data_7CSC # _model_server_result.job_id rRB-EU-q8xjwY3uor0wPuA _model_server_result.datetime_utc '2024-11-05 06:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7csc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 7CSC # _exptl.entry_id 7CSC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3R,3aS,6R,6aS)-6-(3-methoxy-4-oxidanyl-phenyl)-1,3,3a,4,6,6a-hexahydrofuro[3,4-c]furan-3-yl]-2-methoxy-phenol _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.947 _cell.angle_gamma 90 _cell.entry_id 7CSC _cell.length_a 211.015 _cell.length_b 128.712 _cell.length_c 105.323 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C20 H22 O6' _chem_comp.formula_weight 358.385 _chem_comp.id GEF _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3R,3aS,6R,6aS)-6-(3-methoxy-4-oxidanyl-phenyl)-1,3,3a,4,6,6a-hexahydrofuro[3,4-c]furan-3-yl]-2-methoxy-phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (-)-pinoresinol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV OAU GEF sing 83 n n OAU CAQ GEF sing 84 n n CAQ CAP GEF doub 85 n y CAQ CAR GEF sing 86 n y CAP CAO GEF sing 87 n y CAR OAZ GEF sing 88 n n CAR CAS GEF doub 89 n y CAS CAT GEF sing 90 n y CAT CAO GEF doub 91 n y CAO CAN GEF sing 92 n n CAN OAM GEF sing 93 n n CAN CAJ GEF sing 94 n n OAM CAL GEF sing 95 n n CAL CAK GEF sing 96 n n CAK CAJ GEF sing 97 n n CAK CAG GEF sing 98 n n CAJ CAH GEF sing 99 n n CAH OAI GEF sing 100 n n OAI CAG GEF sing 101 n n CAG CAD GEF sing 102 n n CAD CAE GEF doub 103 n y CAD CAC GEF sing 104 n y CAE CAF GEF sing 105 n y CAC CAB GEF doub 106 n y CAB CAA GEF sing 107 n y CAA OAY GEF sing 108 n n CAA CAF GEF doub 109 n y CAF OAW GEF sing 110 n n OAW CAX GEF sing 111 n n CAV H1 GEF sing 112 n n CAV H2 GEF sing 113 n n CAV H3 GEF sing 114 n n CAP H4 GEF sing 115 n n OAZ H5 GEF sing 116 n n CAS H6 GEF sing 117 n n CAT H7 GEF sing 118 n n CAN H8 GEF sing 119 n n CAL H9 GEF sing 120 n n CAL H10 GEF sing 121 n n CAK H11 GEF sing 122 n n CAJ H12 GEF sing 123 n n CAH H13 GEF sing 124 n n CAH H14 GEF sing 125 n n CAG H15 GEF sing 126 n n CAE H16 GEF sing 127 n n CAC H17 GEF sing 128 n n CAB H18 GEF sing 129 n n OAY H19 GEF sing 130 n n CAX H20 GEF sing 131 n n CAX H21 GEF sing 132 n n CAX H22 GEF sing 133 n n # _atom_sites.entry_id 7CSC _atom_sites.fract_transf_matrix[1][1] 0.004739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GEF E 1 401 319 GEF DRG . H 3 NDP E 1 402 318 NDP NDP . I 2 GEF F 1 401 319 GEF DRG . J 3 NDP F 1 402 318 NDP NDP . K 2 GEF A 1 401 319 GEF DRG . L 3 NDP A 1 402 318 NDP NDP . M 2 GEF B 1 401 319 GEF DRG . N 3 NDP B 1 402 318 NDP NDP . O 2 GEF C 1 401 319 GEF DRG . P 3 NDP C 1 402 318 NDP NDP . Q 2 GEF D 1 401 319 GEF DRG . R 3 NDP D 1 402 318 NDP NDP . S 4 HOH E 1 501 161 HOH HOH . S 4 HOH E 2 502 109 HOH HOH . S 4 HOH E 3 503 103 HOH HOH . S 4 HOH E 4 504 156 HOH HOH . S 4 HOH E 5 505 23 HOH HOH . S 4 HOH E 6 506 55 HOH HOH . S 4 HOH E 7 507 64 HOH HOH . S 4 HOH E 8 508 57 HOH HOH . S 4 HOH E 9 509 48 HOH HOH . S 4 HOH E 10 510 6 HOH HOH . S 4 HOH E 11 511 106 HOH HOH . S 4 HOH E 12 512 134 HOH HOH . S 4 HOH E 13 513 135 HOH HOH . S 4 HOH E 14 514 186 HOH HOH . S 4 HOH E 15 515 162 HOH HOH . S 4 HOH E 16 516 88 HOH HOH . S 4 HOH E 17 517 73 HOH HOH . S 4 HOH E 18 518 27 HOH HOH . S 4 HOH E 19 519 82 HOH HOH . S 4 HOH E 20 520 47 HOH HOH . S 4 HOH E 21 521 2 HOH HOH . S 4 HOH E 22 522 171 HOH HOH . S 4 HOH E 23 523 86 HOH HOH . S 4 HOH E 24 524 96 HOH HOH . S 4 HOH E 25 525 81 HOH HOH . S 4 HOH E 26 526 18 HOH HOH . S 4 HOH E 27 527 10 HOH HOH . S 4 HOH E 28 528 187 HOH HOH . S 4 HOH E 29 529 42 HOH HOH . S 4 HOH E 30 530 131 HOH HOH . S 4 HOH E 31 531 60 HOH HOH . S 4 HOH E 32 532 99 HOH HOH . S 4 HOH E 33 533 189 HOH HOH . S 4 HOH E 34 534 160 HOH HOH . S 4 HOH E 35 535 78 HOH HOH . S 4 HOH E 36 536 148 HOH HOH . S 4 HOH E 37 537 24 HOH HOH . S 4 HOH E 38 538 5 HOH HOH . T 4 HOH F 1 501 170 HOH HOH . T 4 HOH F 2 502 193 HOH HOH . T 4 HOH F 3 503 165 HOH HOH . T 4 HOH F 4 504 58 HOH HOH . T 4 HOH F 5 505 80 HOH HOH . T 4 HOH F 6 506 9 HOH HOH . T 4 HOH F 7 507 85 HOH HOH . T 4 HOH F 8 508 4 HOH HOH . T 4 HOH F 9 509 3 HOH HOH . T 4 HOH F 10 510 79 HOH HOH . T 4 HOH F 11 511 128 HOH HOH . T 4 HOH F 12 512 117 HOH HOH . T 4 HOH F 13 513 59 HOH HOH . T 4 HOH F 14 514 15 HOH HOH . T 4 HOH F 15 515 112 HOH HOH . T 4 HOH F 16 516 110 HOH HOH . T 4 HOH F 17 517 7 HOH HOH . T 4 HOH F 18 518 44 HOH HOH . T 4 HOH F 19 519 46 HOH HOH . T 4 HOH F 20 520 13 HOH HOH . T 4 HOH F 21 521 30 HOH HOH . T 4 HOH F 22 522 40 HOH HOH . T 4 HOH F 23 523 133 HOH HOH . T 4 HOH F 24 524 185 HOH HOH . T 4 HOH F 25 525 83 HOH HOH . T 4 HOH F 26 526 166 HOH HOH . T 4 HOH F 27 527 136 HOH HOH . T 4 HOH F 28 528 67 HOH HOH . T 4 HOH F 29 529 188 HOH HOH . T 4 HOH F 30 530 114 HOH HOH . T 4 HOH F 31 531 147 HOH HOH . T 4 HOH F 32 532 21 HOH HOH . T 4 HOH F 33 533 172 HOH HOH . T 4 HOH F 34 534 20 HOH HOH . T 4 HOH F 35 535 164 HOH HOH . T 4 HOH F 36 536 29 HOH HOH . T 4 HOH F 37 537 54 HOH HOH . T 4 HOH F 38 538 34 HOH HOH . T 4 HOH F 39 539 169 HOH HOH . T 4 HOH F 40 540 167 HOH HOH . U 4 HOH A 1 501 159 HOH HOH . U 4 HOH A 2 502 66 HOH HOH . U 4 HOH A 3 503 93 HOH HOH . U 4 HOH A 4 504 77 HOH HOH . U 4 HOH A 5 505 51 HOH HOH . U 4 HOH A 6 506 61 HOH HOH . U 4 HOH A 7 507 17 HOH HOH . U 4 HOH A 8 508 180 HOH HOH . U 4 HOH A 9 509 14 HOH HOH . U 4 HOH A 10 510 152 HOH HOH . U 4 HOH A 11 511 37 HOH HOH . U 4 HOH A 12 512 120 HOH HOH . U 4 HOH A 13 513 145 HOH HOH . U 4 HOH A 14 514 22 HOH HOH . U 4 HOH A 15 515 127 HOH HOH . U 4 HOH A 16 516 87 HOH HOH . U 4 HOH A 17 517 126 HOH HOH . U 4 HOH A 18 518 118 HOH HOH . U 4 HOH A 19 519 19 HOH HOH . U 4 HOH A 20 520 75 HOH HOH . U 4 HOH A 21 521 190 HOH HOH . U 4 HOH A 22 522 28 HOH HOH . U 4 HOH A 23 523 176 HOH HOH . U 4 HOH A 24 524 142 HOH HOH . U 4 HOH A 25 525 25 HOH HOH . U 4 HOH A 26 526 95 HOH HOH . U 4 HOH A 27 527 52 HOH HOH . U 4 HOH A 28 528 122 HOH HOH . U 4 HOH A 29 529 115 HOH HOH . U 4 HOH A 30 530 36 HOH HOH . U 4 HOH A 31 531 70 HOH HOH . U 4 HOH A 32 532 65 HOH HOH . U 4 HOH A 33 533 121 HOH HOH . U 4 HOH A 34 534 39 HOH HOH . U 4 HOH A 35 535 141 HOH HOH . U 4 HOH A 36 536 108 HOH HOH . U 4 HOH A 37 537 191 HOH HOH . U 4 HOH A 38 538 68 HOH HOH . U 4 HOH A 39 539 182 HOH HOH . V 4 HOH B 1 501 35 HOH HOH . V 4 HOH B 2 502 125 HOH HOH . V 4 HOH B 3 503 1 HOH HOH . V 4 HOH B 4 504 56 HOH HOH . V 4 HOH B 5 505 192 HOH HOH . V 4 HOH B 6 506 151 HOH HOH . V 4 HOH B 7 507 32 HOH HOH . V 4 HOH B 8 508 63 HOH HOH . V 4 HOH B 9 509 123 HOH HOH . V 4 HOH B 10 510 140 HOH HOH . V 4 HOH B 11 511 94 HOH HOH . V 4 HOH B 12 512 43 HOH HOH . V 4 HOH B 13 513 116 HOH HOH . V 4 HOH B 14 514 38 HOH HOH . V 4 HOH B 15 515 92 HOH HOH . V 4 HOH B 16 516 124 HOH HOH . V 4 HOH B 17 517 132 HOH HOH . V 4 HOH B 18 518 11 HOH HOH . V 4 HOH B 19 519 113 HOH HOH . V 4 HOH B 20 520 49 HOH HOH . V 4 HOH B 21 521 76 HOH HOH . V 4 HOH B 22 522 158 HOH HOH . V 4 HOH B 23 523 181 HOH HOH . V 4 HOH B 24 524 173 HOH HOH . V 4 HOH B 25 525 72 HOH HOH . V 4 HOH B 26 526 144 HOH HOH . V 4 HOH B 27 527 149 HOH HOH . V 4 HOH B 28 528 139 HOH HOH . W 4 HOH C 1 501 101 HOH HOH . W 4 HOH C 2 502 184 HOH HOH . W 4 HOH C 3 503 183 HOH HOH . W 4 HOH C 4 504 153 HOH HOH . W 4 HOH C 5 505 62 HOH HOH . W 4 HOH C 6 506 168 HOH HOH . W 4 HOH C 7 507 143 HOH HOH . W 4 HOH C 8 508 102 HOH HOH . W 4 HOH C 9 509 137 HOH HOH . W 4 HOH C 10 510 31 HOH HOH . W 4 HOH C 11 511 175 HOH HOH . W 4 HOH C 12 512 138 HOH HOH . W 4 HOH C 13 513 90 HOH HOH . W 4 HOH C 14 514 97 HOH HOH . W 4 HOH C 15 515 12 HOH HOH . W 4 HOH C 16 516 130 HOH HOH . W 4 HOH C 17 517 69 HOH HOH . W 4 HOH C 18 518 150 HOH HOH . W 4 HOH C 19 519 107 HOH HOH . W 4 HOH C 20 520 178 HOH HOH . W 4 HOH C 21 521 154 HOH HOH . W 4 HOH C 22 522 41 HOH HOH . W 4 HOH C 23 523 71 HOH HOH . X 4 HOH D 1 501 174 HOH HOH . X 4 HOH D 2 502 105 HOH HOH . X 4 HOH D 3 503 163 HOH HOH . X 4 HOH D 4 504 45 HOH HOH . X 4 HOH D 5 505 16 HOH HOH . X 4 HOH D 6 506 119 HOH HOH . X 4 HOH D 7 507 157 HOH HOH . X 4 HOH D 8 508 104 HOH HOH . X 4 HOH D 9 509 33 HOH HOH . X 4 HOH D 10 510 100 HOH HOH . X 4 HOH D 11 511 50 HOH HOH . X 4 HOH D 12 512 91 HOH HOH . X 4 HOH D 13 513 8 HOH HOH . X 4 HOH D 14 514 74 HOH HOH . X 4 HOH D 15 515 146 HOH HOH . X 4 HOH D 16 516 129 HOH HOH . X 4 HOH D 17 517 84 HOH HOH . X 4 HOH D 18 518 89 HOH HOH . X 4 HOH D 19 519 111 HOH HOH . X 4 HOH D 20 520 155 HOH HOH . X 4 HOH D 21 521 26 HOH HOH . X 4 HOH D 22 522 177 HOH HOH . X 4 HOH D 23 523 179 HOH HOH . X 4 HOH D 24 524 53 HOH HOH . X 4 HOH D 25 525 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV GEF . . . K 2 -5.753 -22.374 -22.22 1 36.77 ? CAV GEF 401 A 1 HETATM 2 O OAU GEF . . . K 2 -4.574 -22.363 -21.404 1 35.39 ? OAU GEF 401 A 1 HETATM 3 C CAQ GEF . . . K 2 -4.372 -23.613 -20.865 1 37.07 ? CAQ GEF 401 A 1 HETATM 4 C CAP GEF . . . K 2 -5.213 -24.684 -21.054 1 36.52 ? CAP GEF 401 A 1 HETATM 5 C CAR GEF . . . K 2 -3.274 -23.781 -20.056 1 35.31 ? CAR GEF 401 A 1 HETATM 6 O OAZ GEF . . . K 2 -2.478 -22.666 -19.907 1 40.06 ? OAZ GEF 401 A 1 HETATM 7 C CAS GEF . . . K 2 -3.011 -25.03 -19.486 1 34.96 ? CAS GEF 401 A 1 HETATM 8 C CAT GEF . . . K 2 -3.86 -26.124 -19.682 1 34.64 ? CAT GEF 401 A 1 HETATM 9 C CAO GEF . . . K 2 -4.948 -25.953 -20.501 1 36.21 ? CAO GEF 401 A 1 HETATM 10 C CAN GEF . . . K 2 -5.952 -26.869 -20.834 1 36.45 ? CAN GEF 401 A 1 HETATM 11 O OAM GEF . . . K 2 -6.61 -26.803 -19.725 1 40.44 ? OAM GEF 401 A 1 HETATM 12 C CAL GEF . . . K 2 -7.65 -27.664 -19.985 1 37.15 ? CAL GEF 401 A 1 HETATM 13 C CAK GEF . . . K 2 -7.29 -29.05 -20.396 1 36.9 ? CAK GEF 401 A 1 HETATM 14 C CAJ GEF . . . K 2 -5.893 -28.344 -20.095 1 36.67 ? CAJ GEF 401 A 1 HETATM 15 C CAH GEF . . . K 2 -4.658 -29.219 -20.307 1 38.67 ? CAH GEF 401 A 1 HETATM 16 O OAI GEF . . . K 2 -5.143 -29.038 -21.529 1 43.45 ? OAI GEF 401 A 1 HETATM 17 C CAG GEF . . . K 2 -6.516 -29.561 -21.6 1 36.98 ? CAG GEF 401 A 1 HETATM 18 C CAD GEF . . . K 2 -6.561 -30.961 -21.348 1 36.86 ? CAD GEF 401 A 1 HETATM 19 C CAE GEF . . . K 2 -6.784 -31.663 -22.546 1 33.93 ? CAE GEF 401 A 1 HETATM 20 C CAC GEF . . . K 2 -6.504 -31.702 -20.163 1 36.8 ? CAC GEF 401 A 1 HETATM 21 C CAB GEF . . . K 2 -6.596 -33.092 -20.222 1 34.1 ? CAB GEF 401 A 1 HETATM 22 C CAA GEF . . . K 2 -6.782 -33.779 -21.43 1 33.69 ? CAA GEF 401 A 1 HETATM 23 O OAY GEF . . . K 2 -6.879 -35.128 -21.589 1 33.67 ? OAY GEF 401 A 1 HETATM 24 C CAF GEF . . . K 2 -6.864 -33.043 -22.589 1 33.86 ? CAF GEF 401 A 1 HETATM 25 O OAW GEF . . . K 2 -7.051 -33.712 -23.745 1 38.22 ? OAW GEF 401 A 1 HETATM 26 C CAX GEF . . . K 2 -7.162 -32.787 -24.843 1 34.18 ? CAX GEF 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #