data_7CQT # _model_server_result.job_id DWMBq10tzjIvua65_EYq9Q _model_server_result.datetime_utc '2024-11-15 13:08:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7CQT # _exptl.entry_id 7CQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.71 _cell.angle_gamma 90 _cell.entry_id 7CQT _cell.length_a 66.61 _cell.length_b 121.61 _cell.length_c 118.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 7CQT _atom_sites.fract_transf_matrix[1][1] 0.015013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000448 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACO A 1 501 501 ACO ACO . F 2 ACO B 1 501 501 ACO ACO . G 3 A3P C 1 501 501 A3P A3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . G 3 83.683 2.436 129.874 1 94.9 ? P1 A3P 501 C 1 HETATM 2 O O1P A3P . . . G 3 84.898 1.875 129.162 1 83.18 ? O1P A3P 501 C 1 HETATM 3 O O2P A3P . . . G 3 83.404 3.799 129.401 1 86.58 ? O2P A3P 501 C 1 HETATM 4 O O3P A3P . . . G 3 82.523 1.553 129.595 1 96.09 ? O3P A3P 501 C 1 HETATM 5 P P2 A3P . . . G 3 81.992 1.996 136.952 1 114.75 ? P2 A3P 501 C 1 HETATM 6 O O4P A3P . . . G 3 80.775 2.666 136.36 1 106.18 ? O4P A3P 501 C 1 HETATM 7 O O5P A3P . . . G 3 81.562 1.08 138.07 1 98.79 ? O5P A3P 501 C 1 HETATM 8 O O6P A3P . . . G 3 82.924 3.037 137.521 1 121.31 ? O6P A3P 501 C 1 HETATM 9 O O5' A3P . . . G 3 82.794 1.135 135.75 1 95.73 ? O5' A3P 501 C 1 HETATM 10 C C5' A3P . . . G 3 82.547 1.501 134.419 1 101.36 ? C5' A3P 501 C 1 HETATM 11 C C4' A3P . . . G 3 83.858 1.468 133.537 1 101.62 ? C4' A3P 501 C 1 HETATM 12 O O4' A3P . . . G 3 84.783 0.293 133.957 1 105.42 ? O4' A3P 501 C 1 HETATM 13 C C3' A3P . . . G 3 83.563 1.289 132.287 1 102.79 ? C3' A3P 501 C 1 HETATM 14 O O3' A3P . . . G 3 83.984 2.438 131.505 1 107.09 ? O3' A3P 501 C 1 HETATM 15 C C2' A3P . . . G 3 84.364 -0.102 131.826 1 104.2 ? C2' A3P 501 C 1 HETATM 16 O O2' A3P . . . G 3 84.807 -0.159 130.423 1 100.03 ? O2' A3P 501 C 1 HETATM 17 C C1' A3P . . . G 3 85.386 -0.13 132.576 1 105.59 ? C1' A3P 501 C 1 HETATM 18 N N9 A3P . . . G 3 85.978 -1.503 132.574 1 94.71 ? N9 A3P 501 C 1 HETATM 19 C C8 A3P . . . G 3 84.983 -2.386 132.738 1 99.27 ? C8 A3P 501 C 1 HETATM 20 N N7 A3P . . . G 3 85.511 -3.604 132.708 1 103.96 ? N7 A3P 501 C 1 HETATM 21 C C5 A3P . . . G 3 86.831 -3.474 132.527 1 102.91 ? C5 A3P 501 C 1 HETATM 22 C C6 A3P . . . G 3 87.817 -4.404 132.433 1 96.61 ? C6 A3P 501 C 1 HETATM 23 N N6 A3P . . . G 3 87.9 -5.834 132.482 1 83.23 ? N6 A3P 501 C 1 HETATM 24 N N1 A3P . . . G 3 89.055 -4.02 132.242 1 99.18 ? N1 A3P 501 C 1 HETATM 25 C C2 A3P . . . G 3 89.355 -2.699 132.142 1 95.74 ? C2 A3P 501 C 1 HETATM 26 N N3 A3P . . . G 3 88.386 -1.774 132.238 1 88.05 ? N3 A3P 501 C 1 HETATM 27 C C4 A3P . . . G 3 87.129 -2.17 132.434 1 93.72 ? C4 A3P 501 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #