data_7CMH # _model_server_result.job_id 9KAhNCC1hZzsKHrlKwXkgg _model_server_result.datetime_utc '2025-02-05 07:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7CMH # _exptl.entry_id 7CMH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CMH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 632 NAG 3 n C NAG 2 C 2 NAG A 633 NAG 3 n D NAG 1 D 1 NAG A 634 NAG 3 n D NAG 2 D 2 NAG A 635 NAG 3 n E NAG 1 E 1 NAG A 636 NAG 3 n E NAG 2 E 2 NAG A 637 NAG 3 n F NAG 1 F 1 NAG A 638 NAG 3 n F NAG 2 F 2 NAG A 639 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 174 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 458 n n N H TRP sing 459 n n N H2 TRP sing 460 n n CA C TRP sing 461 n n CA CB TRP sing 462 n n CA HA TRP sing 463 n n C O TRP doub 464 n n C OXT TRP sing 465 n n CB CG TRP sing 466 n n CB HB2 TRP sing 467 n n CB HB3 TRP sing 468 n n CG CD1 TRP doub 469 n y CG CD2 TRP sing 470 n y CD1 NE1 TRP sing 471 n y CD1 HD1 TRP sing 472 n n CD2 CE2 TRP doub 473 n y CD2 CE3 TRP sing 474 n y NE1 CE2 TRP sing 475 n y NE1 HE1 TRP sing 476 n n CE2 CZ2 TRP sing 477 n y CE3 CZ3 TRP doub 478 n y CE3 HE3 TRP sing 479 n n CZ2 CH2 TRP doub 480 n y CZ2 HZ2 TRP sing 481 n n CZ3 CH2 TRP sing 482 n y CZ3 HZ3 TRP sing 483 n n CH2 HH2 TRP sing 484 n n OXT HXT TRP sing 485 n n # _atom_sites.entry_id 7CMH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 TRP B 1 601 601 TRP TRP . H 5 3PH B 1 602 701 3PH 3PH . I 5 3PH B 1 603 702 3PH 3PH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . A . G 4 144.158 139.936 131.949 0.5 67.45 ? N TRP 601 B 1 HETATM 2 N N TRP . B . G 4 146.929 143.98 135.436 0.5 67.45 ? N TRP 601 B 1 HETATM 3 C CA TRP . A . G 4 145.549 139.706 132.32 0.5 67.45 ? CA TRP 601 B 1 HETATM 4 C CA TRP . B . G 4 146.269 144.291 134.174 0.5 67.45 ? CA TRP 601 B 1 HETATM 5 C C TRP . A . G 4 145.76 138.278 132.811 0.5 67.45 ? C TRP 601 B 1 HETATM 6 C C TRP . B . G 4 145.682 145.699 134.192 0.5 67.45 ? C TRP 601 B 1 HETATM 7 O O TRP . A . G 4 144.783 137.472 132.71 0.5 67.45 ? O TRP 601 B 1 HETATM 8 O O TRP . B . G 4 146.443 146.648 134.562 0.5 67.45 ? O TRP 601 B 1 HETATM 9 C CB TRP . A . G 4 145.989 140.703 133.395 0.5 67.45 ? CB TRP 601 B 1 HETATM 10 C CB TRP . B . G 4 145.171 143.268 133.877 0.5 67.45 ? CB TRP 601 B 1 HETATM 11 C CG TRP . A . G 4 145.709 142.131 133.039 0.5 67.45 ? CG TRP 601 B 1 HETATM 12 C CG TRP . B . G 4 145.568 142.241 132.86 0.5 67.45 ? CG TRP 601 B 1 HETATM 13 C CD1 TRP . A . G 4 144.847 142.584 132.084 0.5 67.45 ? CD1 TRP 601 B 1 HETATM 14 C CD1 TRP . B . G 4 146.39 141.17 133.055 0.5 67.45 ? CD1 TRP 601 B 1 HETATM 15 C CD2 TRP . A . G 4 146.294 143.294 133.636 0.5 67.45 ? CD2 TRP 601 B 1 HETATM 16 C CD2 TRP . B . G 4 145.159 142.189 131.488 0.5 67.45 ? CD2 TRP 601 B 1 HETATM 17 N NE1 TRP . A . G 4 144.859 143.957 132.048 0.5 67.45 ? NE1 TRP 601 B 1 HETATM 18 N NE1 TRP . B . G 4 146.518 140.454 131.889 0.5 67.45 ? NE1 TRP 601 B 1 HETATM 19 C CE2 TRP . A . G 4 145.739 144.418 132.991 0.5 67.45 ? CE2 TRP 601 B 1 HETATM 20 C CE2 TRP . B . G 4 145.772 141.059 130.912 0.5 67.45 ? CE2 TRP 601 B 1 HETATM 21 C CE3 TRP . A . G 4 147.233 143.496 134.653 0.5 67.45 ? CE3 TRP 601 B 1 HETATM 22 C CE3 TRP . B . G 4 144.334 142.988 130.69 0.5 67.45 ? CE3 TRP 601 B 1 HETATM 23 C CZ2 TRP . A . G 4 146.091 145.723 133.33 0.5 67.45 ? CZ2 TRP 601 B 1 HETATM 24 C CZ2 TRP . B . G 4 145.587 140.708 129.577 0.5 67.45 ? CZ2 TRP 601 B 1 HETATM 25 C CZ3 TRP . A . G 4 147.581 144.792 134.987 0.5 67.45 ? CZ3 TRP 601 B 1 HETATM 26 C CZ3 TRP . B . G 4 144.151 142.638 129.365 0.5 67.45 ? CZ3 TRP 601 B 1 HETATM 27 C CH2 TRP . A . G 4 147.012 145.888 134.328 0.5 67.45 ? CH2 TRP 601 B 1 HETATM 28 C CH2 TRP . B . G 4 144.775 141.508 128.821 0.5 67.45 ? CH2 TRP 601 B 1 HETATM 29 O OXT TRP . A . G 4 146.9 137.985 133.291 0.5 67.45 ? OXT TRP 601 B 1 HETATM 30 O OXT TRP . B . G 4 144.469 145.834 133.835 0.5 67.45 ? OXT TRP 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #