data_7CRL
#
_model_server_result.job_id            MNVqwsb1BGEusk2peFIlIw 
_model_server_result.datetime_utc      '2024-11-13 07:18:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7crl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7CRL 
#
_exptl.entry_id    7CRL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.69 
_cell.angle_gamma         90 
_cell.entry_id            7CRL 
_cell.length_a            103.37 
_cell.length_b            50.09 
_cell.length_c            69.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CRL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             234 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              235 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              303 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.402 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 330 n n 
C1 C6 RET sing 331 n n 
C1 C16 RET sing 332 n n 
C1 C17 RET sing 333 n n 
C2 C3 RET sing 334 n n 
C2 H21 RET sing 335 n n 
C2 H22 RET sing 336 n n 
C3 C4 RET sing 337 n n 
C3 H31 RET sing 338 n n 
C3 H32 RET sing 339 n n 
C4 C5 RET sing 340 n n 
C4 H41 RET sing 341 n n 
C4 H42 RET sing 342 n n 
C5 C6 RET doub 343 n n 
C5 C18 RET sing 344 n n 
C6 C7 RET sing 345 n n 
C7 C8 RET doub 346 e n 
C7 H7 RET sing 347 n n 
C8 C9 RET sing 348 n n 
C8 H8 RET sing 349 n n 
C9 C10 RET doub 350 e n 
C9 C19 RET sing 351 n n 
C10 C11 RET sing 352 n n 
C10 H10 RET sing 353 n n 
C11 C12 RET doub 354 e n 
C11 H11 RET sing 355 n n 
C12 C13 RET sing 356 n n 
C12 H12 RET sing 357 n n 
C13 C14 RET doub 358 e n 
C13 C20 RET sing 359 n n 
C14 C15 RET sing 360 n n 
C14 H14 RET sing 361 n n 
C15 O1 RET doub 362 n n 
C15 H15 RET sing 363 n n 
C16 H161 RET sing 364 n n 
C16 H162 RET sing 365 n n 
C16 H163 RET sing 366 n n 
C17 H171 RET sing 367 n n 
C17 H172 RET sing 368 n n 
C17 H173 RET sing 369 n n 
C18 H181 RET sing 370 n n 
C18 H182 RET sing 371 n n 
C18 H183 RET sing 372 n n 
C19 H191 RET sing 373 n n 
C19 H192 RET sing 374 n n 
C19 H193 RET sing 375 n n 
C20 H201 RET sing 376 n n 
C20 H202 RET sing 377 n n 
C20 H203 RET sing 378 n n 
#
_atom_sites.entry_id                     7CRL 
_atom_sites.fract_transf_matrix[1][1]    0.009674 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003462 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015306 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 301 1 CL CL . 
C 2 CL A 1 302 2 CL CL . 
D 3 RET A 1 303 235 RET RET . 
E 4 OLA A 1 304 1 OLA OLA . 
F 4 OLA A 1 305 2 OLA OLA . 
G 4 OLA A 1 306 3 OLA OLA . 
H 4 OLA A 1 307 5 OLA OLA . 
I 4 OLA A 1 308 6 OLA OLA . 
J 4 OLA A 1 309 7 OLA OLA . 
K 4 OLA A 1 310 8 OLA OLA . 
L 5 HOH A 1 401 4 HOH HOH . 
L 5 HOH A 2 402 91 HOH HOH . 
L 5 HOH A 3 403 47 HOH HOH . 
L 5 HOH A 4 404 74 HOH HOH . 
L 5 HOH A 5 405 87 HOH HOH . 
L 5 HOH A 6 406 54 HOH HOH . 
L 5 HOH A 7 407 56 HOH HOH . 
L 5 HOH A 8 408 97 HOH HOH . 
L 5 HOH A 9 409 43 HOH HOH . 
L 5 HOH A 10 410 1 HOH HOH . 
L 5 HOH A 11 411 14 HOH HOH . 
L 5 HOH A 12 412 23 HOH HOH . 
L 5 HOH A 13 413 104 HOH HOH . 
L 5 HOH A 14 414 12 HOH HOH . 
L 5 HOH A 15 415 28 HOH HOH . 
L 5 HOH A 16 416 13 HOH HOH . 
L 5 HOH A 17 417 39 HOH HOH . 
L 5 HOH A 18 418 57 HOH HOH . 
L 5 HOH A 19 419 48 HOH HOH . 
L 5 HOH A 20 420 49 HOH HOH . 
L 5 HOH A 21 421 58 HOH HOH . 
L 5 HOH A 22 422 52 HOH HOH . 
L 5 HOH A 23 423 3 HOH HOH . 
L 5 HOH A 24 424 15 HOH HOH . 
L 5 HOH A 25 425 18 HOH HOH . 
L 5 HOH A 26 426 21 HOH HOH . 
L 5 HOH A 27 427 99 HOH HOH . 
L 5 HOH A 28 428 20 HOH HOH . 
L 5 HOH A 29 429 6 HOH HOH . 
L 5 HOH A 30 430 16 HOH HOH . 
L 5 HOH A 31 431 42 HOH HOH . 
L 5 HOH A 32 432 106 HOH HOH . 
L 5 HOH A 33 433 41 HOH HOH . 
L 5 HOH A 34 434 24 HOH HOH . 
L 5 HOH A 35 435 25 HOH HOH . 
L 5 HOH A 36 436 36 HOH HOH . 
L 5 HOH A 37 437 45 HOH HOH . 
L 5 HOH A 38 438 19 HOH HOH . 
L 5 HOH A 39 439 22 HOH HOH . 
L 5 HOH A 40 440 2 HOH HOH . 
L 5 HOH A 41 441 50 HOH HOH . 
L 5 HOH A 42 442 65 HOH HOH . 
L 5 HOH A 43 443 33 HOH HOH . 
L 5 HOH A 44 444 37 HOH HOH . 
L 5 HOH A 45 445 26 HOH HOH . 
L 5 HOH A 46 446 27 HOH HOH . 
L 5 HOH A 47 447 105 HOH HOH . 
L 5 HOH A 48 448 34 HOH HOH . 
L 5 HOH A 49 449 61 HOH HOH . 
L 5 HOH A 50 450 8 HOH HOH . 
L 5 HOH A 51 451 38 HOH HOH . 
L 5 HOH A 52 452 10 HOH HOH . 
L 5 HOH A 53 453 17 HOH HOH . 
L 5 HOH A 54 454 100 HOH HOH . 
L 5 HOH A 55 455 92 HOH HOH . 
L 5 HOH A 56 456 30 HOH HOH . 
L 5 HOH A 57 457 40 HOH HOH . 
L 5 HOH A 58 458 88 HOH HOH . 
L 5 HOH A 59 459 59 HOH HOH . 
L 5 HOH A 60 460 98 HOH HOH . 
L 5 HOH A 61 461 7 HOH HOH . 
L 5 HOH A 62 462 78 HOH HOH . 
L 5 HOH A 63 463 44 HOH HOH . 
L 5 HOH A 64 464 80 HOH HOH . 
L 5 HOH A 65 465 85 HOH HOH . 
L 5 HOH A 66 466 53 HOH HOH . 
L 5 HOH A 67 467 46 HOH HOH . 
L 5 HOH A 68 468 71 HOH HOH . 
L 5 HOH A 69 469 64 HOH HOH . 
L 5 HOH A 70 470 63 HOH HOH . 
L 5 HOH A 71 471 60 HOH HOH . 
L 5 HOH A 72 472 94 HOH HOH . 
L 5 HOH A 73 473 31 HOH HOH . 
L 5 HOH A 74 474 90 HOH HOH . 
L 5 HOH A 75 475 29 HOH HOH . 
L 5 HOH A 76 476 81 HOH HOH . 
L 5 HOH A 77 477 9 HOH HOH . 
L 5 HOH A 78 478 84 HOH HOH . 
L 5 HOH A 79 479 11 HOH HOH . 
L 5 HOH A 80 480 32 HOH HOH . 
L 5 HOH A 81 481 76 HOH HOH . 
L 5 HOH A 82 482 101 HOH HOH . 
L 5 HOH A 83 483 96 HOH HOH . 
L 5 HOH A 84 484 35 HOH HOH . 
L 5 HOH A 85 485 77 HOH HOH . 
L 5 HOH A 86 486 5 HOH HOH . 
L 5 HOH A 87 487 51 HOH HOH . 
L 5 HOH A 88 488 102 HOH HOH . 
L 5 HOH A 89 489 62 HOH HOH . 
L 5 HOH A 90 490 75 HOH HOH . 
L 5 HOH A 91 491 72 HOH HOH . 
L 5 HOH A 92 492 93 HOH HOH . 
L 5 HOH A 93 493 103 HOH HOH . 
L 5 HOH A 94 494 79 HOH HOH . 
L 5 HOH A 95 495 70 HOH HOH . 
L 5 HOH A 96 496 83 HOH HOH . 
L 5 HOH A 97 497 86 HOH HOH . 
L 5 HOH A 98 498 95 HOH HOH . 
L 5 HOH A 99 499 89 HOH HOH . 
L 5 HOH A 100 500 68 HOH HOH . 
L 5 HOH A 101 501 55 HOH HOH . 
L 5 HOH A 102 502 82 HOH HOH . 
L 5 HOH A 103 503 69 HOH HOH . 
L 5 HOH A 104 504 66 HOH HOH . 
L 5 HOH A 105 505 67 HOH HOH . 
L 5 HOH A 106 506 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . D 3 -21.32 -14.857 5.611 1 2.8 ? C1 RET 303 A 1 
HETATM 2 C C2 RET . . . D 3 -22.114 -13.915 6.791 1 2.91 ? C2 RET 303 A 1 
HETATM 3 C C3 RET . . . D 3 -23.523 -13.535 6.15 1 2.96 ? C3 RET 303 A 1 
HETATM 4 C C4 RET . . . D 3 -24.063 -14.527 5.16 1 2.81 ? C4 RET 303 A 1 
HETATM 5 C C5 RET . . . D 3 -23.283 -14.719 4.033 1 2.74 ? C5 RET 303 A 1 
HETATM 6 C C6 RET . . . D 3 -22.081 -14.783 4.163 1 2.71 ? C6 RET 303 A 1 
HETATM 7 C C7 RET . . . D 3 -21.275 -15.318 2.91 1 2.74 ? C7 RET 303 A 1 
HETATM 8 C C8 RET . . . D 3 -20.802 -16.536 2.944 1 2.78 ? C8 RET 303 A 1 
HETATM 9 C C9 RET . . . D 3 -20.007 -17.18 1.873 1 2.75 ? C9 RET 303 A 1 
HETATM 10 C C10 RET . . . D 3 -18.789 -17.745 2.302 1 2.73 ? C10 RET 303 A 1 
HETATM 11 C C11 RET . . . D 3 -17.929 -18.483 1.22 1 2.76 ? C11 RET 303 A 1 
HETATM 12 C C12 RET . . . D 3 -16.86 -19.379 1.381 1 2.72 ? C12 RET 303 A 1 
HETATM 13 C C13 RET . . . D 3 -16.331 -19.843 -0.018 1 2.81 ? C13 RET 303 A 1 
HETATM 14 C C14 RET . . . D 3 -15.232 -20.548 -0.418 1 2.78 ? C14 RET 303 A 1 
HETATM 15 C C15 RET . . . D 3 -14.129 -21.188 0.379 1 2.74 ? C15 RET 303 A 1 
HETATM 16 C C16 RET . . . D 3 -19.925 -14.309 5.278 1 2.88 ? C16 RET 303 A 1 
HETATM 17 C C17 RET . . . D 3 -21.275 -16.363 6.108 1 2.85 ? C17 RET 303 A 1 
HETATM 18 C C18 RET . . . D 3 -23.617 -14.03 2.712 1 2.79 ? C18 RET 303 A 1 
HETATM 19 C C19 RET . . . D 3 -20.562 -17.299 0.43 1 2.91 ? C19 RET 303 A 1 
HETATM 20 C C20 RET . . . D 3 -17.076 -19.511 -1.283 1 2.96 ? C20 RET 303 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#