data_7CTW # _model_server_result.job_id ILyn8VGCyeMmMPE-1MAM0Q _model_server_result.datetime_utc '2024-11-09 02:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ctw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7CTW # _exptl.entry_id 7CTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-methylsulfanylphenyl)piperazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CTW _cell.length_a 56.185 _cell.length_b 154.73 _cell.length_c 163.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N2 S' _chem_comp.formula_weight 208.323 _chem_comp.id GEX _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-methylsulfanylphenyl)piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N2 GEX sing 83 n n C10 C11 GEX sing 84 n n N2 C9 GEX sing 85 n n C11 N1 GEX sing 86 n n C9 C8 GEX sing 87 n n N1 C8 GEX sing 88 n n N1 C7 GEX sing 89 n n C6 C7 GEX doub 90 n y C6 C5 GEX sing 91 n y C7 C2 GEX sing 92 n y C5 C4 GEX doub 93 n y C1 S1 GEX sing 94 n n C2 S1 GEX sing 95 n n C2 C3 GEX doub 96 n y C4 C3 GEX sing 97 n y C4 H5 GEX sing 98 n n C5 H6 GEX sing 99 n n C6 H7 GEX sing 100 n n C11 H16 GEX sing 101 n n C11 H15 GEX sing 102 n n C8 H8 GEX sing 103 n n C8 H9 GEX sing 104 n n C9 H11 GEX sing 105 n n C9 H10 GEX sing 106 n n C10 H13 GEX sing 107 n n C10 H14 GEX sing 108 n n N2 H12 GEX sing 109 n n C3 H4 GEX sing 110 n n C1 H1 GEX sing 111 n n C1 H2 GEX sing 112 n n C1 H3 GEX sing 113 n n # _atom_sites.entry_id 7CTW _atom_sites.fract_transf_matrix[1][1] 0.017798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 701 701 NDP NDP . D 3 GEX A 1 702 801 GEX DRG . E 4 PO4 A 1 703 901 PO4 PO4 . F 2 NDP B 1 701 701 NDP NDP . G 5 HOH A 1 801 17 HOH HOH . G 5 HOH A 2 802 29 HOH HOH . G 5 HOH A 3 803 50 HOH HOH . G 5 HOH A 4 804 52 HOH HOH . G 5 HOH A 5 805 7 HOH HOH . G 5 HOH A 6 806 37 HOH HOH . G 5 HOH A 7 807 16 HOH HOH . G 5 HOH A 8 808 12 HOH HOH . G 5 HOH A 9 809 60 HOH HOH . G 5 HOH A 10 810 2 HOH HOH . G 5 HOH A 11 811 33 HOH HOH . G 5 HOH A 12 812 14 HOH HOH . G 5 HOH A 13 813 8 HOH HOH . G 5 HOH A 14 814 9 HOH HOH . G 5 HOH A 15 815 45 HOH HOH . G 5 HOH A 16 816 25 HOH HOH . G 5 HOH A 17 817 13 HOH HOH . G 5 HOH A 18 818 19 HOH HOH . G 5 HOH A 19 819 20 HOH HOH . G 5 HOH A 20 820 57 HOH HOH . G 5 HOH A 21 821 44 HOH HOH . G 5 HOH A 22 822 30 HOH HOH . G 5 HOH A 23 823 49 HOH HOH . G 5 HOH A 24 824 24 HOH HOH . G 5 HOH A 25 825 26 HOH HOH . G 5 HOH A 26 826 21 HOH HOH . G 5 HOH A 27 827 46 HOH HOH . G 5 HOH A 28 828 47 HOH HOH . G 5 HOH A 29 829 38 HOH HOH . G 5 HOH A 30 830 22 HOH HOH . G 5 HOH A 31 831 15 HOH HOH . G 5 HOH A 32 832 34 HOH HOH . G 5 HOH A 33 833 64 HOH HOH . G 5 HOH A 34 834 53 HOH HOH . G 5 HOH A 35 835 61 HOH HOH . G 5 HOH A 36 836 18 HOH HOH . G 5 HOH A 37 837 51 HOH HOH . G 5 HOH A 38 838 39 HOH HOH . G 5 HOH A 39 839 31 HOH HOH . H 5 HOH B 1 801 58 HOH HOH . H 5 HOH B 2 802 6 HOH HOH . H 5 HOH B 3 803 1 HOH HOH . H 5 HOH B 4 804 3 HOH HOH . H 5 HOH B 5 805 5 HOH HOH . H 5 HOH B 6 806 10 HOH HOH . H 5 HOH B 7 807 28 HOH HOH . H 5 HOH B 8 808 40 HOH HOH . H 5 HOH B 9 809 48 HOH HOH . H 5 HOH B 10 810 11 HOH HOH . H 5 HOH B 11 811 36 HOH HOH . H 5 HOH B 12 812 23 HOH HOH . H 5 HOH B 13 813 4 HOH HOH . H 5 HOH B 14 814 42 HOH HOH . H 5 HOH B 15 815 27 HOH HOH . H 5 HOH B 16 816 65 HOH HOH . H 5 HOH B 17 817 55 HOH HOH . H 5 HOH B 18 818 62 HOH HOH . H 5 HOH B 19 819 35 HOH HOH . H 5 HOH B 20 820 54 HOH HOH . H 5 HOH B 21 821 32 HOH HOH . H 5 HOH B 22 822 59 HOH HOH . H 5 HOH B 23 823 43 HOH HOH . H 5 HOH B 24 824 41 HOH HOH . H 5 HOH B 25 825 63 HOH HOH . H 5 HOH B 26 826 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GEX . . . D 3 4.73 -6.626 61.753 1 58.11 ? C4 GEX 702 A 1 HETATM 2 C C5 GEX . . . D 3 4.824 -6.938 60.415 1 53.68 ? C5 GEX 702 A 1 HETATM 3 C C6 GEX . . . D 3 3.72 -6.795 59.592 1 52.13 ? C6 GEX 702 A 1 HETATM 4 C C11 GEX . . . D 3 1.469 -5.546 57.915 1 39.64 ? C11 GEX 702 A 1 HETATM 5 C C7 GEX . . . D 3 2.503 -6.328 60.089 1 49.44 ? C7 GEX 702 A 1 HETATM 6 C C8 GEX . . . D 3 0.076 -6.762 59.479 1 38.08 ? C8 GEX 702 A 1 HETATM 7 C C9 GEX . . . D 3 -0.287 -7.723 58.364 1 37.2 ? C9 GEX 702 A 1 HETATM 8 C C10 GEX . . . D 3 1.108 -6.539 56.825 1 38.9 ? C10 GEX 702 A 1 HETATM 9 N N1 GEX . . . D 3 1.402 -6.19 59.233 1 41.5 ? N1 GEX 702 A 1 HETATM 10 N N2 GEX . . . D 3 -0.228 -7.082 57.052 1 38.05 ? N2 GEX 702 A 1 HETATM 11 C C3 GEX . . . D 3 3.539 -6.153 62.267 1 60.12 ? C3 GEX 702 A 1 HETATM 12 C C1 GEX . . . D 3 0.513 -4.006 61.183 1 54.52 ? C1 GEX 702 A 1 HETATM 13 S S1 GEX . . . D 3 0.965 -5.374 62.243 1 56.72 ? S1 GEX 702 A 1 HETATM 14 C C2 GEX . . . D 3 2.414 -6.002 61.455 1 57.11 ? C2 GEX 702 A 1 HETATM 15 H H5 GEX . . . D 3 5.481 -6.723 62.314 1 58.11 ? H5 GEX 702 A 1 HETATM 16 H H6 GEX . . . D 3 5.636 -7.256 60.056 1 53.68 ? H6 GEX 702 A 1 HETATM 17 H H7 GEX . . . D 3 3.799 -7.018 58.681 1 52.13 ? H7 GEX 702 A 1 HETATM 18 H H16 GEX . . . D 3 0.844 -4.781 57.889 1 39.64 ? H16 GEX 702 A 1 HETATM 19 H H15 GEX . . . D 3 2.382 -5.201 57.762 1 39.64 ? H15 GEX 702 A 1 HETATM 20 H H8 GEX . . . D 3 0.085 -7.244 60.344 1 38.08 ? H8 GEX 702 A 1 HETATM 21 H H9 GEX . . . D 3 -0.591 -6.031 59.519 1 38.08 ? H9 GEX 702 A 1 HETATM 22 H H11 GEX . . . D 3 0.345 -8.485 58.366 1 37.2 ? H11 GEX 702 A 1 HETATM 23 H H10 GEX . . . D 3 -1.208 -8.059 58.504 1 37.2 ? H10 GEX 702 A 1 HETATM 24 H H13 GEX . . . D 3 1.134 -6.078 55.949 1 38.9 ? H13 GEX 702 A 1 HETATM 25 H H14 GEX . . . D 3 1.77 -7.275 56.829 1 38.9 ? H14 GEX 702 A 1 HETATM 26 H H12 GEX . . . D 3 -1.019 -7.149 56.65 1 38.05 ? H12 GEX 702 A 1 HETATM 27 H H4 GEX . . . D 3 3.476 -5.927 63.178 1 60.12 ? H4 GEX 702 A 1 HETATM 28 H H1 GEX . . . D 3 -0.376 -4.155 60.824 1 54.52 ? H1 GEX 702 A 1 HETATM 29 H H2 GEX . . . D 3 1.149 -3.938 60.454 1 54.52 ? H2 GEX 702 A 1 HETATM 30 H H3 GEX . . . D 3 0.521 -3.183 61.697 1 54.52 ? H3 GEX 702 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #