data_7CS8 # _model_server_result.job_id eC6JMNfY0efAMqZYqGtzbQ _model_server_result.datetime_utc '2024-10-19 11:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7CS8 # _exptl.entry_id 7CS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CS8 _cell.length_a 244.363 _cell.length_b 244.363 _cell.length_c 76.029 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,S 1 1 C,K,L,U 1 2 B,F,I,J,Q,R,T,X 2 1 D,E,M,N,O,P,V,W 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -122.1815 211.624566 25.343 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C20 H26 O6' _chem_comp.formula_weight 362.417 _chem_comp.id GO6 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (-)-secoisolariciresinol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O03 GO6 sing 129 n n O03 C19 GO6 sing 130 n n O05 C23 GO6 sing 131 n n C19 C23 GO6 doub 132 n y C19 C15 GO6 sing 133 n y C23 C21 GO6 sing 134 n y C15 C13 GO6 doub 135 n y C21 C17 GO6 doub 136 n y C13 C17 GO6 sing 137 n y C13 C09 GO6 sing 138 n n C11 O01 GO6 sing 139 n n C11 C07 GO6 sing 140 n n C09 C07 GO6 sing 141 n n C07 C08 GO6 sing 142 n n C10 C08 GO6 sing 143 n n C10 C14 GO6 sing 144 n n C18 C14 GO6 doub 145 n y C18 C22 GO6 sing 146 n y C08 C12 GO6 sing 147 n n C14 C16 GO6 sing 148 n y C22 C24 GO6 doub 149 n y C16 C20 GO6 doub 150 n y C24 C20 GO6 sing 151 n y C24 O06 GO6 sing 152 n n C20 O04 GO6 sing 153 n n C12 O02 GO6 sing 154 n n O04 C26 GO6 sing 155 n n C10 H102 GO6 sing 156 n n C10 H101 GO6 sing 157 n n C15 H151 GO6 sing 158 n n C17 H171 GO6 sing 159 n n C21 H211 GO6 sing 160 n n C22 H221 GO6 sing 161 n n C26 H262 GO6 sing 162 n n C26 H261 GO6 sing 163 n n C26 H263 GO6 sing 164 n n O01 H011 GO6 sing 165 n n O02 H021 GO6 sing 166 n n O05 H051 GO6 sing 167 n n O06 H061 GO6 sing 168 n n C07 H071 GO6 sing 169 n n C08 H081 GO6 sing 170 n n C09 H092 GO6 sing 171 n n C09 H091 GO6 sing 172 n n C11 H111 GO6 sing 173 n n C11 H112 GO6 sing 174 n n C12 H121 GO6 sing 175 n n C12 H122 GO6 sing 176 n n C16 H161 GO6 sing 177 n n C18 H181 GO6 sing 178 n n C25 H253 GO6 sing 179 n n C25 H251 GO6 sing 180 n n C25 H252 GO6 sing 181 n n # _atom_sites.entry_id 7CS8 _atom_sites.fract_transf_matrix[1][1] 0.004092 _atom_sites.fract_transf_matrix[1][2] 0.002363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GO6 A 1 401 319 GO6 LIG . H 3 NDP A 1 402 318 NDP NDP . I 2 GO6 B 1 401 319 GO6 LIG . J 3 NDP B 1 402 318 NDP NDP . K 2 GO6 C 1 401 319 GO6 LIG . L 3 NDP C 1 402 318 NDP NDP . M 2 GO6 D 1 401 319 GO6 LIG . N 3 NDP D 1 402 318 NDP NDP . O 2 GO6 E 1 401 319 GO6 LIG . P 3 NDP E 1 402 318 NDP NDP . Q 2 GO6 F 1 401 319 GO6 LIG . R 3 NDP F 1 402 318 NDP NDP . S 4 HOH A 1 501 21 HOH HOH . S 4 HOH A 2 502 72 HOH HOH . S 4 HOH A 3 503 58 HOH HOH . S 4 HOH A 4 504 67 HOH HOH . S 4 HOH A 5 505 87 HOH HOH . S 4 HOH A 6 506 66 HOH HOH . S 4 HOH A 7 507 43 HOH HOH . T 4 HOH B 1 501 28 HOH HOH . T 4 HOH B 2 502 78 HOH HOH . T 4 HOH B 3 503 55 HOH HOH . T 4 HOH B 4 504 31 HOH HOH . T 4 HOH B 5 505 79 HOH HOH . T 4 HOH B 6 506 5 HOH HOH . T 4 HOH B 7 507 3 HOH HOH . T 4 HOH B 8 508 35 HOH HOH . T 4 HOH B 9 509 70 HOH HOH . T 4 HOH B 10 510 97 HOH HOH . T 4 HOH B 11 511 23 HOH HOH . T 4 HOH B 12 512 38 HOH HOH . T 4 HOH B 13 513 11 HOH HOH . T 4 HOH B 14 514 18 HOH HOH . T 4 HOH B 15 515 57 HOH HOH . T 4 HOH B 16 516 88 HOH HOH . T 4 HOH B 17 517 48 HOH HOH . T 4 HOH B 18 518 22 HOH HOH . T 4 HOH B 19 519 30 HOH HOH . T 4 HOH B 20 520 46 HOH HOH . T 4 HOH B 21 521 84 HOH HOH . T 4 HOH B 22 522 4 HOH HOH . T 4 HOH B 23 523 37 HOH HOH . T 4 HOH B 24 524 89 HOH HOH . U 4 HOH C 1 501 77 HOH HOH . U 4 HOH C 2 502 90 HOH HOH . U 4 HOH C 3 503 20 HOH HOH . U 4 HOH C 4 504 83 HOH HOH . U 4 HOH C 5 505 40 HOH HOH . U 4 HOH C 6 506 49 HOH HOH . U 4 HOH C 7 507 27 HOH HOH . U 4 HOH C 8 508 6 HOH HOH . U 4 HOH C 9 509 91 HOH HOH . U 4 HOH C 10 510 96 HOH HOH . U 4 HOH C 11 511 1 HOH HOH . U 4 HOH C 12 512 76 HOH HOH . V 4 HOH D 1 501 29 HOH HOH . V 4 HOH D 2 502 47 HOH HOH . V 4 HOH D 3 503 92 HOH HOH . V 4 HOH D 4 504 14 HOH HOH . V 4 HOH D 5 505 64 HOH HOH . V 4 HOH D 6 506 60 HOH HOH . V 4 HOH D 7 507 56 HOH HOH . V 4 HOH D 8 508 95 HOH HOH . V 4 HOH D 9 509 94 HOH HOH . V 4 HOH D 10 510 15 HOH HOH . V 4 HOH D 11 511 45 HOH HOH . V 4 HOH D 12 512 68 HOH HOH . V 4 HOH D 13 513 42 HOH HOH . W 4 HOH E 1 501 73 HOH HOH . W 4 HOH E 2 502 71 HOH HOH . W 4 HOH E 3 503 59 HOH HOH . W 4 HOH E 4 504 80 HOH HOH . W 4 HOH E 5 505 24 HOH HOH . W 4 HOH E 6 506 25 HOH HOH . W 4 HOH E 7 507 52 HOH HOH . W 4 HOH E 8 508 93 HOH HOH . W 4 HOH E 9 509 39 HOH HOH . W 4 HOH E 10 510 62 HOH HOH . W 4 HOH E 11 511 26 HOH HOH . W 4 HOH E 12 512 85 HOH HOH . W 4 HOH E 13 513 82 HOH HOH . X 4 HOH F 1 501 34 HOH HOH . X 4 HOH F 2 502 63 HOH HOH . X 4 HOH F 3 503 36 HOH HOH . X 4 HOH F 4 504 13 HOH HOH . X 4 HOH F 5 505 17 HOH HOH . X 4 HOH F 6 506 16 HOH HOH . X 4 HOH F 7 507 75 HOH HOH . X 4 HOH F 8 508 50 HOH HOH . X 4 HOH F 9 509 51 HOH HOH . X 4 HOH F 10 510 41 HOH HOH . X 4 HOH F 11 511 12 HOH HOH . X 4 HOH F 12 512 61 HOH HOH . X 4 HOH F 13 513 65 HOH HOH . X 4 HOH F 14 514 33 HOH HOH . X 4 HOH F 15 515 7 HOH HOH . X 4 HOH F 16 516 2 HOH HOH . X 4 HOH F 17 517 8 HOH HOH . X 4 HOH F 18 518 10 HOH HOH . X 4 HOH F 19 519 53 HOH HOH . X 4 HOH F 20 520 9 HOH HOH . X 4 HOH F 21 521 44 HOH HOH . X 4 HOH F 22 522 19 HOH HOH . X 4 HOH F 23 523 74 HOH HOH . X 4 HOH F 24 524 32 HOH HOH . X 4 HOH F 25 525 86 HOH HOH . X 4 HOH F 26 526 81 HOH HOH . X 4 HOH F 27 527 54 HOH HOH . X 4 HOH F 28 528 69 HOH HOH . X 4 HOH F 29 529 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GO6 . . . G 2 -97.878 124.749 -21.432 1 45.21 ? C10 GO6 401 A 1 HETATM 2 C C13 GO6 . . . G 2 -95.27 122.108 -23.665 1 44.74 ? C13 GO6 401 A 1 HETATM 3 C C15 GO6 . . . G 2 -95.903 121.15 -24.428 1 44.45 ? C15 GO6 401 A 1 HETATM 4 C C17 GO6 . . . G 2 -93.897 122.105 -23.541 1 44.87 ? C17 GO6 401 A 1 HETATM 5 C C20 GO6 . . . G 2 -100.627 126.821 -19.838 1 45.53 ? C20 GO6 401 A 1 HETATM 6 C C21 GO6 . . . G 2 -93.169 121.133 -24.212 1 44.7 ? C21 GO6 401 A 1 HETATM 7 C C22 GO6 . . . G 2 -98.949 128.315 -20.624 1 45.86 ? C22 GO6 401 A 1 HETATM 8 C C24 GO6 . . . G 2 -100.164 128.099 -20.005 1 45.79 ? C24 GO6 401 A 1 HETATM 9 C C26 GO6 . . . G 2 -101.896 125.7 -18.188 1 54.59 ? C26 GO6 401 A 1 HETATM 10 O O01 GO6 . . . G 2 -94.037 126.064 -22.516 1 45.68 ? O01 GO6 401 A 1 HETATM 11 O O02 GO6 . . . G 2 -94.921 123.785 -19.363 1 45.52 ? O02 GO6 401 A 1 HETATM 12 O O03 GO6 . . . G 2 -95.788 119.203 -25.883 1 44.01 ? O03 GO6 401 A 1 HETATM 13 O O04 GO6 . . . G 2 -101.86 126.642 -19.22 1 45.47 ? O04 GO6 401 A 1 HETATM 14 O O05 GO6 . . . G 2 -93.105 119.192 -25.679 1 44.25 ? O05 GO6 401 A 1 HETATM 15 O O06 GO6 . . . G 2 -100.929 129.166 -19.552 1 45.97 ? O06 GO6 401 A 1 HETATM 16 C C07 GO6 . . . G 2 -95.47 124.161 -22.134 1 45.24 ? C07 GO6 401 A 1 HETATM 17 C C08 GO6 . . . G 2 -96.39 124.775 -21.049 1 45.39 ? C08 GO6 401 A 1 HETATM 18 C C09 GO6 . . . G 2 -96.184 123.105 -22.962 1 44.91 ? C09 GO6 401 A 1 HETATM 19 C C11 GO6 . . . G 2 -95.025 125.254 -23.098 1 45.38 ? C11 GO6 401 A 1 HETATM 20 C C12 GO6 . . . G 2 -96.254 124.061 -19.689 1 46.34 ? C12 GO6 401 A 1 HETATM 21 C C14 GO6 . . . G 2 -98.67 125.948 -20.914 1 45.42 ? C14 GO6 401 A 1 HETATM 22 C C16 GO6 . . . G 2 -99.893 125.745 -20.295 1 45.35 ? C16 GO6 401 A 1 HETATM 23 C C18 GO6 . . . G 2 -98.199 127.237 -21.088 1 45.68 ? C18 GO6 401 A 1 HETATM 24 C C19 GO6 . . . G 2 -95.186 120.197 -25.095 1 44.29 ? C19 GO6 401 A 1 HETATM 25 C C23 GO6 . . . G 2 -93.819 120.184 -24.989 1 44.41 ? C23 GO6 401 A 1 HETATM 26 C C25 GO6 . . . G 2 -97.118 119.292 -26.314 1 43.87 ? C25 GO6 401 A 1 HETATM 27 H H102 GO6 . . . G 2 -98.275 123.939 -21.074 1 54.26 ? H102 GO6 401 A 1 HETATM 28 H H101 GO6 . . . G 2 -97.948 124.727 -22.399 1 54.26 ? H101 GO6 401 A 1 HETATM 29 H H151 GO6 . . . G 2 -96.831 121.157 -24.497 1 53.34 ? H151 GO6 401 A 1 HETATM 30 H H171 GO6 . . . G 2 -93.466 122.746 -23.022 1 53.85 ? H171 GO6 401 A 1 HETATM 31 H H211 GO6 . . . G 2 -92.241 121.124 -24.149 1 53.64 ? H211 GO6 401 A 1 HETATM 32 H H221 GO6 . . . G 2 -98.634 129.182 -20.737 1 55.03 ? H221 GO6 401 A 1 HETATM 33 H H262 GO6 . . . G 2 -102.242 126.115 -17.383 1 65.51 ? H262 GO6 401 A 1 HETATM 34 H H261 GO6 . . . G 2 -101 125.368 -18.022 1 65.51 ? H261 GO6 401 A 1 HETATM 35 H H263 GO6 . . . G 2 -102.471 124.962 -18.444 1 65.51 ? H263 GO6 401 A 1 HETATM 36 H H011 GO6 . . . G 2 -93.286 125.667 -22.554 1 54.81 ? H011 GO6 401 A 1 HETATM 37 H H021 GO6 . . . G 2 -94.547 124.493 -19.077 1 54.62 ? H021 GO6 401 A 1 HETATM 38 H H051 GO6 . . . G 2 -93.192 118.448 -25.277 1 53.1 ? H051 GO6 401 A 1 HETATM 39 H H061 GO6 . . . G 2 -100.645 129.416 -18.791 1 55.17 ? H061 GO6 401 A 1 HETATM 40 H H071 GO6 . . . G 2 -94.69 123.767 -21.711 1 54.29 ? H071 GO6 401 A 1 HETATM 41 H H081 GO6 . . . G 2 -96.129 125.701 -20.928 1 54.47 ? H081 GO6 401 A 1 HETATM 42 H H092 GO6 . . . G 2 -96.78 122.612 -22.377 1 53.89 ? H092 GO6 401 A 1 HETATM 43 H H091 GO6 . . . G 2 -96.719 123.556 -23.634 1 53.89 ? H091 GO6 401 A 1 HETATM 44 H H111 GO6 . . . G 2 -94.669 124.844 -23.902 1 54.45 ? H111 GO6 401 A 1 HETATM 45 H H112 GO6 . . . G 2 -95.79 125.803 -23.332 1 54.45 ? H112 GO6 401 A 1 HETATM 46 H H121 GO6 . . . G 2 -96.749 123.227 -19.721 1 55.61 ? H121 GO6 401 A 1 HETATM 47 H H122 GO6 . . . G 2 -96.636 124.626 -18.999 1 55.61 ? H122 GO6 401 A 1 HETATM 48 H H161 GO6 . . . G 2 -100.22 124.881 -20.185 1 54.41 ? H161 GO6 401 A 1 HETATM 49 H H181 GO6 . . . G 2 -97.381 127.384 -21.506 1 54.81 ? H181 GO6 401 A 1 HETATM 50 H H253 GO6 . . . G 2 -97.571 118.452 -26.139 1 52.65 ? H253 GO6 401 A 1 HETATM 51 H H251 GO6 . . . G 2 -97.138 119.478 -27.265 1 52.65 ? H251 GO6 401 A 1 HETATM 52 H H252 GO6 . . . G 2 -97.566 120.007 -25.835 1 52.65 ? H252 GO6 401 A 1 # _model_server_stats.io_time_ms 270 _model_server_stats.parse_time_ms 88 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 52 #