data_7CS8 # _model_server_result.job_id aLwl_nr3P_R0nckHGx9kTw _model_server_result.datetime_utc '2024-10-19 11:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7CS8 # _exptl.entry_id 7CS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CS8 _cell.length_a 244.363 _cell.length_b 244.363 _cell.length_c 76.029 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,S 1 1 C,K,L,U 1 2 B,F,I,J,Q,R,T,X 2 1 D,E,M,N,O,P,V,W 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -122.1815 211.624566 25.343 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C20 H26 O6' _chem_comp.formula_weight 362.417 _chem_comp.id GO6 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (-)-secoisolariciresinol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O03 GO6 sing 129 n n O03 C19 GO6 sing 130 n n O05 C23 GO6 sing 131 n n C19 C23 GO6 doub 132 n y C19 C15 GO6 sing 133 n y C23 C21 GO6 sing 134 n y C15 C13 GO6 doub 135 n y C21 C17 GO6 doub 136 n y C13 C17 GO6 sing 137 n y C13 C09 GO6 sing 138 n n C11 O01 GO6 sing 139 n n C11 C07 GO6 sing 140 n n C09 C07 GO6 sing 141 n n C07 C08 GO6 sing 142 n n C10 C08 GO6 sing 143 n n C10 C14 GO6 sing 144 n n C18 C14 GO6 doub 145 n y C18 C22 GO6 sing 146 n y C08 C12 GO6 sing 147 n n C14 C16 GO6 sing 148 n y C22 C24 GO6 doub 149 n y C16 C20 GO6 doub 150 n y C24 C20 GO6 sing 151 n y C24 O06 GO6 sing 152 n n C20 O04 GO6 sing 153 n n C12 O02 GO6 sing 154 n n O04 C26 GO6 sing 155 n n C10 H102 GO6 sing 156 n n C10 H101 GO6 sing 157 n n C15 H151 GO6 sing 158 n n C17 H171 GO6 sing 159 n n C21 H211 GO6 sing 160 n n C22 H221 GO6 sing 161 n n C26 H262 GO6 sing 162 n n C26 H261 GO6 sing 163 n n C26 H263 GO6 sing 164 n n O01 H011 GO6 sing 165 n n O02 H021 GO6 sing 166 n n O05 H051 GO6 sing 167 n n O06 H061 GO6 sing 168 n n C07 H071 GO6 sing 169 n n C08 H081 GO6 sing 170 n n C09 H092 GO6 sing 171 n n C09 H091 GO6 sing 172 n n C11 H111 GO6 sing 173 n n C11 H112 GO6 sing 174 n n C12 H121 GO6 sing 175 n n C12 H122 GO6 sing 176 n n C16 H161 GO6 sing 177 n n C18 H181 GO6 sing 178 n n C25 H253 GO6 sing 179 n n C25 H251 GO6 sing 180 n n C25 H252 GO6 sing 181 n n # _atom_sites.entry_id 7CS8 _atom_sites.fract_transf_matrix[1][1] 0.004092 _atom_sites.fract_transf_matrix[1][2] 0.002363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GO6 A 1 401 319 GO6 LIG . H 3 NDP A 1 402 318 NDP NDP . I 2 GO6 B 1 401 319 GO6 LIG . J 3 NDP B 1 402 318 NDP NDP . K 2 GO6 C 1 401 319 GO6 LIG . L 3 NDP C 1 402 318 NDP NDP . M 2 GO6 D 1 401 319 GO6 LIG . N 3 NDP D 1 402 318 NDP NDP . O 2 GO6 E 1 401 319 GO6 LIG . P 3 NDP E 1 402 318 NDP NDP . Q 2 GO6 F 1 401 319 GO6 LIG . R 3 NDP F 1 402 318 NDP NDP . S 4 HOH A 1 501 21 HOH HOH . S 4 HOH A 2 502 72 HOH HOH . S 4 HOH A 3 503 58 HOH HOH . S 4 HOH A 4 504 67 HOH HOH . S 4 HOH A 5 505 87 HOH HOH . S 4 HOH A 6 506 66 HOH HOH . S 4 HOH A 7 507 43 HOH HOH . T 4 HOH B 1 501 28 HOH HOH . T 4 HOH B 2 502 78 HOH HOH . T 4 HOH B 3 503 55 HOH HOH . T 4 HOH B 4 504 31 HOH HOH . T 4 HOH B 5 505 79 HOH HOH . T 4 HOH B 6 506 5 HOH HOH . T 4 HOH B 7 507 3 HOH HOH . T 4 HOH B 8 508 35 HOH HOH . T 4 HOH B 9 509 70 HOH HOH . T 4 HOH B 10 510 97 HOH HOH . T 4 HOH B 11 511 23 HOH HOH . T 4 HOH B 12 512 38 HOH HOH . T 4 HOH B 13 513 11 HOH HOH . T 4 HOH B 14 514 18 HOH HOH . T 4 HOH B 15 515 57 HOH HOH . T 4 HOH B 16 516 88 HOH HOH . T 4 HOH B 17 517 48 HOH HOH . T 4 HOH B 18 518 22 HOH HOH . T 4 HOH B 19 519 30 HOH HOH . T 4 HOH B 20 520 46 HOH HOH . T 4 HOH B 21 521 84 HOH HOH . T 4 HOH B 22 522 4 HOH HOH . T 4 HOH B 23 523 37 HOH HOH . T 4 HOH B 24 524 89 HOH HOH . U 4 HOH C 1 501 77 HOH HOH . U 4 HOH C 2 502 90 HOH HOH . U 4 HOH C 3 503 20 HOH HOH . U 4 HOH C 4 504 83 HOH HOH . U 4 HOH C 5 505 40 HOH HOH . U 4 HOH C 6 506 49 HOH HOH . U 4 HOH C 7 507 27 HOH HOH . U 4 HOH C 8 508 6 HOH HOH . U 4 HOH C 9 509 91 HOH HOH . U 4 HOH C 10 510 96 HOH HOH . U 4 HOH C 11 511 1 HOH HOH . U 4 HOH C 12 512 76 HOH HOH . V 4 HOH D 1 501 29 HOH HOH . V 4 HOH D 2 502 47 HOH HOH . V 4 HOH D 3 503 92 HOH HOH . V 4 HOH D 4 504 14 HOH HOH . V 4 HOH D 5 505 64 HOH HOH . V 4 HOH D 6 506 60 HOH HOH . V 4 HOH D 7 507 56 HOH HOH . V 4 HOH D 8 508 95 HOH HOH . V 4 HOH D 9 509 94 HOH HOH . V 4 HOH D 10 510 15 HOH HOH . V 4 HOH D 11 511 45 HOH HOH . V 4 HOH D 12 512 68 HOH HOH . V 4 HOH D 13 513 42 HOH HOH . W 4 HOH E 1 501 73 HOH HOH . W 4 HOH E 2 502 71 HOH HOH . W 4 HOH E 3 503 59 HOH HOH . W 4 HOH E 4 504 80 HOH HOH . W 4 HOH E 5 505 24 HOH HOH . W 4 HOH E 6 506 25 HOH HOH . W 4 HOH E 7 507 52 HOH HOH . W 4 HOH E 8 508 93 HOH HOH . W 4 HOH E 9 509 39 HOH HOH . W 4 HOH E 10 510 62 HOH HOH . W 4 HOH E 11 511 26 HOH HOH . W 4 HOH E 12 512 85 HOH HOH . W 4 HOH E 13 513 82 HOH HOH . X 4 HOH F 1 501 34 HOH HOH . X 4 HOH F 2 502 63 HOH HOH . X 4 HOH F 3 503 36 HOH HOH . X 4 HOH F 4 504 13 HOH HOH . X 4 HOH F 5 505 17 HOH HOH . X 4 HOH F 6 506 16 HOH HOH . X 4 HOH F 7 507 75 HOH HOH . X 4 HOH F 8 508 50 HOH HOH . X 4 HOH F 9 509 51 HOH HOH . X 4 HOH F 10 510 41 HOH HOH . X 4 HOH F 11 511 12 HOH HOH . X 4 HOH F 12 512 61 HOH HOH . X 4 HOH F 13 513 65 HOH HOH . X 4 HOH F 14 514 33 HOH HOH . X 4 HOH F 15 515 7 HOH HOH . X 4 HOH F 16 516 2 HOH HOH . X 4 HOH F 17 517 8 HOH HOH . X 4 HOH F 18 518 10 HOH HOH . X 4 HOH F 19 519 53 HOH HOH . X 4 HOH F 20 520 9 HOH HOH . X 4 HOH F 21 521 44 HOH HOH . X 4 HOH F 22 522 19 HOH HOH . X 4 HOH F 23 523 74 HOH HOH . X 4 HOH F 24 524 32 HOH HOH . X 4 HOH F 25 525 86 HOH HOH . X 4 HOH F 26 526 81 HOH HOH . X 4 HOH F 27 527 54 HOH HOH . X 4 HOH F 28 528 69 HOH HOH . X 4 HOH F 29 529 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GO6 . . . I 2 -35.815 54.443 33.818 1 36.09 ? C10 GO6 401 B 1 HETATM 2 C C13 GO6 . . . I 2 -38.23 51.518 35.976 1 36 ? C13 GO6 401 B 1 HETATM 3 C C15 GO6 . . . I 2 -37.791 51.311 37.282 1 35.97 ? C15 GO6 401 B 1 HETATM 4 C C17 GO6 . . . I 2 -39.452 50.979 35.589 1 36.05 ? C17 GO6 401 B 1 HETATM 5 C C20 GO6 . . . I 2 -33.537 56.696 31.731 1 36.14 ? C20 GO6 401 B 1 HETATM 6 C C21 GO6 . . . I 2 -40.212 50.238 36.498 1 36.08 ? C21 GO6 401 B 1 HETATM 7 C C22 GO6 . . . I 2 -35.439 57.971 32.417 1 36.61 ? C22 GO6 401 B 1 HETATM 8 C C24 GO6 . . . I 2 -34.235 57.883 31.737 1 36.43 ? C24 GO6 401 B 1 HETATM 9 C C26 GO6 . . . I 2 -31.218 56.242 31.774 1 35.8 ? C26 GO6 401 B 1 HETATM 10 O O01 GO6 . . . I 2 -39.809 54.992 34.024 1 36.67 ? O01 GO6 401 B 1 HETATM 11 O O02 GO6 . . . I 2 -37.796 52.416 31.359 1 35.9 ? O02 GO6 401 B 1 HETATM 12 O O03 GO6 . . . I 2 -38.113 50.371 39.51 1 35.97 ? O03 GO6 401 B 1 HETATM 13 O O04 GO6 . . . I 2 -32.337 56.637 31.03 1 35.97 ? O04 GO6 401 B 1 HETATM 14 O O05 GO6 . . . I 2 -40.519 49.3 38.702 1 36.08 ? O05 GO6 401 B 1 HETATM 15 O O06 GO6 . . . I 2 -33.717 58.983 31.051 1 38.46 ? O06 GO6 401 B 1 HETATM 16 C C07 GO6 . . . I 2 -38.087 53.259 34.06 1 36.18 ? C07 GO6 401 B 1 HETATM 17 C C08 GO6 . . . I 2 -37.09 53.949 33.099 1 36.13 ? C08 GO6 401 B 1 HETATM 18 C C09 GO6 . . . I 2 -37.336 52.339 35.034 1 35.98 ? C09 GO6 401 B 1 HETATM 19 C C11 GO6 . . . I 2 -38.9 54.306 34.84 1 36.49 ? C11 GO6 401 B 1 HETATM 20 C C12 GO6 . . . I 2 -36.677 53.012 31.952 1 35.88 ? C12 GO6 401 B 1 HETATM 21 C C14 GO6 . . . I 2 -35.243 55.665 33.079 1 36.21 ? C14 GO6 401 B 1 HETATM 22 C C16 GO6 . . . I 2 -34.035 55.586 32.389 1 36.03 ? C16 GO6 401 B 1 HETATM 23 C C18 GO6 . . . I 2 -35.94 56.863 33.08 1 36.5 ? C18 GO6 401 B 1 HETATM 24 C C19 GO6 . . . I 2 -38.54 50.573 38.185 1 35.99 ? C19 GO6 401 B 1 HETATM 25 C C23 GO6 . . . I 2 -39.755 50.043 37.793 1 36.05 ? C23 GO6 401 B 1 HETATM 26 C C25 GO6 . . . I 2 -36.751 50.359 39.832 1 35.8 ? C25 GO6 401 B 1 HETATM 27 H H102 GO6 . . . I 2 -35.154 53.734 33.826 1 43.31 ? H102 GO6 401 B 1 HETATM 28 H H101 GO6 . . . I 2 -36.034 54.691 34.73 1 43.31 ? H101 GO6 401 B 1 HETATM 29 H H151 GO6 . . . I 2 -36.977 51.671 37.552 1 43.16 ? H151 GO6 401 B 1 HETATM 30 H H171 GO6 . . . I 2 -39.759 51.102 34.72 1 43.26 ? H171 GO6 401 B 1 HETATM 31 H H211 GO6 . . . I 2 -41.026 49.875 36.234 1 43.29 ? H211 GO6 401 B 1 HETATM 32 H H221 GO6 . . . I 2 -35.912 58.771 32.423 1 43.94 ? H221 GO6 401 B 1 HETATM 33 H H262 GO6 . . . I 2 -30.797 55.48 31.345 1 42.96 ? H262 GO6 401 B 1 HETATM 34 H H261 GO6 . . . I 2 -31.496 55.996 32.67 1 42.96 ? H261 GO6 401 B 1 HETATM 35 H H263 GO6 . . . I 2 -30.586 56.976 31.821 1 42.96 ? H263 GO6 401 B 1 HETATM 36 H H011 GO6 . . . I 2 -40.532 54.548 33.97 1 44.01 ? H011 GO6 401 B 1 HETATM 37 H H021 GO6 . . . I 2 -38.13 52.949 30.787 1 43.08 ? H021 GO6 401 B 1 HETATM 38 H H051 GO6 . . . I 2 -40.243 48.496 38.714 1 43.3 ? H051 GO6 401 B 1 HETATM 39 H H061 GO6 . . . I 2 -33.927 58.929 30.229 1 46.15 ? H061 GO6 401 B 1 HETATM 40 H H071 GO6 . . . I 2 -38.7 52.72 33.535 1 43.42 ? H071 GO6 401 B 1 HETATM 41 H H081 GO6 . . . I 2 -37.534 54.72 32.712 1 43.36 ? H081 GO6 401 B 1 HETATM 42 H H092 GO6 . . . I 2 -36.795 51.724 34.515 1 43.17 ? H092 GO6 401 B 1 HETATM 43 H H091 GO6 . . . I 2 -36.745 52.886 35.575 1 43.17 ? H091 GO6 401 B 1 HETATM 44 H H111 GO6 . . . I 2 -39.39 53.859 35.549 1 43.79 ? H111 GO6 401 B 1 HETATM 45 H H112 GO6 . . . I 2 -38.289 54.946 35.237 1 43.79 ? H112 GO6 401 B 1 HETATM 46 H H121 GO6 . . . I 2 -36.096 52.318 32.302 1 43.06 ? H121 GO6 401 B 1 HETATM 47 H H122 GO6 . . . I 2 -36.195 53.522 31.282 1 43.06 ? H122 GO6 401 B 1 HETATM 48 H H161 GO6 . . . I 2 -33.559 54.787 32.378 1 43.23 ? H161 GO6 401 B 1 HETATM 49 H H181 GO6 . . . I 2 -36.748 56.927 33.537 1 43.8 ? H181 GO6 401 B 1 HETATM 50 H H253 GO6 . . . I 2 -36.557 49.587 40.387 1 42.96 ? H253 GO6 401 B 1 HETATM 51 H H251 GO6 . . . I 2 -36.526 51.169 40.316 1 42.96 ? H251 GO6 401 B 1 HETATM 52 H H252 GO6 . . . I 2 -36.227 50.312 39.018 1 42.96 ? H252 GO6 401 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #