data_7CTV # _model_server_result.job_id HISW9iY1L-exILgAu-jDAg _model_server_result.datetime_utc '2024-12-01 06:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ctv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7CTV # _exptl.entry_id 7CTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.348 _cell.angle_gamma 90 _cell.entry_id 7CTV _cell.length_a 67.57 _cell.length_b 50.889 _cell.length_c 105.416 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 190 A ASN 494 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A OD2 ASP 203 A ASP 507 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 C MG MG . A MG 701 1_555 D O2A ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 C MG MG . A MG 701 1_555 D O2B ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc5 B OD1 ASN 190 B ASN 494 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 B OD1 ASP 203 B ASP 507 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 E MG MG . B MG 701 1_555 F O2A ANP . B ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 E MG MG . B MG 701 1_555 F O2B ANP . B ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7CTV _atom_sites.fract_transf_matrix[1][1] 0.014799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001385 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 701 702 MG MG . D 3 ANP A 1 702 701 ANP ANP . E 2 MG B 1 701 702 MG MG . F 3 ANP B 1 702 701 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 12.877 -11.586 45.794 1 63.27 ? PG ANP 702 A 1 HETATM 2 O O1G ANP . . . D 3 14.179 -10.862 45.48 1 72.87 ? O1G ANP 702 A 1 HETATM 3 O O2G ANP . . . D 3 11.662 -10.683 45.347 1 77.47 ? O2G ANP 702 A 1 HETATM 4 O O3G ANP . . . D 3 12.82 -12.922 45.011 1 82.05 ? O3G ANP 702 A 1 HETATM 5 P PB ANP . . . D 3 14.153 -11.615 48.514 1 74.49 ? PB ANP 702 A 1 HETATM 6 O O1B ANP . . . D 3 13.659 -11.502 49.948 1 73.06 ? O1B ANP 702 A 1 HETATM 7 O O2B ANP . . . D 3 14.805 -10.397 48.174 1 61.61 ? O2B ANP 702 A 1 HETATM 8 N N3B ANP . . . D 3 12.767 -11.89 47.454 1 53.74 ? N3B ANP 702 A 1 HETATM 9 P PA ANP . . . D 3 16.652 -12.798 47.481 1 65.18 ? PA ANP 702 A 1 HETATM 10 O O1A ANP . . . D 3 16.864 -14.102 46.741 1 77.68 ? O1A ANP 702 A 1 HETATM 11 O O2A ANP . . . D 3 16.642 -11.663 46.478 1 57.4 ? O2A ANP 702 A 1 HETATM 12 O O3A ANP . . . D 3 15.212 -12.861 48.362 1 69.93 ? O3A ANP 702 A 1 HETATM 13 O O5' ANP . . . D 3 17.921 -12.548 48.566 1 54.38 ? O5' ANP 702 A 1 HETATM 14 C C5' ANP . . . D 3 17.772 -11.494 49.532 1 44.38 ? C5' ANP 702 A 1 HETATM 15 C C4' ANP . . . D 3 19.207 -11.139 50.032 1 60.21 ? C4' ANP 702 A 1 HETATM 16 O O4' ANP . . . D 3 20.058 -11.182 49.001 1 63.61 ? O4' ANP 702 A 1 HETATM 17 C C3' ANP . . . D 3 19.305 -9.729 50.506 1 63.71 ? C3' ANP 702 A 1 HETATM 18 O O3' ANP . . . D 3 18.969 -9.643 51.844 1 63.61 ? O3' ANP 702 A 1 HETATM 19 C C2' ANP . . . D 3 20.841 -9.401 50.312 1 55.62 ? C2' ANP 702 A 1 HETATM 20 O O2' ANP . . . D 3 21.613 -9.755 51.535 1 63.77 ? O2' ANP 702 A 1 HETATM 21 C C1' ANP . . . D 3 21.242 -10.15 49.343 1 55.17 ? C1' ANP 702 A 1 HETATM 22 N N9 ANP . . . D 3 21.502 -9.326 48.192 1 61.39 ? N9 ANP 702 A 1 HETATM 23 C C8 ANP . . . D 3 20.73 -9.251 47.097 1 61.6 ? C8 ANP 702 A 1 HETATM 24 N N7 ANP . . . D 3 21.307 -8.397 46.262 1 63.41 ? N7 ANP 702 A 1 HETATM 25 C C5 ANP . . . D 3 22.42 -7.947 46.827 1 60.08 ? C5 ANP 702 A 1 HETATM 26 C C6 ANP . . . D 3 23.388 -7.049 46.396 1 55.86 ? C6 ANP 702 A 1 HETATM 27 N N6 ANP . . . D 3 23.591 -6.232 45.163 1 55.36 ? N6 ANP 702 A 1 HETATM 28 N N1 ANP . . . D 3 24.422 -6.771 47.17 1 62.28 ? N1 ANP 702 A 1 HETATM 29 C C2 ANP . . . D 3 24.547 -7.36 48.395 1 55.18 ? C2 ANP 702 A 1 HETATM 30 N N3 ANP . . . D 3 23.597 -8.238 48.812 1 57.48 ? N3 ANP 702 A 1 HETATM 31 C C4 ANP . . . D 3 22.536 -8.528 48.025 1 63.59 ? C4 ANP 702 A 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #