data_7CQ5 # _model_server_result.job_id ehUWGVdCt4TIaYZRWhOikg _model_server_result.datetime_utc '2024-11-25 16:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":901}' # _entry.id 7CQ5 # _exptl.entry_id 7CQ5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CQ5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 84 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 101 A CYS 101 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 112 A CYS 112 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 174 A CYS 174 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 221 A CYS 221 1_555 A SG CYS 275 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 84 B CYS 84 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 101 B CYS 101 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 B SG CYS 112 B CYS 112 1_555 B SG CYS 171 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 B SG CYS 174 B CYS 174 1_555 B SG CYS 255 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 221 B CYS 221 1_555 B SG CYS 275 B CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 458 C CYS 438 1_555 C SG CYS 474 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 D SG CYS 458 D CYS 438 1_555 D SG CYS 474 D CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 263 A ASN 263 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 263 B ASN 263 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D NE2 HIS 788 D HIS 768 1_555 J O2B ATP . D ATP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CQ5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP C 1 901 901 ATP ATP . H 5 CL C 1 902 902 CL CL . I 5 CL C 1 903 903 CL CL . J 4 ATP D 1 901 901 ATP ATP . K 5 CL D 1 902 902 CL CL . L 5 CL D 1 903 903 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 123.358 130.134 162.86 1 29.6 ? PG ATP 901 D 1 HETATM 2 O O1G ATP . . . J 4 123.497 131.359 163.714 1 29.6 ? O1G ATP 901 D 1 HETATM 3 O O2G ATP . . . J 4 122.048 130.088 162.118 1 29.6 ? O2G ATP 901 D 1 HETATM 4 O O3G ATP . . . J 4 124.538 129.918 161.963 1 29.6 ? O3G ATP 901 D 1 HETATM 5 P PB ATP . . . J 4 122.25 128.226 164.82 1 29.6 ? PB ATP 901 D 1 HETATM 6 O O1B ATP . . . J 4 121.35 127.375 164.002 1 29.6 ? O1B ATP 901 D 1 HETATM 7 O O2B ATP . . . J 4 122.946 127.645 166.017 1 29.6 ? O2B ATP 901 D 1 HETATM 8 O O3B ATP . . . J 4 123.353 128.886 163.87 1 29.6 ? O3B ATP 901 D 1 HETATM 9 P PA ATP . . . J 4 119.841 129.876 164.948 1 29.6 ? PA ATP 901 D 1 HETATM 10 O O1A ATP . . . J 4 119.006 128.808 165.557 1 29.6 ? O1A ATP 901 D 1 HETATM 11 O O2A ATP . . . J 4 119.614 130.173 163.506 1 29.6 ? O2A ATP 901 D 1 HETATM 12 O O3A ATP . . . J 4 121.386 129.518 165.207 1 29.6 ? O3A ATP 901 D 1 HETATM 13 O O5' ATP . . . J 4 119.681 131.224 165.797 1 29.6 ? O5' ATP 901 D 1 HETATM 14 C C5' ATP . . . J 4 118.357 131.732 166.112 1 29.6 ? C5' ATP 901 D 1 HETATM 15 C C4' ATP . . . J 4 118.088 131.59 167.592 1 29.6 ? C4' ATP 901 D 1 HETATM 16 O O4' ATP . . . J 4 118.021 130.181 167.935 1 29.6 ? O4' ATP 901 D 1 HETATM 17 C C3' ATP . . . J 4 119.133 132.198 168.541 1 29.6 ? C3' ATP 901 D 1 HETATM 18 O O3' ATP . . . J 4 118.482 132.888 169.598 1 29.6 ? O3' ATP 901 D 1 HETATM 19 C C2' ATP . . . J 4 119.853 130.96 169.081 1 29.6 ? C2' ATP 901 D 1 HETATM 20 O O2' ATP . . . J 4 120.514 131.14 170.314 1 29.6 ? O2' ATP 901 D 1 HETATM 21 C C1' ATP . . . J 4 118.702 129.973 169.149 1 29.6 ? C1' ATP 901 D 1 HETATM 22 N N9 ATP . . . J 4 119.152 128.592 169.19 1 29.6 ? N9 ATP 901 D 1 HETATM 23 C C8 ATP . . . J 4 120.083 127.99 168.383 1 29.6 ? C8 ATP 901 D 1 HETATM 24 N N7 ATP . . . J 4 120.257 126.721 168.668 1 29.6 ? N7 ATP 901 D 1 HETATM 25 C C5 ATP . . . J 4 119.396 126.481 169.731 1 29.6 ? C5 ATP 901 D 1 HETATM 26 C C6 ATP . . . J 4 119.116 125.33 170.487 1 29.6 ? C6 ATP 901 D 1 HETATM 27 N N6 ATP . . . J 4 119.692 124.151 170.277 1 29.6 ? N6 ATP 901 D 1 HETATM 28 N N1 ATP . . . J 4 118.196 125.443 171.474 1 29.6 ? N1 ATP 901 D 1 HETATM 29 C C2 ATP . . . J 4 117.618 126.633 171.68 1 29.6 ? C2 ATP 901 D 1 HETATM 30 N N3 ATP . . . J 4 117.802 127.778 171.032 1 29.6 ? N3 ATP 901 D 1 HETATM 31 C C4 ATP . . . J 4 118.716 127.632 170.061 1 29.6 ? C4 ATP 901 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #