data_7CTV
#
_model_server_result.job_id            OIOMQUNhS3dWgc8jO96ojg 
_model_server_result.datetime_utc      '2024-12-01 06:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ctv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":702}' 
#
_entry.id    7CTV 
#
_exptl.entry_id    7CTV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.348 
_cell.angle_gamma         90 
_cell.entry_id            7CTV 
_cell.length_a            67.57 
_cell.length_b            50.889 
_cell.length_c            105.416 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CTV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 190 A ASN 494 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc2 A OD2 ASP 203 A ASP 507 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 C MG MG . A MG 701 1_555 D O2A ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc4 C MG MG . A MG 701 1_555 D O2B ANP . A ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc5 B OD1 ASN 190 B ASN 494 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc6 B OD1 ASP 203 B ASP 507 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc7 E MG MG . B MG 701 1_555 F O2A ANP . B ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc8 E MG MG . B MG 701 1_555 F O2B ANP . B ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7CTV 
_atom_sites.fract_transf_matrix[1][1]    0.014799 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001385 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 701 702 MG MG . 
D 3 ANP A 1 702 701 ANP ANP . 
E 2 MG B 1 701 702 MG MG . 
F 3 ANP B 1 702 701 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 5.882 -12.444 94.271 1 98.7 ? PG ANP 702 B 1 
HETATM 2 O O1G ANP . . . F 3 6.834 -11.55 93.487 1 99.11 ? O1G ANP 702 B 1 
HETATM 3 O O2G ANP . . . F 3 4.395 -11.953 94.07 1 93.8 ? O2G ANP 702 B 1 
HETATM 4 O O3G ANP . . . F 3 6.028 -13.908 93.779 1 95.89 ? O3G ANP 702 B 1 
HETATM 5 P PB ANP . . . F 3 7.971 -12.234 96.369 1 99.68 ? PB ANP 702 B 1 
HETATM 6 O O1B ANP . . . F 3 8.108 -12.371 97.879 1 101.54 ? O1B ANP 702 B 1 
HETATM 7 O O2B ANP . . . F 3 8.47 -10.976 95.936 1 109.28 ? O2B ANP 702 B 1 
HETATM 8 N N3B ANP . . . F 3 6.273 -12.36 95.912 1 96.6 ? N3B ANP 702 B 1 
HETATM 9 P PA ANP . . . F 3 10.129 -13.169 94.615 1 101.36 ? PA ANP 702 B 1 
HETATM 10 O O1A ANP . . . F 3 10.228 -14.3 93.614 1 108.81 ? O1A ANP 702 B 1 
HETATM 11 O O2A ANP . . . F 3 10.001 -11.853 93.872 1 99.17 ? O2A ANP 702 B 1 
HETATM 12 O O3A ANP . . . F 3 8.795 -13.43 95.611 1 99.44 ? O3A ANP 702 B 1 
HETATM 13 O O5' ANP . . . F 3 11.521 -13.143 95.579 1 92.52 ? O5' ANP 702 B 1 
HETATM 14 C C5' ANP . . . F 3 11.644 -12.11 96.571 1 94.07 ? C5' ANP 702 B 1 
HETATM 15 C C4' ANP . . . F 3 13.163 -11.762 96.709 1 97.19 ? C4' ANP 702 B 1 
HETATM 16 O O4' ANP . . . F 3 13.728 -11.686 95.499 1 89.67 ? O4' ANP 702 B 1 
HETATM 17 C C3' ANP . . . F 3 13.355 -10.402 97.294 1 105.7 ? C3' ANP 702 B 1 
HETATM 18 O O3' ANP . . . F 3 13.5 -10.488 98.665 1 112.26 ? O3' ANP 702 B 1 
HETATM 19 C C2' ANP . . . F 3 14.707 -9.882 96.652 1 104.25 ? C2' ANP 702 B 1 
HETATM 20 O O2' ANP . . . F 3 15.839 -10.061 97.601 1 103.96 ? O2' ANP 702 B 1 
HETATM 21 C C1' ANP . . . F 3 14.927 -10.619 95.618 1 95.55 ? C1' ANP 702 B 1 
HETATM 22 N N9 ANP . . . F 3 14.962 -9.793 94.436 1 93.02 ? N9 ANP 702 B 1 
HETATM 23 C C8 ANP . . . F 3 13.986 -9.691 93.522 1 87.9 ? C8 ANP 702 B 1 
HETATM 24 N N7 ANP . . . F 3 14.406 -8.848 92.586 1 90.93 ? N7 ANP 702 B 1 
HETATM 25 C C5 ANP . . . F 3 15.624 -8.433 92.911 1 90.25 ? C5 ANP 702 B 1 
HETATM 26 C C6 ANP . . . F 3 16.516 -7.56 92.296 1 88.7 ? C6 ANP 702 B 1 
HETATM 27 N N6 ANP . . . F 3 16.5 -6.736 91.052 1 97.88 ? N6 ANP 702 B 1 
HETATM 28 N N1 ANP . . . F 3 17.689 -7.318 92.848 1 81.7 ? N1 ANP 702 B 1 
HETATM 29 C C2 ANP . . . F 3 18.04 -7.918 94.022 1 85.01 ? C2 ANP 702 B 1 
HETATM 30 N N3 ANP . . . F 3 17.167 -8.77 94.618 1 91.49 ? N3 ANP 702 B 1 
HETATM 31 C C4 ANP . . . F 3 15.962 -9.024 94.06 1 91.67 ? C4 ANP 702 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#