data_7CMR # _model_server_result.job_id uBKCRbXFBrRsHSbZaDynmA _model_server_result.datetime_utc '2024-12-23 06:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7CMR # _exptl.entry_id 7CMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CMR _cell.length_a 46.399 _cell.length_b 58.322 _cell.length_c 121.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 290 A HIS 273 1_555 A N ALY 291 A ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C ALY 291 A ALY 274 1_555 A N THR 292 A THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A SG CYS 227 A CYS 210 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A SG CYS 230 A CYS 213 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A NE2 HIS 243 A HIS 226 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A SG CYS 247 A CYS 230 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 7CMR _atom_sites.fract_transf_matrix[1][1] 0.021552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 GOL A 1 502 1 GOL GOL . D 4 HOH A 1 601 40 HOH HOH . D 4 HOH A 2 602 6 HOH HOH . D 4 HOH A 3 603 38 HOH HOH . D 4 HOH A 4 604 9 HOH HOH . D 4 HOH A 5 605 21 HOH HOH . D 4 HOH A 6 606 23 HOH HOH . D 4 HOH A 7 607 47 HOH HOH . D 4 HOH A 8 608 24 HOH HOH . D 4 HOH A 9 609 37 HOH HOH . D 4 HOH A 10 610 20 HOH HOH . D 4 HOH A 11 611 59 HOH HOH . D 4 HOH A 12 612 35 HOH HOH . D 4 HOH A 13 613 28 HOH HOH . D 4 HOH A 14 614 51 HOH HOH . D 4 HOH A 15 615 41 HOH HOH . D 4 HOH A 16 616 27 HOH HOH . D 4 HOH A 17 617 46 HOH HOH . D 4 HOH A 18 618 49 HOH HOH . D 4 HOH A 19 619 53 HOH HOH . D 4 HOH A 20 620 18 HOH HOH . D 4 HOH A 21 621 7 HOH HOH . D 4 HOH A 22 622 56 HOH HOH . D 4 HOH A 23 623 32 HOH HOH . D 4 HOH A 24 624 25 HOH HOH . D 4 HOH A 25 625 31 HOH HOH . D 4 HOH A 26 626 15 HOH HOH . D 4 HOH A 27 627 17 HOH HOH . D 4 HOH A 28 628 16 HOH HOH . D 4 HOH A 29 629 26 HOH HOH . D 4 HOH A 30 630 34 HOH HOH . D 4 HOH A 31 631 33 HOH HOH . D 4 HOH A 32 632 50 HOH HOH . D 4 HOH A 33 633 14 HOH HOH . D 4 HOH A 34 634 4 HOH HOH . D 4 HOH A 35 635 45 HOH HOH . D 4 HOH A 36 636 12 HOH HOH . D 4 HOH A 37 637 19 HOH HOH . D 4 HOH A 38 638 36 HOH HOH . D 4 HOH A 39 639 44 HOH HOH . D 4 HOH A 40 640 52 HOH HOH . D 4 HOH A 41 641 29 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 5 HOH HOH . D 4 HOH A 44 644 43 HOH HOH . D 4 HOH A 45 645 1 HOH HOH . D 4 HOH A 46 646 8 HOH HOH . D 4 HOH A 47 647 3 HOH HOH . D 4 HOH A 48 648 61 HOH HOH . D 4 HOH A 49 649 58 HOH HOH . D 4 HOH A 50 650 39 HOH HOH . D 4 HOH A 51 651 22 HOH HOH . D 4 HOH A 52 652 2 HOH HOH . D 4 HOH A 53 653 11 HOH HOH . D 4 HOH A 54 654 10 HOH HOH . D 4 HOH A 55 655 13 HOH HOH . D 4 HOH A 56 656 60 HOH HOH . D 4 HOH A 57 657 62 HOH HOH . D 4 HOH A 58 658 30 HOH HOH . D 4 HOH A 59 659 57 HOH HOH . D 4 HOH A 60 660 48 HOH HOH . D 4 HOH A 61 661 55 HOH HOH . D 4 HOH A 62 662 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -6.66 13.614 -19.995 1 54.14 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 -5.488 12.861 -20.291 1 53.8 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 -7.246 13.211 -18.66 1 53.9 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 -8.265 12.233 -18.865 1 55.39 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 -7.803 14.381 -17.88 1 52.07 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 -8.148 14.01 -16.549 1 50.13 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #