data_7CP3 # _model_server_result.job_id fQXjISlNjHqemRt9oLrEKA _model_server_result.datetime_utc '2024-11-22 21:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7CP3 # _exptl.entry_id 7CP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3R)-3-azanylpiperidin-1-yl]-[1-(2-azanylpyrimidin-4-yl)-6-[2-(1-oxidanylcyclohexyl)ethynyl]indol-3-yl]methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CP3 _cell.length_a 64.253 _cell.length_b 64.253 _cell.length_c 185.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 174 A LYS 473 1_555 A N SEP 175 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 175 A SEP 474 1_555 A N LEU 176 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C26 H30 N6 O2' _chem_comp.formula_weight 458.555 _chem_comp.id GC6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(3R)-3-azanylpiperidin-1-yl]-[1-(2-azanylpyrimidin-4-yl)-6-[2-(1-oxidanylcyclohexyl)ethynyl]indol-3-yl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 GC6 sing 83 n n C30 C31 GC6 sing 84 n n C29 C28 GC6 sing 85 n n C31 C25 GC6 sing 86 n n C4 N3 GC6 doub 87 n y C4 C5 GC6 sing 88 n y C28 C27 GC6 sing 89 n n N3 C2 GC6 sing 90 n y C25 C27 GC6 sing 91 n n C25 C24 GC6 sing 92 n n C25 O26 GC6 sing 93 n n C5 C6 GC6 doub 94 n y C2 N1 GC6 sing 95 n n C2 N34 GC6 doub 96 n y C24 C23 GC6 trip 97 n n C6 N34 GC6 sing 98 n y C6 N7 GC6 sing 99 n n C23 C22 GC6 sing 100 n n C32 C22 GC6 doub 101 n y C32 C33 GC6 sing 102 n y C22 C21 GC6 sing 103 n y N7 C33 GC6 sing 104 n y N7 C8 GC6 sing 105 n y C33 C19 GC6 doub 106 n y C8 C9 GC6 doub 107 n y C21 C20 GC6 doub 108 n y C19 C20 GC6 sing 109 n y C19 C9 GC6 sing 110 n y C9 C10 GC6 sing 111 n n O11 C10 GC6 doub 112 n n C10 N12 GC6 sing 113 n n N12 C13 GC6 sing 114 n n N12 C18 GC6 sing 115 n n C13 C14 GC6 sing 116 n n C18 C16 GC6 sing 117 n n C14 C15 GC6 sing 118 n n C16 C15 GC6 sing 119 n n C16 N17 GC6 sing 120 n n C13 H1 GC6 sing 121 n n C13 H2 GC6 sing 122 n n C15 H3 GC6 sing 123 n n C15 H4 GC6 sing 124 n n C20 H5 GC6 sing 125 n n C21 H6 GC6 sing 126 n n C28 H7 GC6 sing 127 n n C28 H8 GC6 sing 128 n n C4 H9 GC6 sing 129 n n C5 H10 GC6 sing 130 n n C8 H11 GC6 sing 131 n n C14 H12 GC6 sing 132 n n C14 H13 GC6 sing 133 n n C16 H14 GC6 sing 134 n n C18 H15 GC6 sing 135 n n C18 H16 GC6 sing 136 n n C27 H17 GC6 sing 137 n n C27 H18 GC6 sing 138 n n C29 H19 GC6 sing 139 n n C29 H20 GC6 sing 140 n n C30 H21 GC6 sing 141 n n C30 H22 GC6 sing 142 n n C31 H23 GC6 sing 143 n n C31 H24 GC6 sing 144 n n C32 H25 GC6 sing 145 n n N1 H26 GC6 sing 146 n n N1 H27 GC6 sing 147 n n N17 H28 GC6 sing 148 n n N17 H29 GC6 sing 149 n n O26 H31 GC6 sing 150 n n # _atom_sites.entry_id 7CP3 _atom_sites.fract_transf_matrix[1][1] 0.015563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GC6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id GC6 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GC6 . . . B 2 -34.025 15.005 -12.388 1 85.86 ? C10 GC6 601 A 1 HETATM 2 N N12 GC6 . . . B 2 -34.373 14.627 -10.998 1 86.14 ? N12 GC6 601 A 1 HETATM 3 C C13 GC6 . . . B 2 -34.422 13.204 -10.511 1 83.35 ? C13 GC6 601 A 1 HETATM 4 C C15 GC6 . . . B 2 -35.933 13.805 -8.643 1 99.52 ? C15 GC6 601 A 1 HETATM 5 C C20 GC6 . . . B 2 -31.082 14.086 -13.383 1 85.91 ? C20 GC6 601 A 1 HETATM 6 C C21 GC6 . . . B 2 -29.92 13.529 -13.948 1 88.19 ? C21 GC6 601 A 1 HETATM 7 C C22 GC6 . . . B 2 -30.028 12.469 -14.875 1 71.12 ? C22 GC6 601 A 1 HETATM 8 C C24 GC6 . . . B 2 -27.892 11.278 -16.049 1 79.11 ? C24 GC6 601 A 1 HETATM 9 C C28 GC6 . . . B 2 -26.023 8.052 -17.151 1 64.46 ? C28 GC6 601 A 1 HETATM 10 C C2 GC6 . . . B 2 -36.042 9.853 -16.302 1 82.58 ? C2 GC6 601 A 1 HETATM 11 C C4 GC6 . . . B 2 -34.146 9.729 -17.612 1 73.75 ? C4 GC6 601 A 1 HETATM 12 C C5 GC6 . . . B 2 -33.585 10.704 -16.79 1 72.69 ? C5 GC6 601 A 1 HETATM 13 C C6 GC6 . . . B 2 -34.288 11.224 -15.711 1 75.45 ? C6 GC6 601 A 1 HETATM 14 C C8 GC6 . . . B 2 -34.519 12.998 -14.125 1 78.82 ? C8 GC6 601 A 1 HETATM 15 C C9 GC6 . . . B 2 -33.672 13.881 -13.41 1 72.04 ? C9 GC6 601 A 1 HETATM 16 C C14 GC6 . . . B 2 -35.758 12.914 -9.803 1 97.19 ? C14 GC6 601 A 1 HETATM 17 C C16 GC6 . . . B 2 -35.91 15.237 -9.035 1 101.25 ? C16 GC6 601 A 1 HETATM 18 C C18 GC6 . . . B 2 -34.705 15.612 -9.929 1 82.43 ? C18 GC6 601 A 1 HETATM 19 C C19 GC6 . . . B 2 -32.336 13.518 -13.803 1 69.33 ? C19 GC6 601 A 1 HETATM 20 C C23 GC6 . . . B 2 -28.806 11.825 -15.524 1 68.05 ? C23 GC6 601 A 1 HETATM 21 C C25 GC6 . . . B 2 -26.729 10.489 -16.67 1 74.35 ? C25 GC6 601 A 1 HETATM 22 C C27 GC6 . . . B 2 -27.019 8.983 -16.438 1 63.04 ? C27 GC6 601 A 1 HETATM 23 C C29 GC6 . . . B 2 -25.838 8.426 -18.63 1 72.1 ? C29 GC6 601 A 1 HETATM 24 C C30 GC6 . . . B 2 -25.512 9.927 -18.819 1 80.51 ? C30 GC6 601 A 1 HETATM 25 C C31 GC6 . . . B 2 -26.575 10.827 -18.154 1 67.61 ? C31 GC6 601 A 1 HETATM 26 C C32 GC6 . . . B 2 -31.268 11.939 -15.257 1 75.13 ? C32 GC6 601 A 1 HETATM 27 C C33 GC6 . . . B 2 -32.438 12.513 -14.682 1 75.03 ? C33 GC6 601 A 1 HETATM 28 N N1 GC6 . . . B 2 -37.416 9.374 -16.033 1 82.97 ? N1 GC6 601 A 1 HETATM 29 N N3 GC6 . . . B 2 -35.383 9.338 -17.326 1 68.91 ? N3 GC6 601 A 1 HETATM 30 N N7 GC6 . . . B 2 -33.776 12.182 -14.892 1 78.98 ? N7 GC6 601 A 1 HETATM 31 N N17 GC6 . . . B 2 -35.822 16.033 -7.826 1 111.05 ? N17 GC6 601 A 1 HETATM 32 N N34 GC6 . . . B 2 -35.528 10.783 -15.499 1 83.54 ? N34 GC6 601 A 1 HETATM 33 O O11 GC6 . . . B 2 -33.997 16.139 -12.7 1 98.71 ? O11 GC6 601 A 1 HETATM 34 O O26 GC6 . . . B 2 -25.557 10.851 -15.996 1 81.23 ? O26 GC6 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #