data_7CPY
#
_model_server_result.job_id            veR-no2O6GgBl4kBSxraJw 
_model_server_result.datetime_utc      '2024-10-11 03:17:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cpy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3500}' 
#
_entry.id    7CPY 
#
_exptl.entry_id    7CPY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     7CPY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAP A 1 3500 3500 NAP NAP . 
F 3 NAP B 1 3500 3500 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 3 160.376 155.438 228.684 0 84.69 ? PA NAP 3500 A 1 
HETATM 2 O O1A NAP . . . E 3 160.924 155.18 227.354 0 84.69 ? O1A NAP 3500 A 1 
HETATM 3 O O2A NAP . . . E 3 159.565 154.241 228.898 0 84.69 ? O2A NAP 3500 A 1 
HETATM 4 O O5B NAP . . . E 3 161.574 155.573 229.809 0 84.69 ? O5B NAP 3500 A 1 
HETATM 5 C C5B NAP . . . E 3 161.215 155.682 231.155 0 84.69 ? C5B NAP 3500 A 1 
HETATM 6 C C4B NAP . . . E 3 162.156 154.885 231.978 0 84.69 ? C4B NAP 3500 A 1 
HETATM 7 O O4B NAP . . . E 3 162.476 155.558 233.312 0 84.69 ? O4B NAP 3500 A 1 
HETATM 8 C C3B NAP . . . E 3 161.597 153.558 232.321 0 84.69 ? C3B NAP 3500 A 1 
HETATM 9 O O3B NAP . . . E 3 162.054 152.554 231.353 0 84.69 ? O3B NAP 3500 A 1 
HETATM 10 C C2B NAP . . . E 3 162.075 153.238 233.653 0 84.69 ? C2B NAP 3500 A 1 
HETATM 11 O O2B NAP . . . E 3 162.693 151.905 233.702 0 84.69 ? O2B NAP 3500 A 1 
HETATM 12 C C1B NAP . . . E 3 163.048 154.307 233.977 0 84.69 ? C1B NAP 3500 A 1 
HETATM 13 N N9A NAP . . . E 3 163.34 154.507 235.352 0 84.69 ? N9A NAP 3500 A 1 
HETATM 14 C C8A NAP . . . E 3 164.462 155.101 235.6 0 84.69 ? C8A NAP 3500 A 1 
HETATM 15 N N7A NAP . . . E 3 164.662 155.246 236.972 0 84.69 ? N7A NAP 3500 A 1 
HETATM 16 C C5A NAP . . . E 3 163.373 154.577 237.418 0 84.69 ? C5A NAP 3500 A 1 
HETATM 17 C C6A NAP . . . E 3 162.871 154.347 238.677 0 84.69 ? C6A NAP 3500 A 1 
HETATM 18 N N6A NAP . . . E 3 163.64 154.784 239.827 0 84.69 ? N6A NAP 3500 A 1 
HETATM 19 N N1A NAP . . . E 3 161.705 153.738 238.876 0 84.69 ? N1A NAP 3500 A 1 
HETATM 20 C C2A NAP . . . E 3 161.06 153.366 237.759 0 84.69 ? C2A NAP 3500 A 1 
HETATM 21 N N3A NAP . . . E 3 161.462 153.544 236.498 0 84.69 ? N3A NAP 3500 A 1 
HETATM 22 C C4A NAP . . . E 3 162.615 154.147 236.332 0 84.69 ? C4A NAP 3500 A 1 
HETATM 23 O O3 NAP . . . E 3 159.46 156.805 228.696 0 84.69 ? O3 NAP 3500 A 1 
HETATM 24 P PN NAP . . . E 3 160.092 158.29 228.377 0 84.69 ? PN NAP 3500 A 1 
HETATM 25 O O1N NAP . . . E 3 159.857 158.671 226.987 0 84.69 ? O1N NAP 3500 A 1 
HETATM 26 O O2N NAP . . . E 3 161.553 158.254 228.422 0 84.69 ? O2N NAP 3500 A 1 
HETATM 27 O O5D NAP . . . E 3 159.484 159.406 229.428 0 84.69 ? O5D NAP 3500 A 1 
HETATM 28 C C5D NAP . . . E 3 160.336 160.373 229.968 0 84.69 ? C5D NAP 3500 A 1 
HETATM 29 C C4D NAP . . . E 3 159.505 161.478 230.546 0 84.69 ? C4D NAP 3500 A 1 
HETATM 30 O O4D NAP . . . E 3 158.742 162.1 229.484 0 84.69 ? O4D NAP 3500 A 1 
HETATM 31 C C3D NAP . . . E 3 158.532 160.914 231.538 0 84.69 ? C3D NAP 3500 A 1 
HETATM 32 O O3D NAP . . . E 3 158.572 161.661 232.753 0 84.69 ? O3D NAP 3500 A 1 
HETATM 33 C C2D NAP . . . E 3 157.191 161.031 230.932 0 84.69 ? C2D NAP 3500 A 1 
HETATM 34 O O2D NAP . . . E 3 156.27 161.577 231.88 0 84.69 ? O2D NAP 3500 A 1 
HETATM 35 C C1D NAP . . . E 3 157.323 161.951 229.756 0 84.69 ? C1D NAP 3500 A 1 
HETATM 36 N N1N NAP . . . E 3 156.641 161.383 228.643 0 84.69 ? N1N NAP 3500 A 1 
HETATM 37 C C2N NAP . . . E 3 155.229 161.493 228.526 0 84.69 ? C2N NAP 3500 A 1 
HETATM 38 C C3N NAP . . . E 3 154.54 160.942 227.454 0 84.69 ? C3N NAP 3500 A 1 
HETATM 39 C C7N NAP . . . E 3 153.027 161.085 227.365 0 84.69 ? C7N NAP 3500 A 1 
HETATM 40 O O7N NAP . . . E 3 152.525 162.151 227.468 0 84.69 ? O7N NAP 3500 A 1 
HETATM 41 N N7N NAP . . . E 3 152.203 159.912 227.149 0 84.69 ? N7N NAP 3500 A 1 
HETATM 42 C C4N NAP . . . E 3 155.248 160.249 226.441 0 84.69 ? C4N NAP 3500 A 1 
HETATM 43 C C5N NAP . . . E 3 156.648 160.127 226.541 0 84.69 ? C5N NAP 3500 A 1 
HETATM 44 C C6N NAP . . . E 3 157.316 160.678 227.611 0 84.69 ? C6N NAP 3500 A 1 
HETATM 45 P P2B NAP . . . E 3 164.23 151.667 233.149 0 84.69 ? P2B NAP 3500 A 1 
HETATM 46 O O1X NAP . . . E 3 165.269 152.265 233.986 0 84.69 ? O1X NAP 3500 A 1 
HETATM 47 O O2X NAP . . . E 3 164.622 150.266 233.033 0 84.69 ? O2X NAP 3500 A 1 
HETATM 48 O O3X NAP . . . E 3 164.468 152.223 231.821 0 84.69 ? O3X NAP 3500 A 1 
HETATM 49 H H51A NAP . . . E 3 161.269 156.724 231.449 0 84.69 ? H51A NAP 3500 A 1 
HETATM 50 H H52A NAP . . . E 3 160.199 155.319 231.285 0 84.69 ? H52A NAP 3500 A 1 
HETATM 51 H H4B NAP . . . E 3 163.081 154.749 231.435 0 84.69 ? H4B NAP 3500 A 1 
HETATM 52 H H3B NAP . . . E 3 160.516 153.605 232.328 0 84.69 ? H3B NAP 3500 A 1 
HETATM 53 H HO3A NAP . . . E 3 162.963 152.709 231.154 0 84.69 ? HO3A NAP 3500 A 1 
HETATM 54 H H2B NAP . . . E 3 161.232 153.277 234.328 0 84.69 ? H2B NAP 3500 A 1 
HETATM 55 H H1B NAP . . . E 3 163.979 154.089 233.473 0 84.69 ? H1B NAP 3500 A 1 
HETATM 56 H H8A NAP . . . E 3 165.148 155.443 234.836 0 84.69 ? H8A NAP 3500 A 1 
HETATM 57 H H61A NAP . . . E 3 164.429 155.388 239.699 0 84.69 ? H61A NAP 3500 A 1 
HETATM 58 H H62A NAP . . . E 3 163.381 154.486 240.748 0 84.69 ? H62A NAP 3500 A 1 
HETATM 59 H H2A NAP . . . E 3 160.11 152.867 237.903 0 84.69 ? H2A NAP 3500 A 1 
HETATM 60 H H51N NAP . . . E 3 160.978 160.774 229.193 0 84.69 ? H51N NAP 3500 A 1 
HETATM 61 H H52N NAP . . . E 3 160.943 159.928 230.749 0 84.69 ? H52N NAP 3500 A 1 
HETATM 62 H H4D NAP . . . E 3 160.134 162.215 231.029 0 84.69 ? H4D NAP 3500 A 1 
HETATM 63 H H3D NAP . . . E 3 158.764 159.873 231.729 0 84.69 ? H3D NAP 3500 A 1 
HETATM 64 H HO3N NAP . . . E 3 158.597 161.069 233.489 0 84.69 ? HO3N NAP 3500 A 1 
HETATM 65 H H2D NAP . . . E 3 156.815 160.055 230.624 0 84.69 ? H2D NAP 3500 A 1 
HETATM 66 H HO2N NAP . . . E 3 156.127 162.507 231.689 0 84.69 ? HO2N NAP 3500 A 1 
HETATM 67 H H1D NAP . . . E 3 156.9 162.918 230 0 84.69 ? H1D NAP 3500 A 1 
HETATM 68 H H2N NAP . . . E 3 154.678 162.021 229.294 0 84.69 ? H2N NAP 3500 A 1 
HETATM 69 H H71N NAP . . . E 3 151.209 160.003 227.089 0 84.69 ? H71N NAP 3500 A 1 
HETATM 70 H H72N NAP . . . E 3 152.63 159.008 227.061 0 84.69 ? H72N NAP 3500 A 1 
HETATM 71 H H4N NAP . . . E 3 154.719 159.817 225.601 0 84.69 ? H4N NAP 3500 A 1 
HETATM 72 H H5N NAP . . . E 3 157.2 159.599 225.774 0 84.69 ? H5N NAP 3500 A 1 
HETATM 73 H H6N NAP . . . E 3 158.393 160.57 227.663 0 84.69 ? H6N NAP 3500 A 1 
#
_model_server_stats.io_time_ms              190 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           73 
#