HOH A 64 571 571 HOH HOH . 
H 4 HOH A 65 572 572 HOH HOH . 
H 4 HOH A 66 573 573 HOH HOH . 
H 4 HOH A 67 574 574 HOH HOH . 
H 4 HOH A 68 575 575 HOH HOH . 
H 4 HOH A 69 576 576 HOH HOH . 
H 4 HOH A 70 577 577 HOH HOH . 
H 4 HOH A 71 578 578 HOH HOH . 
H 4 HOH A 72 579 579 HOH HOH . 
H 4 HOH A 73 580 580 HOH HOH . 
H 4 HOH A 74 581 581 HOH HOH . 
H 4 HOH A 75 582 582 HOH HOH . 
H 4 HOH A 76 583 583 HOH HOH . 
H 4 HOH A 77 584 584 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 14.495 33.79 22.576 1 36.81 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 15.542 33.493 23.499 1 39.1 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 14.652 33.017 21.281 1 35.84 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 13.37 32.693 20.746 1 34.41 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 15.475 33.754 20.247 1 37.15 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 14.673 34.395 19.261 1 25.95 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#