data_7CQK
#
_model_server_result.job_id            6jDREwN_Z4TStcTBXqY4ng 
_model_server_result.datetime_utc      '2025-08-31 08:45:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    7CQK 
#
_exptl.entry_id    7CQK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1019.97 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-(2-oxidanylideneheptadecylsulfanyl)ethylamino]propyl]amino]butyl] hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C38 H68 N7 O17 P3 S' 
_chem_comp.formula_weight    1019.97 
_chem_comp.id                GE0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-(2-oxidanylideneheptadecylsulfanyl)ethylamino]propyl]amino]butyl] hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OCN CBX GE0 doub 83 n n 
CBX CBW GE0 sing 84 n n 
CBX CBY GE0 sing 85 n n 
CBW SAA GE0 sing 86 n n 
CBZ CBY GE0 sing 87 n n 
CBZ CCA GE0 sing 88 n n 
CCA CCB GE0 sing 89 n n 
CAB SAA GE0 sing 90 n n 
CAB CAC GE0 sing 91 n n 
C2 N1 GE0 doub 92 n y 
C2 N3 GE0 sing 93 n y 
N1 C6 GE0 sing 94 n y 
CCB CCC GE0 sing 95 n n 
N3 C4 GE0 doub 96 n y 
CAC NAD GE0 sing 97 n n 
CCC CCD GE0 sing 98 n n 
NAD CAE GE0 sing 99 n n 
C6 N6 GE0 sing 100 n n 
C6 C5 GE0 doub 101 n y 
OBA PAY GE0 doub 102 n n 
C4 C5 GE0 sing 103 n y 
C4 N9 GE0 sing 104 n y 
CCD CCE GE0 sing 105 n n 
CAE OBV GE0 doub 106 n n 
CAE CAF GE0 sing 107 n n 
C5 N7 GE0 sing 108 n y 
CAF CAG GE0 sing 109 n n 
CAG NAH GE0 sing 110 n n 
C1' N9 GE0 sing 111 n n 
C1' O4' GE0 sing 112 n n 
C1' C2' GE0 sing 113 n n 
N9 C8 GE0 sing 114 n y 
O3' PAY GE0 sing 115 n n 
O3' C3' GE0 sing 116 n n 
CCE CCF GE0 sing 117 n n 
O4' C4' GE0 sing 118 n n 
PAY OAZ GE0 sing 119 n n 
PAY OBB GE0 sing 120 n n 
NAH CAI GE0 sing 121 n n 
O2' C2' GE0 sing 122 n n 
N7 C8 GE0 doub 123 n y 
OBU CAI GE0 doub 124 n n 
C4' C3' GE0 sing 125 n n 
C4' C5' GE0 sing 126 n n 
C2' C3' GE0 sing 127 n n 
CAI CAJ GE0 sing 128 n n 
OAK CAJ GE0 sing 129 n n 
CCF CCG GE0 sing 130 n n 
CAJ CAL GE0 sing 131 n n 
CCG CCH GE0 sing 132 n n 
C5' O5' GE0 sing 133 n n 
O5' PAS GE0 sing 134 n n 
CAL CAO GE0 sing 135 n n 
CAL CAM GE0 sing 136 n n 
CAL CAN GE0 sing 137 n n 
CAO OAP GE0 sing 138 n n 
CCH CCI GE0 sing 139 n n 
OBR PAS GE0 doub 140 n n 
PAS OAR GE0 sing 141 n n 
PAS OBQ GE0 sing 142 n n 
OAP PAQ GE0 sing 143 n n 
OBS PAQ GE0 doub 144 n n 
CCI CCJ GE0 sing 145 n n 
OAR PAQ GE0 sing 146 n n 
PAQ OBT GE0 sing 147 n n 
CCJ CCK GE0 sing 148 n n 
CCK CCL GE0 sing 149 n n 
CCL CCM GE0 sing 150 n n 
C8 H1 GE0 sing 151 n n 
C1' H2 GE0 sing 152 n n 
C2 H3 GE0 sing 153 n n 
C2' H4 GE0 sing 154 n n 
C3' H5 GE0 sing 155 n n 
C4' H6 GE0 sing 156 n n 
C5' H7 GE0 sing 157 n n 
C5' H8 GE0 sing 158 n n 
CAB H9 GE0 sing 159 n n 
CAB H10 GE0 sing 160 n n 
CAC H11 GE0 sing 161 n n 
CAC H12 GE0 sing 162 n n 
CAF H13 GE0 sing 163 n n 
CAF H14 GE0 sing 164 n n 
CAG H15 GE0 sing 165 n n 
CAG H16 GE0 sing 166 n n 
CAJ H17 GE0 sing 167 n n 
CAM H18 GE0 sing 168 n n 
CAM H19 GE0 sing 169 n n 
CAM H20 GE0 sing 170 n n 
CAN H21 GE0 sing 171 n n 
CAN H22 GE0 sing 172 n n 
CAN H23 GE0 sing 173 n n 
CAO H24 GE0 sing 174 n n 
CAO H25 GE0 sing 175 n n 
CBW H26 GE0 sing 176 n n 
CBW H27 GE0 sing 177 n n 
CBY H28 GE0 sing 178 n n 
CBY H29 GE0 sing 179 n n 
CBZ H30 GE0 sing 180 n n 
CBZ H31 GE0 sing 181 n n 
CCA H32 GE0 sing 182 n n 
CCA H33 GE0 sing 183 n n 
CCB H34 GE0 sing 184 n n 
CCB H35 GE0 sing 185 n n 
CCC H36 GE0 sing 186 n n 
CCC H37 GE0 sing 187 n n 
CCD H38 GE0 sing 188 n n 
CCD H39 GE0 sing 189 n n 
CCE H40 GE0 sing 190 n n 
CCE H41 GE0 sing 191 n n 
CCF H42 GE0 sing 192 n n 
CCF H43 GE0 sing 193 n n 
CCG H44 GE0 sing 194 n n 
CCG H45 GE0 sing 195 n n 
CCH H46 GE0 sing 196 n n 
CCH H47 GE0 sing 197 n n 
CCI H48 GE0 sing 198 n n 
CCI H49 GE0 sing 199 n n 
CCJ H50 GE0 sing 200 n n 
CCJ H51 GE0 sing 201 n n 
CCK H52 GE0 sing 202 n n 
CCK H53 GE0 sing 203 n n 
CCL H54 GE0 sing 204 n n 
CCL H55 GE0 sing 205 n n 
CCM H56 GE0 sing 206 n n 
CCM H57 GE0 sing 207 n n 
CCM H58 GE0 sing 208 n n 
N6 H59 GE0 sing 209 n n 
N6 H60 GE0 sing 210 n n 
NAD H61 GE0 sing 211 n n 
NAH H62 GE0 sing 212 n n 
O2' H63 GE0 sing 213 n n 
OAK H64 GE0 sing 214 n n 
OAZ H65 GE0 sing 215 n n 
OBB H66 GE0 sing 216 n n 
OBQ H67 GE0 sing 217 n n 
OBT H68 GE0 sing 218 n n 
#
_atom_sites.entry_id                     7CQK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 PLS T 1 601 1420 PLS PLS . 
G 6 GE0 A 1 201 402 GE0 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GE0 . . . G 6 127.298 161.36 122.549 1 53.65 ? C4 GE0 201 A 1 
HETATM 2 C C5 GE0 . . . G 6 128.078 162.351 122.976 1 53.65 ? C5 GE0 201 A 1 
HETATM 3 C C6 GE0 . . . G 6 128.989 162.893 122.171 1 53.65 ? C6 GE0 201 A 1 
HETATM 4 C C8 GE0 . . . G 6 126.771 161.79 124.586 1 53.65 ? C8 GE0 201 A 1 
HETATM 5 N N1 GE0 . . . G 6 129.159 162.472 120.912 1 53.65 ? N1 GE0 201 A 1 
HETATM 6 N N3 GE0 . . . G 6 127.412 160.89 121.301 1 53.65 ? N3 GE0 201 A 1 
HETATM 7 C C1' GE0 . . . G 6 125.46 159.959 123.509 1 53.65 ? C1' GE0 201 A 1 
HETATM 8 C C2 GE0 . . . G 6 128.358 161.438 120.434 1 53.65 ? C2 GE0 201 A 1 
HETATM 9 C C2' GE0 . . . G 6 125.723 158.892 124.528 1 53.65 ? C2' GE0 201 A 1 
HETATM 10 C C3' GE0 . . . G 6 124.344 158.311 124.699 1 53.65 ? C3' GE0 201 A 1 
HETATM 11 C C4' GE0 . . . G 6 123.461 159.534 124.617 1 53.65 ? C4' GE0 201 A 1 
HETATM 12 C C5' GE0 . . . G 6 123.139 160.027 126.028 1 53.65 ? C5' GE0 201 A 1 
HETATM 13 C CAB GE0 . . . G 6 125.376 172.775 121.708 1 53.65 ? CAB GE0 201 A 1 
HETATM 14 C CAC GE0 . . . G 6 125.937 171.715 122.659 1 53.65 ? CAC GE0 201 A 1 
HETATM 15 C CAE GE0 . . . G 6 125.085 169.726 123.844 1 53.65 ? CAE GE0 201 A 1 
HETATM 16 C CAF GE0 . . . G 6 123.84 168.967 124.294 1 53.65 ? CAF GE0 201 A 1 
HETATM 17 C CAG GE0 . . . G 6 124.003 167.477 123.982 1 53.65 ? CAG GE0 201 A 1 
HETATM 18 C CAI GE0 . . . G 6 125.046 166.026 125.68 1 53.65 ? CAI GE0 201 A 1 
HETATM 19 C CAJ GE0 . . . G 6 126.365 165.549 126.293 1 53.65 ? CAJ GE0 201 A 1 
HETATM 20 C CAL GE0 . . . G 6 126.175 165.278 127.788 1 53.65 ? CAL GE0 201 A 1 
HETATM 21 C CAM GE0 . . . G 6 125.223 166.324 128.366 1 53.65 ? CAM GE0 201 A 1 
HETATM 22 C CAN GE0 . . . G 6 127.528 165.374 128.497 1 53.65 ? CAN GE0 201 A 1 
HETATM 23 C CAO GE0 . . . G 6 125.568 163.882 127.984 1 53.65 ? CAO GE0 201 A 1 
HETATM 24 C CBW GE0 . . . G 6 126.107 175.379 120.877 1 53.65 ? CBW GE0 201 A 1 
HETATM 25 C CBX GE0 . . . G 6 125.146 176.523 120.536 1 53.65 ? CBX GE0 201 A 1 
HETATM 26 C CBY GE0 . . . G 6 123.685 176.119 120.323 1 53.65 ? CBY GE0 201 A 1 
HETATM 27 C CBZ GE0 . . . G 6 122.791 177.353 120.421 1 53.65 ? CBZ GE0 201 A 1 
HETATM 28 C CCA GE0 . . . G 6 121.598 177.051 121.329 1 53.65 ? CCA GE0 201 A 1 
HETATM 29 C CCB GE0 . . . G 6 121.404 178.196 122.326 1 53.65 ? CCB GE0 201 A 1 
HETATM 30 C CCC GE0 . . . G 6 120.03 178.077 122.992 1 53.65 ? CCC GE0 201 A 1 
HETATM 31 C CCD GE0 . . . G 6 119.977 178.983 124.224 1 53.65 ? CCD GE0 201 A 1 
HETATM 32 C CCE GE0 . . . G 6 119.227 178.269 125.352 1 53.65 ? CCE GE0 201 A 1 
HETATM 33 C CCF GE0 . . . G 6 119.32 179.089 126.643 1 53.65 ? CCF GE0 201 A 1 
HETATM 34 C CCG GE0 . . . G 6 120.329 178.44 127.593 1 53.65 ? CCG GE0 201 A 1 
HETATM 35 C CCH GE0 . . . G 6 119.685 178.256 128.967 1 53.65 ? CCH GE0 201 A 1 
HETATM 36 C CCI GE0 . . . G 6 120.768 178.296 130.046 1 53.65 ? CCI GE0 201 A 1 
HETATM 37 C CCJ GE0 . . . G 6 120.14 178.011 131.413 1 53.65 ? CCJ GE0 201 A 1 
HETATM 38 C CCK GE0 . . . G 6 120.794 178.901 132.473 1 53.65 ? CCK GE0 201 A 1 
HETATM 39 C CCL GE0 . . . G 6 120.794 178.179 133.821 1 53.65 ? CCL GE0 201 A 1 
HETATM 40 C CCM GE0 . . . G 6 121.134 179.176 134.929 1 53.65 ? CCM GE0 201 A 1 
HETATM 41 N N6 GE0 . . . G 6 129.722 163.877 122.684 1 53.65 ? N6 GE0 201 A 1 
HETATM 42 N N7 GE0 . . . G 6 127.75 162.615 124.236 1 53.65 ? N7 GE0 201 A 1 
HETATM 43 N N9 GE0 . . . G 6 126.494 161.013 123.546 1 53.65 ? N9 GE0 201 A 1 
HETATM 44 N NAD GE0 . . . G 6 124.851 170.859 123.163 1 53.65 ? NAD GE0 201 A 1 
HETATM 45 N NAH GE0 . . . G 6 125.169 166.925 124.69 1 53.65 ? NAH GE0 201 A 1 
HETATM 46 O O2' GE0 . . . G 6 126.609 157.908 123.982 1 53.65 ? O2' GE0 201 A 1 
HETATM 47 O O3' GE0 . . . G 6 124.039 157.443 123.602 1 53.65 ? O3' GE0 201 A 1 
HETATM 48 O O4' GE0 . . . G 6 124.238 160.555 123.963 1 53.65 ? O4' GE0 201 A 1 
HETATM 49 O O5' GE0 . . . G 6 124.322 160.546 126.642 1 53.65 ? O5' GE0 201 A 1 
HETATM 50 O OAK GE0 . . . G 6 126.789 164.351 125.633 1 53.65 ? OAK GE0 201 A 1 
HETATM 51 O OAP GE0 . . . G 6 126.135 163.225 129.123 1 53.65 ? OAP GE0 201 A 1 
HETATM 52 O OAR GE0 . . . G 6 126.071 160.717 128.558 1 53.65 ? OAR GE0 201 A 1 
HETATM 53 O OAZ GE0 . . . G 6 123.286 155.35 124.879 1 53.65 ? OAZ GE0 201 A 1 
HETATM 54 O OBA GE0 . . . G 6 122.882 155.509 122.359 1 53.65 ? OBA GE0 201 A 1 
HETATM 55 O OBB GE0 . . . G 6 121.508 156.978 123.964 1 53.65 ? OBB GE0 201 A 1 
HETATM 56 O OBQ GE0 . . . G 6 123.894 159.438 128.942 1 53.65 ? OBQ GE0 201 A 1 
HETATM 57 O OBR GE0 . . . G 6 125.669 158.457 127.381 1 53.65 ? OBR GE0 201 A 1 
HETATM 58 O OBS GE0 . . . G 6 123.939 161.972 129.25 1 53.65 ? OBS GE0 201 A 1 
HETATM 59 O OBT GE0 . . . G 6 125.768 161.512 131.021 1 53.65 ? OBT GE0 201 A 1 
HETATM 60 O OBU GE0 . . . G 6 123.97 165.592 126.085 1 53.65 ? OBU GE0 201 A 1 
HETATM 61 O OBV GE0 . . . G 6 126.205 169.294 124.107 1 53.65 ? OBV GE0 201 A 1 
HETATM 62 O OCN GE0 . . . G 6 125.524 177.692 120.439 1 53.65 ? OCN GE0 201 A 1 
HETATM 63 P PAQ GE0 . . . G 6 125.511 161.811 129.589 1 53.65 ? PAQ GE0 201 A 1 
HETATM 64 P PAS GE0 . . . G 6 125.029 159.72 127.828 1 53.65 ? PAS GE0 201 A 1 
HETATM 65 P PAY GE0 . . . G 6 122.832 156.372 123.717 1 53.65 ? PAY GE0 201 A 1 
HETATM 66 S SAA GE0 . . . G 6 125.508 174.481 122.357 1 53.65 ? SAA GE0 201 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           426 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           66 
#