data_7CTA # _model_server_result.job_id iQPu0AHvafn0jYNQUZIcNw _model_server_result.datetime_utc '2024-11-15 14:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7CTA # _exptl.entry_id 7CTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.447 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.7 _cell.angle_gamma 90 _cell.entry_id 7CTA _cell.length_a 181.962 _cell.length_b 50.574 _cell.length_c 104.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H22 N6 O7 S' _chem_comp.formula_weight 442.447 _chem_comp.id GEK _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CARBOXY-S-ADENOSYLMETHIONINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O GEK sing 83 n n C CA GEK sing 84 n n C OXT GEK doub 85 n n N CA GEK sing 86 n n N HN GEK sing 87 n n N HNA GEK sing 88 n n N1 C2 GEK doub 89 n y N1 C6 GEK sing 90 n y C2 N3 GEK sing 91 n y C2 H2 GEK sing 92 n n N3 C4 GEK doub 93 n y C4 C5 GEK sing 94 n y C4 N9 GEK sing 95 n y C5 C6 GEK doub 96 n y C5 N7 GEK sing 97 n y C6 N6 GEK sing 98 n n N6 HN6 GEK sing 99 n n N6 HN6A GEK sing 100 n n N7 C8 GEK doub 101 n y C8 N9 GEK sing 102 n y C8 H8 GEK sing 103 n n N9 C1' GEK sing 104 n n CA CB GEK sing 105 n n CA HA GEK sing 106 n n CB CG GEK sing 107 n n CB HB GEK sing 108 n n CB HBA GEK sing 109 n n SD CE GEK sing 110 n n SD CG GEK sing 111 n n SD C5' GEK sing 112 n n CE CZ GEK sing 113 n n CE HE GEK sing 114 n n CE HEA GEK sing 115 n n CG HG GEK sing 116 n n CG HGA GEK sing 117 n n CZ OZ1 GEK doub 118 n n CZ OZ2 GEK sing 119 n n C1' C2' GEK sing 120 n n C1' O4' GEK sing 121 n n C1' H1' GEK sing 122 n n C2' O2' GEK sing 123 n n C2' C3' GEK sing 124 n n C2' H2' GEK sing 125 n n O2' HO2' GEK sing 126 n n C3' O3' GEK sing 127 n n C3' C4' GEK sing 128 n n C3' H3' GEK sing 129 n n O3' HO3' GEK sing 130 n n C4' O4' GEK sing 131 n n C4' C5' GEK sing 132 n n C4' H4' GEK sing 133 n n C5' H5' GEK sing 134 n n C5' "H5'A" GEK sing 135 n n N H22 GEK sing 136 n n # _atom_sites.entry_id 7CTA _atom_sites.fract_transf_matrix[1][1] 0.005496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GEK A 1 401 401 GEK GEK . D 3 SO4 A 1 402 2 SO4 SO4 . E 2 GEK B 1 401 401 GEK GEK . F 3 SO4 B 1 402 1 SO4 SO4 . G 4 HOH A 1 501 23 HOH HOH . G 4 HOH A 2 502 29 HOH HOH . G 4 HOH A 3 503 13 HOH HOH . G 4 HOH A 4 504 39 HOH HOH . G 4 HOH A 5 505 71 HOH HOH . G 4 HOH A 6 506 47 HOH HOH . G 4 HOH A 7 507 4 HOH HOH . G 4 HOH