data_7CS8
#
_model_server_result.job_id            WjnvMQxQT3ltDOBH33vvHg 
_model_server_result.datetime_utc      '2024-10-19 11:40:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cs8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":401}' 
#
_entry.id    7CS8 
#
_exptl.entry_id    7CS8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              362.417 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7CS8 
_cell.length_a            244.363 
_cell.length_b            244.363 
_cell.length_c            76.029 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CS8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    'P 61' 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,S 1 1 
C,K,L,U 1 2 
B,F,I,J,Q,R,T,X 2 1 
D,E,M,N,O,P,V,W 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -122.1815 211.624566 25.343 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C20 H26 O6' 
_chem_comp.formula_weight    362.417 
_chem_comp.id                GO6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (-)-secoisolariciresinol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 O03 GO6 sing 129 n n 
O03 C19 GO6 sing 130 n n 
O05 C23 GO6 sing 131 n n 
C19 C23 GO6 doub 132 n y 
C19 C15 GO6 sing 133 n y 
C23 C21 GO6 sing 134 n y 
C15 C13 GO6 doub 135 n y 
C21 C17 GO6 doub 136 n y 
C13 C17 GO6 sing 137 n y 
C13 C09 GO6 sing 138 n n 
C11 O01 GO6 sing 139 n n 
C11 C07 GO6 sing 140 n n 
C09 C07 GO6 sing 141 n n 
C07 C08 GO6 sing 142 n n 
C10 C08 GO6 sing 143 n n 
C10 C14 GO6 sing 144 n n 
C18 C14 GO6 doub 145 n y 
C18 C22 GO6 sing 146 n y 
C08 C12 GO6 sing 147 n n 
C14 C16 GO6 sing 148 n y 
C22 C24 GO6 doub 149 n y 
C16 C20 GO6 doub 150 n y 
C24 C20 GO6 sing 151 n y 
C24 O06 GO6 sing 152 n n 
C20 O04 GO6 sing 153 n n 
C12 O02 GO6 sing 154 n n 
O04 C26 GO6 sing 155 n n 
C10 H102 GO6 sing 156 n n 
C10 H101 GO6 sing 157 n n 
C15 H151 GO6 sing 158 n n 
C17 H171 GO6 sing 159 n n 
C21 H211 GO6 sing 160 n n 
C22 H221 GO6 sing 161 n n 
C26 H262 GO6 sing 162 n n 
C26 H261 GO6 sing 163 n n 
C26 H263 GO6 sing 164 n n 
O01 H011 GO6 sing 165 n n 
O02 H021 GO6 sing 166 n n 
O05 H051 GO6 sing 167 n n 
O06 H061 GO6 sing 168 n n 
C07 H071 GO6 sing 169 n n 
C08 H081 GO6 sing 170 n n 
C09 H092 GO6 sing 171 n n 
C09 H091 GO6 sing 172 n n 
C11 H111 GO6 sing 173 n n 
C11 H112 GO6 sing 174 n n 
C12 H121 GO6 sing 175 n n 
C12 H122 GO6 sing 176 n n 
C16 H161 GO6 sing 177 n n 
C18 H181 GO6 sing 178 n n 
C25 H253 GO6 sing 179 n n 
C25 H251 GO6 sing 180 n n 
C25 H252 GO6 sing 181 n n 
#
_atom_sites.entry_id                     7CS8 
_atom_sites.fract_transf_matrix[1][1]    0.004092 
_atom_sites.fract_transf_matrix[1][2]    0.002363 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013153 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GO6 A 1 401 319 GO6 LIG . 
H 3 NDP A 1 402 318 NDP NDP . 
I 2 GO6 B 1 401 319 GO6 LIG . 
J 3 NDP B 1 402 318 NDP NDP . 
K 2 GO6 C 1 401 319 GO6 LIG . 
L 3 NDP C 1 402 318 NDP NDP . 
M 2 GO6 D 1 401 319 GO6 LIG . 
N 3 NDP D 1 402 318 NDP NDP . 
O 2 GO6 E 1 401 319 GO6 LIG . 
P 3 NDP E 1 402 318 NDP NDP . 
Q 2 GO6 F 1 401 319 GO6 LIG . 
R 3 NDP F 1 402 318 NDP NDP . 
S 4 HOH A 1 501 21 HOH HOH . 
S 4 HOH A 2 502 72 HOH HOH . 
S 4 HOH A 3 503 58 HOH HOH . 
S 4 HOH A 4 504 67 HOH HOH . 
S 4 HOH A 5 505 87 HOH HOH . 
S 4 HOH A 6 506 66 HOH HOH . 
S 4 HOH A 7 507 43 HOH HOH . 
T 4 HOH B 1 501 28 HOH HOH . 
T 4 HOH B 2 502 78 HOH HOH . 
T 4 HOH B 3 503 55 HOH HOH . 
T 4 HOH B 4 504 31 HOH HOH . 
T 4 HOH B 5 505 79 HOH HOH . 
T 4 HOH B 6 506 5 HOH HOH . 
T 4 HOH B 7 507 3 HOH HOH . 
T 4 HOH B 8 508 35 HOH HOH . 
T 4 HOH B 9 509 70 HOH HOH . 
T 4 HOH B 10 510 97 HOH HOH . 
T 4 HOH B 11 511 23 HOH HOH . 
T 4 HOH B 12 512 38 HOH HOH . 
T 4 HOH B 13 513 11 HOH HOH . 
T 4 HOH B 14 514 18 HOH HOH . 
T 4 HOH B 15 515 57 HOH HOH . 
T 4 HOH B 16 516 88 HOH HOH . 
T 4 HOH B 17 517 48 HOH HOH . 
T 4 HOH B 18 518 22 HOH HOH . 
T 4 HOH B 19 519 30 HOH HOH . 
T 4 HOH B 20 520 46 HOH HOH . 
T 4 HOH B 21 521 84 HOH HOH . 
T 4 HOH B 22 522 4 HOH HOH . 
T 4 HOH B 23 523 37 HOH HOH . 
T 4 HOH B 24 524 89 HOH HOH . 
U 4 HOH C 1 501 77 HOH HOH . 
U 4 HOH C 2 502 90 HOH HOH . 
U 4 HOH C 3 503 20 HOH HOH . 
U 4 HOH C 4 504 83 HOH HOH . 
U 4 HOH C 5 505 40 HOH HOH . 
U 4 HOH C 6 506 49 HOH HOH . 
U 4 HOH C 7 507 27 HOH HOH . 
U 4 HOH C 8 508 6 HOH HOH . 
U 4 HOH C 9 509 91 HOH HOH . 
U 4 HOH C 10 510 96 HOH HOH . 
U 4 HOH C 11 511 1 HOH HOH . 
U 4 HOH C 12 512 76 HOH HOH . 
V 4 HOH D 1 501 29 HOH HOH . 
V 4 HOH D 2 502 47 HOH HOH . 
V 4 HOH D 3 503 92 HOH HOH . 
V 4 HOH D 4 504 14 HOH HOH . 
V 4 HOH D 5 505 64 HOH HOH . 
V 4 HOH D 6 506 60 HOH HOH . 
V 4 HOH D 7 507 56 HOH HOH . 
V 4 HOH D 8 508 95 HOH HOH . 
V 4 HOH D 9 509 94 HOH HOH . 
V 4 HOH D 10 510 15 HOH HOH . 
V 4 HOH D 11 511 45 HOH HOH . 
V 4 HOH D 12 512 68 HOH HOH . 
V 4 HOH D 13 513 42 HOH HOH . 
W 4 HOH E 1 501 73 HOH HOH . 
W 4 HOH E 2 502 71 HOH HOH . 
W 4 HOH E 3 503 59 HOH HOH . 
W 4 HOH E 4 504 80 HOH HOH . 
W 4 HOH E 5 505 24 HOH HOH . 
W 4 HOH E 6 506 25 HOH HOH . 
W 4 HOH E 7 507 52 HOH HOH . 
W 4 HOH E 8 508 93 HOH HOH . 
W 4 HOH E 9 509 39 HOH HOH . 
W 4 HOH E 10 510 62 HOH HOH . 
W 4 HOH E 11 511 26 HOH HOH . 
W 4 HOH E 12 512 85 HOH HOH . 
W 4 HOH E 13 513 82 HOH HOH . 
X 4 HOH F 1 501 34 HOH HOH . 
X 4 HOH F 2 502 63 HOH HOH . 
X 4 HOH F 3 503 36 HOH HOH . 
X 4 HOH F 4 504 13 HOH HOH . 
X 4 HOH F 5 505 17 HOH HOH . 
X 4 HOH F 6 506 16 HOH HOH . 
X 4 HOH F 7 507 75 HOH HOH . 
X 4 HOH F 8 508 50 HOH HOH . 
X 4 HOH F 9 509 51 HOH HOH . 
X 4 HOH F 10 510 41 HOH HOH . 
X 4 HOH F 11 511 12 HOH HOH . 
X 4 HOH F 12 512 61 HOH HOH . 
X 4 HOH F 13 513 65 HOH HOH . 
X 4 HOH F 14 514 33 HOH HOH . 
X 4 HOH F 15 515 7 HOH HOH . 
X 4 HOH F 16 516 2 HOH HOH . 
X 4 HOH F 17 517 8 HOH HOH . 
X 4 HOH F 18 518 10 HOH HOH . 
X 4 HOH F 19 519 53 HOH HOH . 
X 4 HOH F 20 520 9 HOH HOH . 
X 4 HOH F 21 521 44 HOH HOH . 
X 4 HOH F 22 522 19 HOH HOH . 
X 4 HOH F 23 523 74 HOH HOH . 
X 4 HOH F 24 524 32 HOH HOH . 
X 4 HOH F 25 525 86 HOH HOH . 
X 4 HOH F 26 526 81 HOH HOH . 
X 4 HOH F 27 527 54 HOH HOH . 
X 4 HOH F 28 528 69 HOH HOH . 
X 4 HOH F 29 529 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 GO6 . . . O 2 -63.291 76.684 -34.552 1 40.28 ? C10 GO6 401 E 1 
HETATM 2 C C13 GO6 . . . O 2 -64.468 72.95 -36.533 1 40.05 ? C13 GO6 401 E 1 
HETATM 3 C C15 GO6 . . . O 2 -65.372 72.951 -37.58 1 40.09 ? C15 GO6 401 E 1 
HETATM 4 C C17 GO6 . . . O 2 -64.012 71.735 -36.046 1 39.95 ? C17 GO6 401 E 1 
HETATM 5 C C20 GO6 . . . O 2 -62.918 79.876 -32.547 1 40.51 ? C20 GO6 401 E 1 
HETATM 6 C C21 GO6 . . . O 2 -64.442 70.546 -36.596 1 39.89 ? C21 GO6 401 E 1 
HETATM 7 C C22 GO6 . . . O 2 -60.735 79.27 -33.337 1 40.54 ? C22 GO6 401 E 1 
HETATM 8 C C24 GO6 . . . O 2 -61.569 80.134 -32.617 1 40.58 ? C24 GO6 401 E 1 
HETATM 9 C C26 GO6 . . . O 2 -63.591 80.705 -30.446 1 41.29 ? C26 GO6 401 E 1 
HETATM 10 O O01 GO6 . . . O 2 -60.485 73.757 -35.164 1 40.12 ? O01 GO6 401 E 1 
HETATM 11 O O02 GO6 . . . O 2 -63.307 73.87 -32.077 1 39.95 ? O02 GO6 401 E 1 
HETATM 12 O O03 GO6 . . . O 2 -66.716 71.716 -39.221 1 40.07 ? O03 GO6 401 E 1 
HETATM 13 O O04 GO6 . . . O 2 -63.725 80.766 -31.839 1 40.56 ? O04 GO6 401 E 1 
HETATM 14 O O05 GO6 . . . O 2 -65.763 69.338 -38.18 1 39.89 ? O05 GO6 401 E 1 
HETATM 15 O O06 GO6 . . . O 2 -61.102 81.291 -31.965 1 40.69 ? O06 GO6 401 E 1 
HETATM 16 C C07 GO6 . . . O 2 -62.844 74.217 -34.969 1 40.1 ? C07 GO6 401 E 1 
HETATM 17 C C08 GO6 . . . O 2 -62.803 75.372 -33.936 1 40.15 ? C08 GO6 401 E 1 
HETATM 18 C C09 GO6 . . . O 2 -64.028 74.303 -35.93 1 40.13 ? C09 GO6 401 E 1 
HETATM 19 C C11 GO6 . . . O 2 -61.601 74.258 -35.843 1 40.17 ? C11 GO6 401 E 1 
HETATM 20 C C12 GO6 . . . O 2 -63.659 75.092 -32.679 1 40.07 ? C12 GO6 401 E 1 
HETATM 21 C C14 GO6 . . . O 2 -62.648 77.893 -33.871 1 40.38 ? C14 GO6 401 E 1 
HETATM 22 C C16 GO6 . . . O 2 -63.464 78.766 -33.171 1 40.41 ? C16 GO6 401 E 1 
HETATM 23 C C18 GO6 . . . O 2 -61.278 78.145 -33.961 1 40.44 ? C18 GO6 401 E 1 
HETATM 24 C C19 GO6 . . . O 2 -65.811 71.755 -38.138 1 40.03 ? C19 GO6 401 E 1 
HETATM 25 C C23 GO6 . . . O 2 -65.339 70.554 -37.64 1 39.94 ? C23 GO6 401 E 1 
HETATM 26 C C25 GO6 . . . O 2 -67.645 72.754 -39.371 1 40.12 ? C25 GO6 401 E 1 
HETATM 27 H H102 GO6 . . . O 2 -64.254 76.74 -34.456 1 48.34 ? H102 GO6 401 E 1 
HETATM 28 H H101 GO6 . . . O 2 -63.065 76.694 -35.495 1 48.34 ? H101 GO6 401 E 1 
HETATM 29 H H151 GO6 . . . O 2 -65.687 73.759 -37.916 1 48.11 ? H151 GO6 401 E 1 
HETATM 30 H H171 GO6 . . . O 2 -63.413 71.722 -35.334 1 47.94 ? H171 GO6 401 E 1 
HETATM 31 H H211 GO6 . . . O 2 -64.129 69.738 -36.258 1 47.87 ? H211 GO6 401 E 1 
HETATM 32 H H221 GO6 . . . O 2 -59.821 79.436 -33.386 1 48.64 ? H221 GO6 401 E 1 
HETATM 33 H H262 GO6 . . . O 2 -63.373 81.586 -30.103 1 49.55 ? H262 GO6 401 E 1 
HETATM 34 H H261 GO6 . . . O 2 -62.881 80.084 -30.217 1 49.55 ? H261 GO6 401 E 1 
HETATM 35 H H263 GO6 . . . O 2 -64.424 80.402 -30.053 1 49.55 ? H263 GO6 401 E 1 
HETATM 36 H H011 GO6 . . . O 2 -60.298 72.982 -35.459 1 48.14 ? H011 GO6 401 E 1 
HETATM 37 H H021 GO6 . . . O 2 -62.518 73.925 -31.765 1 47.93 ? H021 GO6 401 E 1 
HETATM 38 H H051 GO6 . . . O 2 -66.481 69.093 -37.796 1 47.87 ? H051 GO6 401 E 1 
HETATM 39 H H061 GO6 . . . O 2 -60.62 81.067 -31.301 1 48.83 ? H061 GO6 401 E 1 
HETATM 40 H H071 GO6 . . . O 2 -62.875 73.369 -34.499 1 48.13 ? H071 GO6 401 E 1 
HETATM 41 H H081 GO6 . . . O 2 -61.883 75.493 -33.654 1 48.19 ? H081 GO6 401 E 1 
HETATM 42 H H092 GO6 . . . O 2 -64.782 74.686 -35.454 1 48.16 ? H092 GO6 401 E 1 
HETATM 43 H H091 GO6 . . . O 2 -63.79 74.899 -36.657 1 48.16 ? H091 GO6 401 E 1 
HETATM 44 H H111 GO6 . . . O 2 -61.755 73.723 -36.638 1 48.21 ? H111 GO6 401 E 1 
HETATM 45 H H112 GO6 . . . O 2 -61.428 75.175 -36.106 1 48.21 ? H112 GO6 401 E 1 
HETATM 46 H H121 GO6 . . . O 2 -64.594 75.062 -32.933 1 48.08 ? H121 GO6 401 E 1 
HETATM 47 H H122 GO6 . . . O 2 -63.527 75.81 -32.04 1 48.08 ? H122 GO6 401 E 1 
HETATM 48 H H161 GO6 . . . O 2 -64.378 78.604 -33.114 1 48.5 ? H161 GO6 401 E 1 
HETATM 49 H H181 GO6 . . . O 2 -60.727 77.563 -34.434 1 48.53 ? H181 GO6 401 E 1 
HETATM 50 H H253 GO6 . . . O 2 -68.527 72.378 -39.524 1 48.14 ? H253 GO6 401 E 1 
HETATM 51 H H251 GO6 . . . O 2 -67.393 73.307 -40.127 1 48.14 ? H251 GO6 401 E 1 
HETATM 52 H H252 GO6 . . . O 2 -67.659 73.294 -38.565 1 48.14 ? H252 GO6 401 E 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#