data_7CQK
#
_model_server_result.job_id            w6oTO0gRmMedzlN8I-8XPA 
_model_server_result.datetime_utc      '2025-08-31 03:11:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
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_entry.id    7CQK 
#
_exptl.entry_id    7CQK 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              336.235 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H17 N2 O8 P' 
_chem_comp.formula_weight    336.235 
_chem_comp.id                PLS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PYRIDOXYL-SERINE-5-MONOPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PLS sing 394 n n 
N C4A PLS sing 395 n n 
N HN PLS sing 396 n n 
CA CB PLS sing 397 n n 
CA C PLS sing 398 n n 
CA HA PLS sing 399 n n 
CB OG PLS sing 400 n n 
CB HB1 PLS sing 401 n n 
CB HB2 PLS sing 402 n n 
OG HOG PLS sing 403 n n 
C O PLS doub 404 n n 
C OXT PLS sing 405 n n 
OXT HXT PLS sing 406 n n 
N1 C2 PLS doub 407 n y 
N1 C6 PLS sing 408 n y 
C2 C2A PLS sing 409 n n 
C2 C3 PLS sing 410 n y 
C2A H2A1 PLS sing 411 n n 
C2A H2A2 PLS sing 412 n n 
C2A H2A3 PLS sing 413 n n 
C3 O3 PLS sing 414 n n 
C3 C4 PLS doub 415 n y 
O3 HO3 PLS sing 416 n n 
C4 C4A PLS sing 417 n n 
C4 C5 PLS sing 418 n y 
C4A H4A1 PLS sing 419 n n 
C4A H4A2 PLS sing 420 n n 
C5 C6 PLS doub 421 n y 
C5 C5A PLS sing 422 n n 
C6 H6 PLS sing 423 n n 
C5A O4P PLS sing 424 n n 
C5A H5A1 PLS sing 425 n n 
C5A H5A2 PLS sing 426 n n 
O4P P PLS sing 427 n n 
P O1P PLS doub 428 n n 
P O2P PLS sing 429 n n 
P O3P PLS sing 430 n n 
O2P HOP2 PLS sing 431 n n 
O3P HOP3 PLS sing 432 n n 
#
_atom_sites.entry_id                     7CQK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 PLS T 1 601 1420 PLS PLS . 
G 6 GE0 A 1 201 402 GE0 DRG . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PLS . . . F 5 125.078 175.81 116.252 1 46.83 ? N PLS 601 T 1 
HETATM 2 C CA PLS . . . F 5 124.695 177.152 116.643 1 46.83 ? CA PLS 601 T 1 
HETATM 3 C CB PLS . . . F 5 123.856 177.795 115.545 1 46.83 ? CB PLS 601 T 1 
HETATM 4 O OG PLS . . . F 5 124.282 179.148 115.346 1 46.83 ? OG PLS 601 T 1 
HETATM 5 C C PLS . . . F 5 123.921 177.154 117.928 1 46.83 ? C PLS 601 T 1 
HETATM 6 O O PLS . . . F 5 123.242 176.145 118.217 1 46.83 ? O PLS 601 T 1 
HETATM 7 O OXT PLS . . . F 5 123.985 178.165 118.662 1 46.83 ? OXT PLS 601 T 1 
HETATM 8 N N1 PLS . . . F 5 125.711 171.828 113.246 1 46.83 ? N1 PLS 601 T 1 
HETATM 9 C C2 PLS . . . F 5 126.926 172.069 113.796 1 46.83 ? C2 PLS 601 T 1 
HETATM 10 C C2A PLS . . . F 5 128.028 171.051 113.659 1 46.83 ? C2A PLS 601 T 1 
HETATM 11 C C3 PLS . . . F 5 127.173 173.334 114.533 1 46.83 ? C3 PLS 601 T 1 
HETATM 12 O O3 PLS . . . F 5 128.386 173.598 115.094 1 46.83 ? O3 PLS 601 T 1 
HETATM 13 C C4 PLS . . . F 5 126.053 174.295 114.635 1 46.83 ? C4 PLS 601 T 1 
HETATM 14 C C4A PLS . . . F 5 126.208 175.61 115.364 1 46.83 ? C4A PLS 601 T 1 
HETATM 15 C C5 PLS . . . F 5 124.774 173.912 113.989 1 46.83 ? C5 PLS 601 T 1 
HETATM 16 C C6 PLS . . . F 5 124.683 172.689 113.328 1 46.83 ? C6 PLS 601 T 1 
HETATM 17 C C5A PLS . . . F 5 123.581 174.836 114.046 1 46.83 ? C5A PLS 601 T 1 
HETATM 18 O O4P PLS . . . F 5 122.658 174.478 113.02 1 46.83 ? O4P PLS 601 T 1 
HETATM 19 P P PLS . . . F 5 121.83 175.61 112.229 1 46.83 ? P PLS 601 T 1 
HETATM 20 O O1P PLS . . . F 5 122.507 175.681 110.881 1 46.83 ? O1P PLS 601 T 1 
HETATM 21 O O2P PLS . . . F 5 122.003 176.847 113.078 1 46.83 ? O2P PLS 601 T 1 
HETATM 22 O O3P PLS . . . F 5 120.42 175.071 112.192 1 46.83 ? O3P PLS 601 T 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
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