data_7CQE
#
_model_server_result.job_id            7QVhMqqEERXhKZ70vvW-hg 
_model_server_result.datetime_utc      '2024-10-11 10:19:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cqe 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":906}' 
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_entry.id    7CQE 
#
_exptl.entry_id    7CQE 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              362.422 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          118.42 
_cell.angle_gamma         90 
_cell.entry_id            7CQE 
_cell.length_a            116.118 
_cell.length_b            69.203 
_cell.length_c            92.606 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7CQE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,K 1 1 
B,I,J,L 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
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_chem_comp.formula           'C17 H19 F N4 O2 S' 
_chem_comp.formula_weight    362.422 
_chem_comp.id                YDJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 YDJ sing 376 n y 
C1 C6 YDJ doub 377 n y 
C2 C3 YDJ doub 378 n y 
C3 C4 YDJ sing 379 n y 
C3 C7 YDJ sing 380 n y 
C4 C5 YDJ doub 381 n y 
C5 C6 YDJ sing 382 n y 
C5 F1 YDJ sing 383 n n 
C7 C8 YDJ doub 384 n y 
C7 S1 YDJ sing 385 n y 
C8 C9 YDJ sing 386 n y 
C9 C10 YDJ doub 387 n y 
C9 N3 YDJ sing 388 n n 
C10 S1 YDJ sing 389 n y 
C10 C11 YDJ sing 390 n n 
C11 O1 YDJ doub 391 n n 
C11 N1 YDJ sing 392 n n 
N1 C12 YDJ sing 393 n n 
C12 C13 YDJ sing 394 n n 
C12 C16 YDJ sing 395 n n 
C13 C14 YDJ sing 396 n n 
C14 C15 YDJ sing 397 n n 
C15 N2 YDJ sing 398 n n 
N2 C16 YDJ sing 399 n n 
N3 C17 YDJ sing 400 n n 
C17 O2 YDJ doub 401 n n 
C17 N4 YDJ sing 402 n n 
C1 H1 YDJ sing 403 n n 
C2 H2 YDJ sing 404 n n 
C6 H6 YDJ sing 405 n n 
C4 H4 YDJ sing 406 n n 
C8 H8 YDJ sing 407 n n 
N3 H3 YDJ sing 408 n n 
N1 HA YDJ sing 409 n n 
C12 H12 YDJ sing 410 n n 
C13 H131 YDJ sing 411 n n 
C13 H132 YDJ sing 412 n n 
C16 H161 YDJ sing 413 n n 
C16 H162 YDJ sing 414 n n 
C14 H141 YDJ sing 415 n n 
C14 H142 YDJ sing 416 n n 
C15 H151 YDJ sing 417 n n 
C15 H152 YDJ sing 418 n n 
N2 HB YDJ sing 419 n n 
N4 H41N YDJ sing 420 n n 
N4 H42N YDJ sing 421 n n 
#
_atom_sites.entry_id                     7CQE 
_atom_sites.fract_transf_matrix[1][1]    0.008612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004661 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 901 1 CL CL . 
D 2 CL A 1 902 2 CL CL . 
E 2 CL A 1 903 3 CL CL . 
F 2 CL A 1 904 4 CL CL . 
G 2 CL A 1 905 5 CL CL . 
H 3 YDJ A 1 906 2 YDJ DRG . 
I 2 CL C 1 901 6 CL CL . 
J 3 YDJ C 1 902 1 YDJ DRG . 
K 4 HOH A 1 1001 2 HOH HOH . 
K 4 HOH A 2 1002 8 HOH HOH . 
K 4 HOH A 3 1003 20 HOH HOH . 
K 4 HOH A 4 1004 19 HOH HOH . 
K 4 HOH A 5 1005 10 HOH HOH . 
K 4 HOH A 6 1006 18 HOH HOH . 
K 4 HOH A 7 1007 21 HOH HOH . 
K 4 HOH A 8 1008 9 HOH HOH . 
L 4 HOH C 1 1001 11 HOH HOH . 
L 4 HOH C 2 1002 14 HOH HOH . 
L 4 HOH C 3 1003 13 HOH HOH . 
L 4 HOH C 4 1004 3 HOH HOH . 
L 4 HOH C 5 1005 22 HOH HOH . 
L 4 HOH C 6 1006 6 HOH HOH . 
L 4 HOH C 7 1007 4 HOH HOH . 
L 4 HOH C 8 1008 17 HOH HOH . 
L 4 HOH C 9 1009 15 HOH HOH . 
L 4 HOH C 10 1010 23 HOH HOH . 
L 4 HOH C 11 1011 16 HOH HOH . 
L 4 HOH C 12 1012 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YDJ . . . H 3 5.319 -6.514 36.312 1 36.23 ? C1 YDJ 906 A 1 
HETATM 2 C C2 YDJ . . . H 3 4.709 -7.722 35.987 1 35.46 ? C2 YDJ 906 A 1 
HETATM 3 C C3 YDJ . . . H 3 4.285 -8.061 34.713 1 33.34 ? C3 YDJ 906 A 1 
HETATM 4 C C4 YDJ . . . H 3 4.488 -7.145 33.73 1 36.41 ? C4 YDJ 906 A 1 
HETATM 5 C C5 YDJ . . . H 3 5.095 -5.947 34.027 1 39.43 ? C5 YDJ 906 A 1 
HETATM 6 C C6 YDJ . . . H 3 5.534 -5.615 35.305 1 37.98 ? C6 YDJ 906 A 1 
HETATM 7 F F1 YDJ . . . H 3 5.232 -5.145 33.041 1 43.73 ? F1 YDJ 906 A 1 
HETATM 8 C C7 YDJ . . . H 3 3.673 -9.223 34.401 1 32.78 ? C7 YDJ 906 A 1 
HETATM 9 C C8 YDJ . . . H 3 3.053 -10.045 35.28 1 29.98 ? C8 YDJ 906 A 1 
HETATM 10 C C9 YDJ . . . H 3 2.472 -11.133 34.727 1 28.3 ? C9 YDJ 906 A 1 
HETATM 11 C C10 YDJ . . . H 3 2.657 -11.234 33.386 1 30.78 ? C10 YDJ 906 A 1 
HETATM 12 S S1 YDJ . . . H 3 3.536 -9.856 32.888 1 27.32 ? S1 YDJ 906 A 1 
HETATM 13 C C11 YDJ . . . H 3 2.221 -12.259 32.583 1 30.22 ? C11 YDJ 906 A 1 
HETATM 14 O O1 YDJ . . . H 3 1.447 -13.145 33.001 1 27.31 ? O1 YDJ 906 A 1 
HETATM 15 N N1 YDJ . . . H 3 2.734 -12.245 31.319 1 32.08 ? N1 YDJ 906 A 1 
HETATM 16 C C12 YDJ . . . H 3 2.51 -13.329 30.323 1 34.15 ? C12 YDJ 906 A 1 
HETATM 17 C C13 YDJ . . . H 3 2.013 -12.806 28.98 1 35.18 ? C13 YDJ 906 A 1 
HETATM 18 C C14 YDJ . . . H 3 1.659 -14.014 28.213 1 34.76 ? C14 YDJ 906 A 1 
HETATM 19 C C15 YDJ . . . H 3 2.948 -14.854 27.947 1 34.7 ? C15 YDJ 906 A 1 
HETATM 20 N N2 YDJ . . . H 3 3.728 -15.167 29.163 1 35.26 ? N2 YDJ 906 A 1 
HETATM 21 C C16 YDJ . . . H 3 3.87 -14.031 30.088 1 33.81 ? C16 YDJ 906 A 1 
HETATM 22 N N3 YDJ . . . H 3 1.862 -12.084 35.423 1 26.31 ? N3 YDJ 906 A 1 
HETATM 23 C C17 YDJ . . . H 3 1.945 -12.21 36.756 1 24.78 ? C17 YDJ 906 A 1 
HETATM 24 O O2 YDJ . . . H 3 2.324 -11.347 37.521 1 22.46 ? O2 YDJ 906 A 1 
HETATM 25 N N4 YDJ . . . H 3 1.502 -13.347 37.244 1 25.79 ? N4 YDJ 906 A 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
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