data_7CTX # _model_server_result.job_id xvyyFD23Y0OAnleGUDZy2Q _model_server_result.datetime_utc '2024-10-10 20:29:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ctx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7CTX # _exptl.entry_id 7CTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.65 _cell.angle_gamma 90 _cell.entry_id 7CTX _cell.length_a 72.389 _cell.length_b 50.732 _cell.length_c 93.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 177 A ASN 494 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A OD2 ASP 190 A ASP 507 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 C O1B ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc4 C O2A ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 B OD1 ASN 177 B ASN 494 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 B OD2 ASP 190 B ASP 507 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc7 E O1B ANP . B ANP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 E O2A ANP . B ANP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7CTX _atom_sites.fract_transf_matrix[1][1] 0.013814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 701 701 ANP ANP . D 3 MG A 1 702 702 MG MG . E 2 ANP B 1 701 701 ANP ANP . F 3 MG B 1 702 702 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 -43.858 -14.12 17.205 0 57.38 ? PG ANP 701 A 1 HETATM 2 O O1G ANP . . . C 2 -43.325 -15.186 18.149 0 57.54 ? O1G ANP 701 A 1 HETATM 3 O O2G ANP . . . C 2 -42.709 -13.658 16.23 0 57.54 ? O2G ANP 701 A 1 HETATM 4 O O3G ANP . . . C 2 -44.329 -12.901 18.036 0 57.54 ? O3G ANP 701 A 1 HETATM 5 P PB ANP . . . C 2 -46.796 -14.233 16.512 0 55.91 ? PB ANP 701 A 1 HETATM 6 O O1B ANP . . . C 2 -46.839 -12.742 16.8 0 55.29 ? O1B ANP 701 A 1 HETATM 7 O O2B ANP . . . C 2 -47.53 -14.482 15.32 0 55.29 ? O2B ANP 701 A 1 HETATM 8 N N3B ANP . . . C 2 -45.126 -14.751 16.288 0 56.45 ? N3B ANP 701 A 1 HETATM 9 P PA ANP . . . C 2 -47.554 -14.547 19.345 0 57.38 ? PA ANP 701 A 1 HETATM 10 O O1A ANP . . . C 2 -47.124 -15.672 20.259 0 57.93 ? O1A ANP 701 A 1 HETATM 11 O O2A ANP . . . C 2 -46.644 -13.361 19.568 0 61.55 ? O2A ANP 701 A 1 HETATM 12 O O3A ANP . . . C 2 -47.473 -15.068 17.745 0 56.64 ? O3A ANP 701 A 1 HETATM 13 O O5' ANP . . . C 2 -49.145 -14.088 19.696 0 55.55 ? O5' ANP 701 A 1 HETATM 14 C C5' ANP . . . C 2 -49.936 -13.558 18.621 0 53.79 ? C5' ANP 701 A 1 HETATM 15 C C4' ANP . . . C 2 -51.449 -13.525 19.036 0 52.51 ? C4' ANP 701 A 1 HETATM 16 O O4' ANP . . . C 2 -51.555 -13.569 20.37 0 51.78 ? O4' ANP 701 A 1 HETATM 17 C C3' ANP . . . C 2 -52.064 -12.234 18.594 0 52.08 ? C3' ANP 701 A 1 HETATM 18 O O3' ANP . . . C 2 -52.893 -12.452 17.512 0 52.03 ? O3' ANP 701 A 1 HETATM 19 C C2' ANP . . . C 2 -52.911 -11.709 19.827 0 51.62 ? C2' ANP 701 A 1 HETATM 20 O O2' ANP . . . C 2 -54.362 -11.966 19.6 0 51.82 ? O2' ANP 701 A 1 HETATM 21 C C1' ANP . . . C 2 -52.512 -12.36 20.858 0 51.55 ? C1' ANP 701 A 1 HETATM 22 N N9 ANP . . . C 2 -51.78 -11.485 21.74 0 49.41 ? N9 ANP 701 A 1 HETATM 23 C C8 ANP . . . C 2 -50.443 -11.413 21.846 0 49.99 ? C8 ANP 701 A 1 HETATM 24 N N7 ANP . . . C 2 -50.157 -10.498 22.757 0 49.99 ? N7 ANP 701 A 1 HETATM 25 C C5 ANP . . . C 2 -51.302 -10.002 23.219 0 52.75 ? C5 ANP 701 A 1 HETATM 26 C C6 ANP . . . C 2 -51.58 -9.028 24.173 0 48.61 ? C6 ANP 701 A 1 HETATM 27 N N6 ANP . . . C 2 -50.746 -8.162 25.051 0 49.63 ? N6 ANP 701 A 1 HETATM 28 N N1 ANP . . . C 2 -52.834 -8.714 24.451 0 49.78 ? N1 ANP 701 A 1 HETATM 29 C C2 ANP . . . C 2 -53.859 -9.346 23.8 0 49.37 ? C2 ANP 701 A 1 HETATM 30 N N3 ANP . . . C 2 -53.589 -10.295 22.87 0 50.19 ? N3 ANP 701 A 1 HETATM 31 C C4 ANP . . . C 2 -52.306 -10.618 22.584 0 48.02 ? C4 ANP 701 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #