data_7CPQ # _model_server_result.job_id c419h2MXHacE7goiPGpTOg _model_server_result.datetime_utc '2025-01-10 10:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 7CPQ # _exptl.entry_id 7CPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.816 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6R)-6-[(6-chloranyl-1H-indol-3-yl)methyl]-6,7,8,9-tetrahydrobenzo[7]annulen-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CPQ _cell.length_a 104.877 _cell.length_b 156.616 _cell.length_c 182.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc11 B OE1 GLU 111 B GLU 113 1_555 S CA CA . C CA 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc12 B OE2 GLU 111 B GLU 113 1_555 S CA CA . C CA 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc13 K O2A GDP . B GDP 502 1_555 L MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc14 L MG MG . B MG 503 1_555 AA O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc15 L MG MG . B MG 503 1_555 BA O HOH . C HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc16 O O3G GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc17 O O1B GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc18 R MG MG . C MG 504 1_555 BA O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc19 D OE1 GLN 11 D GLN 11 1_555 W MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc20 V O2A GDP . D GDP 501 1_555 W MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc21 F OE2 GLU 331 F GLU 331 1_555 Y MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc22 Y MG MG . F MG 401 1_555 EA O HOH . F HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'C20 H18 Cl N O' _chem_comp.formula_weight 323.816 _chem_comp.id G9X _chem_comp.mon_nstd_flag . _chem_comp.name (6R)-6-[(6-chloranyl-1H-indol-3-yl)methyl]-6,7,8,9-tetrahydrobenzo[7]annulen-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C20 G9X sing 83 n n C19 C20 G9X doub 84 n y C19 C17 G9X sing 85 n y N16 C17 G9X sing 86 n y N16 C15 G9X sing 87 n y C20 C21 G9X sing 88 n y C17 C18 G9X doub 89 n y C15 C14 G9X doub 90 n y C21 C22 G9X doub 91 n y C18 C14 G9X sing 92 n y C18 C22 G9X sing 93 n y C14 C13 G9X sing 94 n n C13 C10 G9X sing 95 n n C09 C10 G9X sing 96 n n C09 C08 G9X sing 97 n n C10 C11 G9X sing 98 n n C08 C07 G9X sing 99 n n C07 C04 G9X sing 100 n n C11 O12 G9X doub 101 n n C11 C05 G9X sing 102 n n C04 C05 G9X doub 103 n y C04 C03 G9X sing 104 n y C05 C06 G9X sing 105 n y C03 C02 G9X doub 106 n y C06 C01 G9X doub 107 n y C02 C01 G9X sing 108 n y C10 H101 G9X sing 109 n n C13 H132 G9X sing 110 n n C13 H131 G9X sing 111 n n C15 H151 G9X sing 112 n n C21 H211 G9X sing 113 n n C22 H221 G9X sing 114 n n C01 H011 G9X sing 115 n n C02 H021 G9X sing 116 n n C03 H031 G9X sing 117 n n C06 H061 G9X sing 118 n n C07 H071 G9X sing 119 n n C07 H072 G9X sing 120 n n C08 H081 G9X sing 121 n n C08 H082 G9X sing 122 n n C09 H091 G9X sing 123 n n C09 H092 G9X sing 124 n n N16 H161 G9X sing 125 n n C19 H191 G9X sing 126 n n # _atom_sites.entry_id 7CPQ _atom_sites.fract_transf_matrix[1][1] 0.009535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 1 GTP GTP . H 6 MG A 1 502 1 MG MG . I 7 CA A 1 503 1 CA CA . J 8 G9X B 1 501 1 G9X LIG . K 9 GDP B 1 502 1 GDP GDP . L 6 MG B 1 503 3 MG MG . M 7 CA B 1 504 2 CA CA . N 10 MES B 1 505 1 MES MES . O 5 GTP C 1 501 2 GTP GTP . P 11 GOL C 1 502 1 GOL GOL . Q 11 GOL C 1 503 2 GOL GOL . R 6 MG C 1 504 2 MG MG . S 7 CA C 1 505 3 CA CA . T 12 IMD C 1 506 1 IMD IMD . U 12 IMD C 1 507 3 IMD IMD . V 9 GDP D 1 501 2 GDP GDP . W 6 MG D 1 502 4 MG MG . X 12 IMD E 1 201 2 IMD IMD . Y 6 MG F 1 401 5 MG MG . Z 13 HOH A 1 601 17 HOH HOH . Z 13 HOH A 2 602 57 HOH HOH . Z 13 HOH A 3 603 5 HOH HOH . Z 13 HOH A 4 604 32 HOH HOH . Z 13 HOH A 5 605 31 HOH HOH . Z 13 HOH A 6 606 76 HOH HOH . Z 13 HOH A 7 607 46 HOH HOH . Z 13 HOH A 8 608 12 HOH HOH . Z 13 HOH A 9 609 70 HOH HOH . Z 13 HOH A 10 610 81 HOH HOH . Z 13 HOH A 11 611 80 HOH HOH . AA 13 HOH B 1 601 50 HOH HOH . AA 13 HOH B 2 602 86 HOH HOH . AA 13 HOH B 3 603 64 HOH HOH . AA 13 HOH B 4 604 28 HOH HOH . AA 13 HOH B 5 605 6 HOH HOH . AA 13 HOH B 6 606 8 HOH HOH . AA 13 HOH B 7 607 34 HOH HOH . AA 13 HOH B 8 608 45 HOH HOH . AA 13 HOH B 9 609 74 HOH HOH . AA 13 HOH B 10 610 23 HOH HOH . AA 13 HOH B 11 611 53 HOH HOH . AA 13 HOH B 12 612 13 HOH HOH . AA 13 HOH B 13 613 65 HOH HOH . AA 13 HOH B 14 614 69 HOH HOH . AA 13 HOH B 15 615 4 HOH HOH . BA 13 HOH C 1 601 39 HOH HOH . BA 13 HOH C 2 602 9 HOH HOH . BA 13 HOH C 3 603 33 HOH HOH . BA 13 HOH C 4 604 11 HOH HOH . BA 13 HOH C 5 605 71 HOH HOH . BA 13 HOH C 6 606 41 HOH HOH . BA 13 HOH C 7 607 82 HOH HOH . BA 13 HOH C 8 608 44 HOH HOH . BA 13 HOH C 9 609 48 HOH HOH . BA 13 HOH C 10 610 52 HOH HOH . BA 13 HOH C 11 611 60 HOH HOH . BA 13 HOH C 12 612 47 HOH HOH . BA 13 HOH C 13 613 30 HOH HOH . BA 13 HOH C 14 614 58 HOH HOH . BA 13 HOH C 15 615 63 HOH HOH . BA 13 HOH C 16 616 29 HOH HOH . BA 13 HOH C 17 617 15 HOH HOH . BA 13 HOH C 18 618 21 HOH HOH . BA 13 HOH C 19 619 3 HOH HOH . BA 13 HOH C 20 620 51 HOH HOH . BA 13 HOH C 21 621 16 HOH HOH . BA 13 HOH C 22 622 78 HOH HOH . BA 13 HOH C 23 623 61 HOH HOH . BA 13 HOH C 24 624 20 HOH HOH . BA 13 HOH C 25 625 56 HOH HOH . BA 13 HOH C 26 626 7 HOH HOH . BA 13 HOH C 27 627 54 HOH HOH . BA 13 HOH C 28 628 49 HOH HOH . BA 13 HOH C 29 629 55 HOH HOH . BA 13 HOH C 30 630 72 HOH HOH . BA 13 HOH C 31 631 10 HOH HOH . BA 13 HOH C 32 632 62 HOH HOH . BA 13 HOH C 33 633 25 HOH HOH . BA 13 HOH C 34 634 37 HOH HOH . BA 13 HOH C 35 635 26 HOH HOH . BA 13 HOH C 36 636 27 HOH HOH . BA 13 HOH C 37 637 2 HOH HOH . CA 13 HOH D 1 601 24 HOH HOH . CA 13 HOH D 2 602 68 HOH HOH . DA 13 HOH E 1 301 75 HOH HOH . EA 13 HOH F 1 501 42 HOH HOH . EA 13 HOH F 2 502 84 HOH HOH . EA 13 HOH F 3 503 35 HOH HOH . EA 13 HOH F 4 504 43 HOH HOH . EA 13 HOH F 5 505 36 HOH HOH . EA 13 HOH F 6 506 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G9X . . . J 8 -17.53 66.842 -41.42 1 28.98 ? C10 G9X 501 B 1 HETATM 2 C C13 G9X . . . J 8 -18.811 66.8 -42.247 1 32.45 ? C13 G9X 501 B 1 HETATM 3 C C15 G9X . . . J 8 -18.872 67.362 -44.738 1 45.04 ? C15 G9X 501 B 1 HETATM 4 C C17 G9X . . . J 8 -17.99 65.518 -45.611 1 39.57 ? C17 G9X 501 B 1 HETATM 5 C C20 G9X . . . J 8 -16.901 63.111 -45.886 1 35.95 ? C20 G9X 501 B 1 HETATM 6 C C21 G9X . . . J 8 -16.92 62.951 -44.42 1 33.78 ? C21 G9X 501 B 1 HETATM 7 C C22 G9X . . . J 8 -17.475 64.054 -43.562 1 39.11 ? C22 G9X 501 B 1 HETATM 8 C C01 G9X . . . J 8 -16.959 66.155 -36.344 1 28.72 ? C01 G9X 501 B 1 HETATM 9 C C02 G9X . . . J 8 -15.465 65.866 -36.537 1 30.31 ? C02 G9X 501 B 1 HETATM 10 C C03 G9X . . . J 8 -14.781 66.075 -37.883 1 36.22 ? C03 G9X 501 B 1 HETATM 11 C C04 G9X . . . J 8 -15.609 66.589 -39.056 1 40.49 ? C04 G9X 501 B 1 HETATM 12 C C05 G9X . . . J 8 -17.07 66.877 -38.871 1 39.76 ? C05 G9X 501 B 1 HETATM 13 C C06 G9X . . . J 8 -17.774 66.671 -37.523 1 29.77 ? C06 G9X 501 B 1 HETATM 14 C C07 G9X . . . J 8 -14.887 66.802 -40.4 1 42.56 ? C07 G9X 501 B 1 HETATM 15 C C08 G9X . . . J 8 -15.352 68.047 -41.149 1 35.15 ? C08 G9X 501 B 1 HETATM 16 C C09 G9X . . . J 8 -16.488 67.716 -42.1 1 29.26 ? C09 G9X 501 B 1 HETATM 17 C C11 G9X . . . J 8 -17.89 67.393 -40.038 1 35.57 ? C11 G9X 501 B 1 HETATM 18 O O12 G9X . . . J 8 -18.747 68.189 -39.834 1 32.69 ? O12 G9X 501 B 1 HETATM 19 C C14 G9X . . . J 8 -18.554 66.504 -43.705 1 37.45 ? C14 G9X 501 B 1 HETATM 20 N N16 G9X . . . J 8 -18.524 66.745 -45.909 1 46.19 ? N16 G9X 501 B 1 HETATM 21 C C18 G9X . . . J 8 -18.021 65.372 -44.231 1 38.9 ? C18 G9X 501 B 1 HETATM 22 C C19 G9X . . . J 8 -17.419 64.366 -46.519 1 34.41 ? C19 G9X 501 B 1 HETATM 23 CL CL2 G9X . . . J 8 -16.268 61.797 -46.879 1 43.77 ? CL2 G9X 501 B 1 HETATM 24 H H101 G9X . . . J 8 -17.177 65.943 -41.322 1 34.78 ? H101 G9X 501 B 1 HETATM 25 H H132 G9X . . . J 8 -19.394 66.114 -41.886 1 38.94 ? H132 G9X 501 B 1 HETATM 26 H H131 G9X . . . J 8 -19.256 67.659 -42.176 1 38.94 ? H131 G9X 501 B 1 HETATM 27 H H151 G9X . . . J 8 -19.256 68.205 -44.654 1 54.05 ? H151 G9X 501 B 1 HETATM 28 H H211 G9X . . . J 8 -16.608 62.166 -44.031 1 40.54 ? H211 G9X 501 B 1 HETATM 29 H H221 G9X . . . J 8 -17.499 63.957 -42.637 1 46.93 ? H221 G9X 501 B 1 HETATM 30 H H011 G9X . . . J 8 -17.362 66.019 -35.517 1 34.47 ? H011 G9X 501 B 1 HETATM 31 H H021 G9X . . . J 8 -14.967 65.549 -35.819 1 36.37 ? H021 G9X 501 B 1 HETATM 32 H H031 G9X . . . J 8 -13.874 65.897 -37.986 1 43.47 ? H031 G9X 501 B 1 HETATM 33 H H061 G9X . . . J 8 -18.681 66.853 -37.429 1 35.73 ? H061 G9X 501 B 1 HETATM 34 H H071 G9X . . . J 8 -13.936 66.881 -40.231 1 51.07 ? H071 G9X 501 B 1 HETATM 35 H H072 G9X . . . J 8 -15.045 66.027 -40.962 1 51.07 ? H072 G9X 501 B 1 HETATM 36 H H081 G9X . . . J 8 -15.658 68.708 -40.507 1 42.18 ? H081 G9X 501 B 1 HETATM 37 H H082 G9X . . . J 8 -14.609 68.409 -41.656 1 42.18 ? H082 G9X 501 B 1 HETATM 38 H H091 G9X . . . J 8 -16.907 68.54 -42.393 1 35.11 ? H091 G9X 501 B 1 HETATM 39 H H092 G9X . . . J 8 -16.131 67.244 -42.869 1 35.11 ? H092 G9X 501 B 1 HETATM 40 H H161 G9X . . . J 8 -18.615 67.075 -46.698 1 55.43 ? H161 G9X 501 B 1 HETATM 41 H H191 G9X . . . J 8 -17.402 64.464 -47.444 1 41.29 ? H191 G9X 501 B 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 41 #