A 8 508 25 HOH HOH . G 4 HOH A 9 509 49 HOH HOH . G 4 HOH A 10 510 26 HOH HOH . G 4 HOH A 11 511 21 HOH HOH . G 4 HOH A 12 512 46 HOH HOH . G 4 HOH A 13 513 50 HOH HOH . G 4 HOH A 14 514 36 HOH HOH . G 4 HOH A 15 515 66 HOH HOH . G 4 HOH A 16 516 85 HOH HOH . G 4 HOH A 17 517 12 HOH HOH . G 4 HOH A 18 518 10 HOH HOH . G 4 HOH A 19 519 31 HOH HOH . G 4 HOH A 20 520 44 HOH HOH . G 4 HOH A 21 521 24 HOH HOH . G 4 HOH A 22 522 28 HOH HOH . G 4 HOH A 23 523 8 HOH HOH . G 4 HOH A 24 524 45 HOH HOH . G 4 HOH A 25 525 38 HOH HOH . G 4 HOH A 26 526 55 HOH HOH . G 4 HOH A 27 527 27 HOH HOH . G 4 HOH A 28 528 16 HOH HOH . G 4 HOH A 29 529 48 HOH HOH . G 4 HOH A 30 530 15 HOH HOH . G 4 HOH A 31 531 14 HOH HOH . G 4 HOH A 32 532 33 HOH HOH . G 4 HOH A 33 533 60 HOH HOH . G 4 HOH A 34 534 42 HOH HOH . G 4 HOH A 35 535 1 HOH HOH . G 4 HOH A 36 536 84 HOH HOH . G 4 HOH A 37 537 80 HOH HOH . G 4 HOH A 38 538 79 HOH HOH . G 4 HOH A 39 539 5 HOH HOH . G 4 HOH A 40 540 62 HOH HOH . G 4 HOH A 41 541 72 HOH HOH . G 4 HOH A 42 542 56 HOH HOH . G 4 HOH A 43 543 51 HOH HOH . G 4 HOH A 44 544 73 HOH HOH . G 4 HOH A 45 545 70 HOH HOH . G 4 HOH A 46 546 59 HOH HOH . G 4 HOH A 47 547 69 HOH HOH . G 4 HOH A 48 548 61 HOH HOH . G 4 HOH A 49 549 65 HOH HOH . H 4 HOH B 1 501 37 HOH HOH . H 4 HOH B 2 502 32 HOH HOH . H 4 HOH B 3 503 78 HOH HOH . H 4 HOH B 4 504 35 HOH HOH . H 4 HOH B 5 505 43 HOH HOH . H 4 HOH B 6 506 11 HOH HOH . H 4 HOH B 7 507 52 HOH HOH . H 4 HOH B 8 508 86 HOH HOH . H 4 HOH B 9 509 6 HOH HOH . H 4 HOH B 10 510 53 HOH HOH . H 4 HOH B 11 511 82 HOH HOH . H 4 HOH B 12 512 7 HOH HOH . H 4 HOH B 13 513 58 HOH HOH . H 4 HOH B 14 514 30 HOH HOH . H 4 HOH B 15 515 34 HOH HOH . H 4 HOH B 16 516 76 HOH HOH . H 4 HOH B 17 517 18 HOH HOH . H 4 HOH B 18 518 20 HOH HOH . H 4 HOH B 19 519 22 HOH HOH . H 4 HOH B 20 520 9 HOH HOH . H 4 HOH B 21 521 40 HOH HOH . H 4 HOH B 22 522 77 HOH HOH . H 4 HOH B 23 523 68 HOH HOH . H 4 HOH B 24 524 74 HOH HOH . H 4 HOH B 25 525 81 HOH HOH . H 4 HOH B 26 526 17 HOH HOH . H 4 HOH B 27 527 41 HOH HOH . H 4 HOH B 28 528 54 HOH HOH . H 4 HOH B 29 529 83 HOH HOH . H 4 HOH B 30 530 3 HOH HOH . H 4 HOH B 31 531 19 HOH HOH . H 4 HOH B 32 532 63 HOH HOH . H 4 HOH B 33 533 57 HOH HOH . H 4 HOH B 34 534 67 HOH HOH . H 4 HOH B 35 535 2 HOH HOH . H 4 HOH B 36 536 75 HOH HOH . H 4 HOH B 37 537 87 HOH HOH . H 4 HOH B 38 538 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GEK . . . E 2 -28.273 -15.1 19.793 1 55.31 ? C GEK 401 B 1 HETATM 2 N N GEK . . . E 2 -27.143 -13.794 17.989 1 56.27 ? N GEK 401 B 1 HETATM 3 O O GEK . . . E 2 -29.127 -16.012 20.058 1 55.68 ? O GEK 401 B 1 HETATM 4 N N1 GEK . . . E 2 -17.819 -13.126 14.32 1 30.09 ? N1 GEK 401 B 1 HETATM 5 C C2 GEK . . . E 2 -19.15 -13.253 14.385 1 29.9 ? C2 GEK 401 B 1 HETATM 6 N N3 GEK . . . E 2 -19.878 -14.196 14.975 1 29.66 ? N3 GEK 401 B 1 HETATM 7 C C4 GEK . . . E 2 -19.091 -15.122 15.539 1 30.14 ? C4 GEK 401 B 1 HETATM 8 C C5 GEK . . . E 2 -17.714 -15.139 15.554 1 29.69 ? C5 GEK 401 B 1 HETATM 9 C C6 GEK . . . E 2 -17.053 -14.07 14.907 1 29.6 ? C6 GEK 401 B 1 HETATM 10 N N6 GEK . . . E 2 -15.736 -13.929 14.814 1 29.83 ? N6 GEK 401 B 1 HETATM 11 N N7 GEK . . . E 2 -17.273 -16.266 16.237 1 28.72 ? N7 GEK 401 B 1 HETATM 12 C C8 GEK . . . E 2 -18.367 -16.893 16.6 1 29.68 ? C8 GEK 401 B 1 HETATM 13 N N9 GEK . . . E 2 -19.507 -16.233 16.216 1 31.54 ? N9 GEK 401 B 1 HETATM 14 C CA GEK . . . E 2 -27.566 -15.164 18.42 1 53.56 ? CA GEK 401 B 1 HETATM 15 C CB GEK . . . E 2 -26.388 -16.158 18.452 1 48.54 ? CB GEK 401 B 1 HETATM 16 S SD GEK . . . E 2 -24.427 -17.439 20.071 1 41.98 ? SD GEK 401 B 1 HETATM 17 C CE GEK . . . E 2 -24.151 -17.005 21.832 1 51.47 ? CE GEK 401 B 1 HETATM 18 C CG GEK . . . E 2 -25.288 -15.914 19.504 1 46.52 ? CG GEK 401 B 1 HETATM 19 C CZ GEK . . . E 2 -25.004 -17.713 22.907 1 51.89 ? CZ GEK 401 B 1 HETATM 20 C C1' GEK . . . E 2 -20.914 -16.611 16.425 1 34.43 ? C1' GEK 401 B 1 HETATM 21 C C2' GEK . . . E 2 -21.129 -18.115 16.484 1 35.76 ? C2' GEK 401 B 1 HETATM 22 O O2' GEK . . . E 2 -20.96 -18.635 15.183 1 32.33 ? O2' GEK 401 B 1 HETATM 23 C C3' GEK . . . E 2 -22.519 -18.179 17.147 1 36.92 ? C3' GEK 401 B 1 HETATM 24 O O3' GEK . . . E 2 -23.639 -18.191 16.271 1 37.55 ? O3' GEK 401 B 1 HETATM 25 C C4' GEK . . . E 2 -22.596 -16.892 17.981 1 36.32 ? C4' GEK 401 B 1 HETATM 26 O O4' GEK . . . E 2 -21.385 -16.153 17.675 1 36.5 ? O4' GEK 401 B 1 HETATM 27 C C5' GEK . . . E 2 -22.729 -17.1 19.48 1 36.78 ? C5' GEK 401 B 1 HETATM 28 O OXT GEK . . . E 2 -27.982 -14.134 20.551 1 53.03 ? OXT GEK 401 B 1 HETATM 29 O OZ1 GEK . . . E 2 -24.359 -18.316 23.809 1 50.94 ? OZ1 GEK 401 B 1 HETATM 30 O OZ2 GEK . . . E 2 -26.265 -17.55 22.899 1 50.18 ? OZ2 GEK 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #