data_7CPY
#
_model_server_result.job_id            B8qY4ygR_FW2r2VQHLHaQQ 
_model_server_result.datetime_utc      '2024-10-11 03:24:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cpy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3500}' 
#
_entry.id    7CPY 
#
_exptl.entry_id    7CPY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     7CPY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAP A 1 3500 3500 NAP NAP . 
F 3 NAP B 1 3500 3500 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 3 221.482 210.997 167.264 0 86.57 ? PA NAP 3500 B 1 
HETATM 2 O O1A NAP . . . F 3 220.039 210.777 167.335 0 86.57 ? O1A NAP 3500 B 1 
HETATM 3 O O2A NAP . . . F 3 221.581 211.875 166.1 0 86.57 ? O2A NAP 3500 B 1 
HETATM 4 O O5B NAP . . . F 3 222.043 211.729 168.63 0 86.57 ? O5B NAP 3500 B 1 
HETATM 5 C C5B NAP . . . F 3 223.379 212.137 168.666 0 86.57 ? C5B NAP 3500 B 1 
HETATM 6 C C4B NAP . . . F 3 223.471 213.449 169.349 0 86.57 ? C4B NAP 3500 B 1 
HETATM 7 O O4B NAP . . . F 3 224.724 213.568 170.216 0 86.57 ? O4B NAP 3500 B 1 
HETATM 8 C C3B NAP . . . F 3 223.544 214.568 168.383 0 86.57 ? C3B NAP 3500 B 1 
HETATM 9 O O3B NAP . . . F 3 222.204 215.116 168.145 0 86.57 ? O3B NAP 3500 B 1 
HETATM 10 C C2B NAP . . . F 3 224.409 215.571 168.973 0 86.57 ? C2B NAP 3500 B 1 
HETATM 11 O O2B NAP . . . F 3 223.779 216.9 168.972 0 86.57 ? O2B NAP 3500 B 1 
HETATM 12 C C1B NAP . . . F 3 224.671 215.089 170.349 0 86.57 ? C1B NAP 3500 B 1 
HETATM 13 N N9A NAP . . . F 3 225.815 215.619 171.002 0 86.57 ? N9A NAP 3500 B 1 
HETATM 14 C C8A NAP . . . F 3 225.797 215.547 172.294 0 86.57 ? C8A NAP 3500 B 1 
HETATM 15 N N7A NAP . . . F 3 226.956 216.096 172.843 0 86.57 ? N7A NAP 3500 B 1 
HETATM 16 C C5A NAP . . . F 3 227.611 216.494 171.532 0 86.57 ? C5A NAP 3500 B 1 
HETATM 17 C C6A NAP . . . F 3 228.815 217.11 171.281 0 86.57 ? C6A NAP 3500 B 1 
HETATM 18 N N6A NAP . . . F 3 229.661 217.474 172.402 0 86.57 ? N6A NAP 3500 B 1 
HETATM 19 N N1A NAP . . . F 3 229.229 217.381 170.047 0 86.57 ? N1A NAP 3500 B 1 
HETATM 20 C C2A NAP . . . F 3 228.387 217.012 169.069 0 86.57 ? C2A NAP 3500 B 1 
HETATM 21 N N3A NAP . . . F 3 227.203 216.411 169.21 0 86.57 ? N3A NAP 3500 B 1 
HETATM 22 C C4A NAP . . . F 3 226.819 216.156 170.438 0 86.57 ? C4A NAP 3500 B 1 
HETATM 23 O O3 NAP . . . F 3 222.289 209.582 167.031 0 86.57 ? O3 NAP 3500 B 1 
HETATM 24 P PN NAP . . . F 3 222.262 208.362 168.134 0 86.57 ? PN NAP 3500 B 1 
HETATM 25 O O1N NAP . . . F 3 221.274 207.349 167.77 0 86.57 ? O1N NAP 3500 B 1 
HETATM 26 O O2N NAP . . . F 3 221.734 208.83 169.415 0 86.57 ? O2N NAP 3500 B 1 
HETATM 27 O O5D NAP . . . F 3 223.768 207.714 168.305 0 86.57 ? O5D NAP 3500 B 1 
HETATM 28 C C5D NAP . . . F 3 224.229 207.38 169.581 0 86.57 ? C5D NAP 3500 B 1 
HETATM 29 C C4D NAP . . . F 3 225.408 206.465 169.443 0 86.57 ? C4D NAP 3500 B 1 
HETATM 30 O O4D NAP . . . F 3 224.984 205.244 168.789 0 86.57 ? O4D NAP 3500 B 1 
HETATM 31 C C3D NAP . . . F 3 226.45 207.109 168.578 0 86.57 ? C3D NAP 3500 B 1 
HETATM 32 O O3D NAP . . . F 3 227.73 207.031 169.202 0 86.57 ? O3D NAP 3500 B 1 
HETATM 33 C C2D NAP . . . F 3 226.474 206.354 167.309 0 86.57 ? C2D NAP 3500 B 1 
HETATM 34 O O2D NAP . . . F 3 227.823 206.053 166.943 0 86.57 ? O2D NAP 3500 B 1 
HETATM 35 C C1D NAP . . . F 3 225.71 205.086 167.541 0 86.57 ? C1D NAP 3500 B 1 
HETATM 36 N N1N NAP . . . F 3 224.819 204.874 166.449 0 86.57 ? N1N NAP 3500 B 1 
HETATM 37 C C2N NAP . . . F 3 225.291 204.325 165.227 0 86.57 ? C2N NAP 3500 B 1 
HETATM 38 C C3N NAP . . . F 3 224.445 204.115 164.147 0 86.57 ? C3N NAP 3500 B 1 
HETATM 39 C C7N NAP . . . F 3 224.989 203.521 162.855 0 86.57 ? C7N NAP 3500 B 1 
HETATM 40 O O7N NAP . . . F 3 225.62 202.52 162.882 0 86.57 ? O7N NAP 3500 B 1 
HETATM 41 N N7N NAP . . . F 3 224.73 204.183 161.592 0 86.57 ? N7N NAP 3500 B 1 
HETATM 42 C C4N NAP . . . F 3 223.072 204.451 164.249 0 86.57 ? C4N NAP 3500 B 1 
HETATM 43 C C5N NAP . . . F 3 222.587 204.999 165.453 0 86.57 ? C5N NAP 3500 B 1 
HETATM 44 C C6N NAP . . . F 3 223.44 205.202 166.515 0 86.57 ? C6N NAP 3500 B 1 
HETATM 45 P P2B NAP . . . F 3 222.638 217.293 170.098 0 86.57 ? P2B NAP 3500 B 1 
HETATM 46 O O1X NAP . . . F 3 223.163 217.458 171.452 0 86.57 ? O1X NAP 3500 B 1 
HETATM 47 O O2X NAP . . . F 3 221.928 218.54 169.832 0 86.57 ? O2X NAP 3500 B 1 
HETATM 48 O O3X NAP . . . F 3 221.582 216.295 170.237 0 86.57 ? O3X NAP 3500 B 1 
HETATM 49 H H51A NAP . . . F 3 223.971 211.396 169.196 0 86.57 ? H51A NAP 3500 B 1 
HETATM 50 H H52A NAP . . . F 3 223.736 212.229 167.648 0 86.57 ? H52A NAP 3500 B 1 
HETATM 51 H H4B NAP . . . F 3 222.605 213.586 169.984 0 86.57 ? H4B NAP 3500 B 1 
HETATM 52 H H3B NAP . . . F 3 223.978 214.224 167.452 0 86.57 ? H3B NAP 3500 B 1 
HETATM 53 H HO3A NAP . . . F 3 221.69 215.043 168.933 0 86.57 ? HO3A NAP 3500 B 1 
HETATM 54 H H2B NAP . . . F 3 225.326 215.599 168.402 0 86.57 ? H2B NAP 3500 B 1 
HETATM 55 H H1B NAP . . . F 3 223.81 215.314 170.964 0 86.57 ? H1B NAP 3500 B 1 
HETATM 56 H H8A NAP . . . F 3 224.989 215.114 172.869 0 86.57 ? H8A NAP 3500 B 1 
HETATM 57 H H61A NAP . . . F 3 229.319 217.376 173.339 0 86.57 ? H61A NAP 3500 B 1 
HETATM 58 H H62A NAP . . . F 3 230.588 217.819 172.241 0 86.57 ? H62A NAP 3500 B 1 
HETATM 59 H H2A NAP . . . F 3 228.706 217.225 168.057 0 86.57 ? H2A NAP 3500 B 1 
HETATM 60 H H51N NAP . . . F 3 223.446 206.874 170.134 0 86.57 ? H51N NAP 3500 B 1 
HETATM 61 H H52N NAP . . . F 3 224.526 208.28 170.11 0 86.57 ? H52N NAP 3500 B 1 
HETATM 62 H H4D NAP . . . F 3 225.828 206.237 170.414 0 86.57 ? H4D NAP 3500 B 1 
HETATM 63 H H3D NAP . . . F 3 226.185 208.142 168.39 0 86.57 ? H3D NAP 3500 B 1 
HETATM 64 H HO3N NAP . . . F 3 228.091 207.9 169.294 0 86.57 ? HO3N NAP 3500 B 1 
HETATM 65 H H2D NAP . . . F 3 226.029 206.935 166.501 0 86.57 ? H2D NAP 3500 B 1 
HETATM 66 H HO2N NAP . . . F 3 228.092 206.619 166.216 0 86.57 ? HO2N NAP 3500 B 1 
HETATM 67 H H1D NAP . . . F 3 226.399 204.255 167.628 0 86.57 ? H1D NAP 3500 B 1 
HETATM 68 H H2N NAP . . . F 3 226.339 204.064 165.138 0 86.57 ? H2N NAP 3500 B 1 
HETATM 69 H H71N NAP . . . F 3 225.086 203.794 160.741 0 86.57 ? H71N NAP 3500 B 1 
HETATM 70 H H72N NAP . . . F 3 224.195 205.031 161.572 0 86.57 ? H72N NAP 3500 B 1 
HETATM 71 H H4N NAP . . . F 3 222.405 204.289 163.412 0 86.57 ? H4N NAP 3500 B 1 
HETATM 72 H H5N NAP . . . F 3 221.54 205.261 165.543 0 86.57 ? H5N NAP 3500 B 1 
HETATM 73 H H6N NAP . . . F 3 223.039 205.625 167.428 0 86.57 ? H6N NAP 3500 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           73 
#