data_7COQ # _model_server_result.job_id yrE0lLU5v5nDGl4LPJ-kLQ _model_server_result.datetime_utc '2024-11-04 23:14:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7coq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 7COQ # _exptl.entry_id 7COQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.03 _cell.angle_gamma 90 _cell.entry_id 7COQ _cell.length_a 124.445 _cell.length_b 124.486 _cell.length_c 131.339 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7COQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 242 C THR 239 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc2 C OE2 GLU 264 C GLU 261 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc3 C OE2 GLU 268 C GLU 265 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc4 G MG MG . C MG 601 1_555 H O2G ANP . C ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 G MG MG . C MG 601 1_555 H O2B ANP . C ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7COQ _atom_sites.fract_transf_matrix[1][1] 0.008036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000425 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG C 1 601 1 MG MG . H 4 ANP C 1 602 1 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 4 52.525 4.249 43.389 1 98.04 ? PG ANP 602 C 1 HETATM 2 O O1G ANP . . . H 4 52.754 2.779 43.558 1 103.88 ? O1G ANP 602 C 1 HETATM 3 O O2G ANP . . . H 4 53.012 4.996 44.69 1 80.81 ? O2G ANP 602 C 1 HETATM 4 O O3G ANP . . . H 4 50.985 4.524 43.162 1 86.37 ? O3G ANP 602 C 1 HETATM 5 P PB ANP . . . H 4 53.883 6.381 42.323 1 89.5 ? PB ANP 602 C 1 HETATM 6 O O1B ANP . . . H 4 52.778 7.316 41.953 1 91.29 ? O1B ANP 602 C 1 HETATM 7 O O2B ANP . . . H 4 54.214 6.555 43.83 1 80.73 ? O2B ANP 602 C 1 HETATM 8 N N3B ANP . . . H 4 53.389 4.806 42.047 1 76.77 ? N3B ANP 602 C 1 HETATM 9 P PA ANP . . . H 4 56.373 7.412 42.21 1 78.51 ? PA ANP 602 C 1 HETATM 10 O O1A ANP . . . H 4 57.353 6.444 42.75 1 84.65 ? O1A ANP 602 C 1 HETATM 11 O O2A ANP . . . H 4 55.748 8.352 43.244 1 81.66 ? O2A ANP 602 C 1 HETATM 12 O O3A ANP . . . H 4 55.168 6.672 41.494 1 91.01 ? O3A ANP 602 C 1 HETATM 13 O O5' ANP . . . H 4 57.077 8.227 41.06 1 76.71 ? O5' ANP 602 C 1 HETATM 14 C C5' ANP . . . H 4 58.277 7.733 40.444 1 78.18 ? C5' ANP 602 C 1 HETATM 15 C C4' ANP . . . H 4 58.375 8.331 39.066 1 81.25 ? C4' ANP 602 C 1 HETATM 16 O O4' ANP . . . H 4 58.557 9.758 39.182 1 78.81 ? O4' ANP 602 C 1 HETATM 17 C C3' ANP . . . H 4 59.522 7.802 38.199 1 90.62 ? C3' ANP 602 C 1 HETATM 18 O O3' ANP . . . H 4 59.068 7.414 36.91 1 90.79 ? O3' ANP 602 C 1 HETATM 19 C C2' ANP . . . H 4 60.494 8.983 38.112 1 101.3 ? C2' ANP 602 C 1 HETATM 20 O O2' ANP . . . H 4 61.128 9.061 36.84 1 112 ? O2' ANP 602 C 1 HETATM 21 C C1' ANP . . . H 4 59.558 10.174 38.283 1 88.75 ? C1' ANP 602 C 1 HETATM 22 N N9 ANP . . . H 4 60.235 11.379 38.824 1 99.53 ? N9 ANP 602 C 1 HETATM 23 C C8 ANP . . . H 4 61.483 11.773 38.56 1 109.51 ? C8 ANP 602 C 1 HETATM 24 N N7 ANP . . . H 4 61.835 12.906 39.173 1 103.44 ? N7 ANP 602 C 1 HETATM 25 C C5 ANP . . . H 4 60.711 13.198 39.864 1 102.23 ? C5 ANP 602 C 1 HETATM 26 C C6 ANP . . . H 4 60.394 14.314 40.74 1 99.43 ? C6 ANP 602 C 1 HETATM 27 N N6 ANP . . . H 4 61.265 15.289 41.027 1 101.23 ? N6 ANP 602 C 1 HETATM 28 N N1 ANP . . . H 4 59.165 14.356 41.292 1 96.83 ? N1 ANP 602 C 1 HETATM 29 C C2 ANP . . . H 4 58.293 13.387 41.004 1 96.74 ? C2 ANP 602 C 1 HETATM 30 N N3 ANP . . . H 4 58.462 12.319 40.213 1 96.16 ? N3 ANP 602 C 1 HETATM 31 C C4 ANP . . . H 4 59.647 12.306 39.699 1 99.63 ? C4 ANP 602 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #