data_7CPQ # _model_server_result.job_id -V4ZWeSzzKj3eEkjdCRWhA _model_server_result.datetime_utc '2025-01-25 10:08:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 7CPQ # _exptl.entry_id 7CPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CPQ _cell.length_a 104.877 _cell.length_b 156.616 _cell.length_c 182.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc11 B OE1 GLU 111 B GLU 113 1_555 S CA CA . C CA 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc12 B OE2 GLU 111 B GLU 113 1_555 S CA CA . C CA 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc13 K O2A GDP . B GDP 502 1_555 L MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc14 L MG MG . B MG 503 1_555 AA O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc15 L MG MG . B MG 503 1_555 BA O HOH . C HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc16 O O3G GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc17 O O1B GTP . C GTP 501 1_555 R MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc18 R MG MG . C MG 504 1_555 BA O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc19 D OE1 GLN 11 D GLN 11 1_555 W MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc20 V O2A GDP . D GDP 501 1_555 W MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc21 F OE2 GLU 331 F GLU 331 1_555 Y MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc22 Y MG MG . F MG 401 1_555 EA O HOH . F HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 231 n n PG O2G GTP sing 232 n n PG O3G GTP sing 233 n n PG O3B GTP sing 234 n n O2G HOG2 GTP sing 235 n n O3G HOG3 GTP sing 236 n n O3B PB GTP sing 237 n n PB O1B GTP doub 238 n n PB O2B GTP sing 239 n n PB O3A GTP sing 240 n n O2B HOB2 GTP sing 241 n n O3A PA GTP sing 242 n n PA O1A GTP doub 243 n n PA O2A GTP sing 244 n n PA O5' GTP sing 245 n n O2A HOA2 GTP sing 246 n n O5' C5' GTP sing 247 n n C5' C4' GTP sing 248 n n C5' H5' GTP sing 249 n n C5' "H5''" GTP sing 250 n n C4' O4' GTP sing 251 n n C4' C3' GTP sing 252 n n C4' H4' GTP sing 253 n n O4' C1' GTP sing 254 n n C3' O3' GTP sing 255 n n C3' C2' GTP sing 256 n n C3' H3' GTP sing 257 n n O3' HO3' GTP sing 258 n n C2' O2' GTP sing 259 n n C2' C1' GTP sing 260 n n C2' H2' GTP sing 261 n n O2' HO2' GTP sing 262 n n C1' N9 GTP sing 263 n n C1' H1' GTP sing 264 n n N9 C8 GTP sing 265 n y N9 C4 GTP sing 266 n y C8 N7 GTP doub 267 n y C8 H8 GTP sing 268 n n N7 C5 GTP sing 269 n y C5 C6 GTP sing 270 n n C5 C4 GTP doub 271 n y C6 O6 GTP doub 272 n n C6 N1 GTP sing 273 n n N1 C2 GTP sing 274 n n N1 HN1 GTP sing 275 n n C2 N2 GTP sing 276 n n C2 N3 GTP doub 277 n n N2 HN21 GTP sing 278 n n N2 HN22 GTP sing 279 n n N3 C4 GTP sing 280 n n # _atom_sites.entry_id 7CPQ _atom_sites.fract_transf_matrix[1][1] 0.009535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 1 GTP GTP . H 6 MG A 1 502 1 MG MG . I 7 CA A 1 503 1 CA CA . J 8 G9X B 1 501 1 G9X LIG . K 9 GDP B 1 502 1 GDP GDP . L 6 MG B 1 503 3 MG MG . M 7 CA B 1 504 2 CA CA . N 10 MES B 1 505 1 MES MES . O 5 GTP C 1 501 2 GTP GTP . P 11 GOL C 1 502 1 GOL GOL . Q 11 GOL C 1 503 2 GOL GOL . R 6 MG C 1 504 2 MG MG . S 7 CA C 1 505 3 CA CA . T 12 IMD C 1 506 1 IMD IMD . U 12 IMD C 1 507 3 IMD IMD . V 9 GDP D 1 501 2 GDP GDP . W 6 MG D 1 502 4 MG MG . X 12 IMD E 1 201 2 IMD IMD . Y 6 MG F 1 401 5 MG MG . Z 13 HOH A 1 601 17 HOH HOH . Z 13 HOH A 2 602 57 HOH HOH . Z 13 HOH A 3 603 5 HOH HOH . Z 13 HOH A 4 604 32 HOH HOH . Z 13 HOH A 5 605 31 HOH HOH . Z 13 HOH A 6 606 76 HOH HOH . Z 13 HOH A 7 607 46 HOH HOH . Z 13 HOH A 8 608 12 HOH HOH . Z 13 HOH A 9 609 70 HOH HOH . Z 13 HOH A 10 610 81 HOH HOH . Z 13 HOH A 11 611 80 HOH HOH . AA 13 HOH B 1 601 50 HOH HOH . AA 13 HOH B 2 602 86 HOH HOH . AA 13 HOH B 3 603 64 HOH HOH . AA 13 HOH B 4 604 28 HOH HOH . AA 13 HOH B 5 605 6 HOH HOH . AA 13 HOH B 6 606 8 HOH HOH . AA 13 HOH B 7 607 34 HOH HOH . AA 13 HOH B 8 608 45 HOH HOH . AA 13 HOH B 9 609 74 HOH HOH . AA 13 HOH B 10 610 23 HOH HOH . AA 13 HOH B 11 611 53 HOH HOH . AA 13 HOH B 12 612 13 HOH HOH . AA 13 HOH B 13 613 65 HOH HOH . AA 13 HOH B 14 614 69 HOH HOH . AA 13 HOH B 15 615 4 HOH HOH . BA 13 HOH C 1 601 39 HOH HOH . BA 13 HOH C 2 602 9 HOH HOH . BA 13 HOH C 3 603 33 HOH HOH . BA 13 HOH C 4 604 11 HOH HOH . BA 13 HOH C 5 605 71 HOH HOH . BA 13 HOH C 6 606 41 HOH HOH . BA 13 HOH C 7 607 82 HOH HOH . BA 13 HOH C 8 608 44 HOH HOH . BA 13 HOH C 9 609 48 HOH HOH . BA 13 HOH C 10 610 52 HOH HOH . BA 13 HOH C 11 611 60 HOH HOH . BA 13 HOH C 12 612 47 HOH HOH . BA 13 HOH C 13 613 30 HOH HOH . BA 13 HOH C 14 614 58 HOH HOH . BA 13 HOH C 15 615 63 HOH HOH . BA 13 HOH C 16 616 29 HOH HOH . BA 13 HOH C 17 617 15 HOH HOH . BA 13 HOH C 18 618 21 HOH HOH . BA 13 HOH C 19 619 3 HOH HOH . BA 13 HOH C 20 620 51 HOH HOH . BA 13 HOH C 21 621 16 HOH HOH . BA 13 HOH C 22 622 78 HOH HOH . BA 13 HOH C 23 623 61 HOH HOH . BA 13 HOH C 24 624 20 HOH HOH . BA 13 HOH C 25 625 56 HOH HOH . BA 13 HOH C 26 626 7 HOH HOH . BA 13 HOH C 27 627 54 HOH HOH . BA 13 HOH C 28 628 49 HOH HOH . BA 13 HOH C 29 629 55 HOH HOH . BA 13 HOH C 30 630 72 HOH HOH . BA 13 HOH C 31 631 10 HOH HOH . BA 13 HOH C 32 632 62 HOH HOH . BA 13 HOH C 33 633 25 HOH HOH . BA 13 HOH C 34 634 37 HOH HOH . BA 13 HOH C 35 635 26 HOH HOH . BA 13 HOH C 36 636 27 HOH HOH . BA 13 HOH C 37 637 2 HOH HOH . CA 13 HOH D 1 601 24 HOH HOH . CA 13 HOH D 2 602 68 HOH HOH . DA 13 HOH E 1 301 75 HOH HOH . EA 13 HOH F 1 501 42 HOH HOH . EA 13 HOH F 2 502 84 HOH HOH . EA 13 HOH F 3 503 35 HOH HOH . EA 13 HOH F 4 504 43 HOH HOH . EA 13 HOH F 5 505 36 HOH HOH . EA 13 HOH F 6 506 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . O 5 -20.057 18.09 16.777 1 32.26 ? PG GTP 501 C 1 HETATM 2 O O1G GTP . . . O 5 -21.142 18.881 17.213 1 32.48 ? O1G GTP 501 C 1 HETATM 3 O O2G GTP . . . O 5 -20.435 16.883 16.18 1 32.34 -1 O2G GTP 501 C 1 HETATM 4 O O3G GTP . . . O 5 -19 18.077 17.723 1 32.54 -1 O3G GTP 501 C 1 HETATM 5 O O3B GTP . . . O 5 -19.513 18.886 15.533 1 31.69 ? O3B GTP 501 C 1 HETATM 6 P PB GTP . . . O 5 -18.456 20.046 15.288 1 31.5 ? PB GTP 501 C 1 HETATM 7 O O1B GTP . . . O 5 -18.043 20.61 16.532 1 31.91 ? O1B GTP 501 C 1 HETATM 8 O O2B GTP . . . O 5 -18.945 20.831 14.242 1 31.07 -1 O2B GTP 501 C 1 HETATM 9 O O3A GTP . . . O 5 -17.211 19.269 14.746 1 31.5 ? O3A GTP 501 C 1 HETATM 10 P PA GTP . . . O 5 -15.734 19.616 14.353 1 31.37 ? PA GTP 501 C 1 HETATM 11 O O1A GTP . . . O 5 -14.804 19.369 15.393 1 31.87 ? O1A GTP 501 C 1 HETATM 12 O O2A GTP . . . O 5 -15.686 20.857 13.665 1 31.06 -1 O2A GTP 501 C 1 HETATM 13 O O5' GTP . . . O 5 -15.655 18.533 13.267 1 31.18 ? O5' GTP 501 C 1 HETATM 14 C C5' GTP . . . O 5 -14.63 17.619 13.014 1 31.48 ? C5' GTP 501 C 1 HETATM 15 C C4' GTP . . . O 5 -13.808 17.9 11.777 1 31.19 ? C4' GTP 501 C 1 HETATM 16 O O4' GTP . . . O 5 -13.208 19.165 11.789 1 30.98 ? O4' GTP 501 C 1 HETATM 17 C C3' GTP . . . O 5 -12.652 16.981 11.697 1 31.53 ? C3' GTP 501 C 1 HETATM 18 O O3' GTP . . . O 5 -12.345 16.729 10.364 1 31.36 ? O3' GTP 501 C 1 HETATM 19 C C2' GTP . . . O 5 -11.535 17.736 12.297 1 31.77 ? C2' GTP 501 C 1 HETATM 20 O O2' GTP . . . O 5 -10.342 17.274 11.764 1 32.1 ? O2' GTP 501 C 1 HETATM 21 C C1' GTP . . . O 5 -11.833 19.123 11.891 1 31.39 ? C1' GTP 501 C 1 HETATM 22 N N9 GTP . . . O 5 -11.483 20.132 12.852 1 31.61 ? N9 GTP 501 C 1 HETATM 23 C C8 GTP . . . O 5 -11.926 20.242 14.067 1 31.89 ? C8 GTP 501 C 1 HETATM 24 N N7 GTP . . . O 5 -11.416 21.299 14.64 1 32.08 ? N7 GTP 501 C 1 HETATM 25 C C5 GTP . . . O 5 -10.615 21.872 13.786 1 31.91 ? C5 GTP 501 C 1 HETATM 26 C C6 GTP . . . O 5 -9.763 23.035 13.737 1 32.07 ? C6 GTP 501 C 1 HETATM 27 O O6 GTP . . . O 5 -9.66 23.756 14.679 1 32.42 ? O6 GTP 501 C 1 HETATM 28 N N1 GTP . . . O 5 -9.098 23.292 12.646 1 31.85 ? N1 GTP 501 C 1 HETATM 29 C C2 GTP . . . O 5 -9.205 22.526 11.595 1 31.5 ? C2 GTP 501 C 1 HETATM 30 N N2 GTP . . . O 5 -8.508 22.847 10.539 1 31.34 ? N2 GTP 501 C 1 HETATM 31 N N3 GTP . . . O 5 -9.955 21.455 11.557 1 31.39 ? N3 GTP 501 C 1 HETATM 32 C C4 GTP . . . O 5 -10.671 21.095 12.596 1 31.6 ? C4 GTP 501 C 1 HETATM 33 H H5' GTP . . . O 5 -15.076 16.64 12.897 1 37.77 ? H5' GTP 501 C 1 HETATM 34 H "H5''" GTP . . . O 5 -13.977 17.583 13.879 1 37.77 ? "H5''" GTP 501 C 1 HETATM 35 H H4' GTP . . . O 5 -14.416 17.768 10.883 1 37.43 ? H4' GTP 501 C 1 HETATM 36 H H3' GTP . . . O 5 -12.846 16.058 12.248 1 37.84 ? H3' GTP 501 C 1 HETATM 37 H HO3' GTP . . . O 5 -11.638 16.079 10.315 1 37.63 ? HO3' GTP 501 C 1 HETATM 38 H H2' GTP . . . O 5 -11.545 17.646 13.384 1 38.13 ? H2' GTP 501 C 1 HETATM 39 H HO2' GTP . . . O 5 -9.727 17.113 12.488 1 38.52 ? HO2' GTP 501 C 1 HETATM 40 H H1' GTP . . . O 5 -11.363 19.336 10.932 1 37.66 ? H1' GTP 501 C 1 HETATM 41 H H8 GTP . . . O 5 -12.622 19.569 14.531 1 38.27 ? H8 GTP 501 C 1 HETATM 42 H HN1 GTP . . . O 5 -8.477 24.123 12.607 1 38.22 ? HN1 GTP 501 C 1 HETATM 43 H HN21 GTP . . . O 5 -7.931 23.665 10.577 1 37.61 ? HN21 GTP 501 C 1 HETATM 44 H HN22 GTP . . . O 5 -8.551 22.289 9.706 1 37.61 ? HN22 GTP 501 C 1 # _model_server_stats.io_time_ms 144 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #