data_7CTX # _model_server_result.job_id C-UBzOCQMFDRoJXrg2M95Q _model_server_result.datetime_utc '2024-10-10 20:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ctx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 7CTX # _exptl.entry_id 7CTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.65 _cell.angle_gamma 90 _cell.entry_id 7CTX _cell.length_a 72.389 _cell.length_b 50.732 _cell.length_c 93.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 177 A ASN 494 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A OD2 ASP 190 A ASP 507 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 C O1B ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc4 C O2A ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 B OD1 ASN 177 B ASN 494 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 B OD2 ASP 190 B ASP 507 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc7 E O1B ANP . B ANP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 E O2A ANP . B ANP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7CTX _atom_sites.fract_transf_matrix[1][1] 0.013814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 701 701 ANP ANP . D 3 MG A 1 702 702 MG MG . E 2 ANP B 1 701 701 ANP ANP . F 3 MG B 1 702 702 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 -76.972 -38.525 28.522 0 56.85 ? PG ANP 701 B 1 HETATM 2 O O1G ANP . . . E 2 -78.21 -38.659 29.392 0 55.64 ? O1G ANP 701 B 1 HETATM 3 O O2G ANP . . . E 2 -76.815 -37.024 28.061 0 55.64 ? O2G ANP 701 B 1 HETATM 4 O O3G ANP . . . E 2 -77.112 -39.441 27.281 0 55.64 ? O3G ANP 701 B 1 HETATM 5 P PB ANP . . . E 2 -74.01 -38.468 29.059 0 63.15 ? PB ANP 701 B 1 HETATM 6 O O1B ANP . . . E 2 -74.048 -37.1 28.402 0 63.01 ? O1B ANP 701 B 1 HETATM 7 O O2B ANP . . . E 2 -73.268 -38.384 30.265 0 63.54 ? O2B ANP 701 B 1 HETATM 8 N N3B ANP . . . E 2 -75.642 -39.006 29.436 0 59.02 ? N3B ANP 701 B 1 HETATM 9 P PA ANP . . . E 2 -72.978 -39.387 26.443 0 64.04 ? PA ANP 701 B 1 HETATM 10 O O1A ANP . . . E 2 -73.819 -40.387 25.68 0 64.83 ? O1A ANP 701 B 1 HETATM 11 O O2A ANP . . . E 2 -73.309 -37.992 25.963 0 63.64 ? O2A ANP 701 B 1 HETATM 12 O O3A ANP . . . E 2 -73.289 -39.566 28.087 0 62.87 ? O3A ANP 701 B 1 HETATM 13 O O5' ANP . . . E 2 -71.334 -39.686 26.179 0 60.6 ? O5' ANP 701 B 1 HETATM 14 C C5' ANP . . . E 2 -70.433 -39.5 27.282 0 57.23 ? C5' ANP 701 B 1 HETATM 15 C C4' ANP . . . E 2 -69.197 -38.656 26.813 0 52.76 ? C4' ANP 701 B 1 HETATM 16 O O4' ANP . . . E 2 -69.365 -38.23 25.559 0 51.05 ? O4' ANP 701 B 1 HETATM 17 C C3' ANP . . . E 2 -69.096 -37.385 27.594 0 50.27 ? C3' ANP 701 B 1 HETATM 18 O O3' ANP . . . E 2 -68.317 -37.567 28.719 0 49.52 ? O3' ANP 701 B 1 HETATM 19 C C2' ANP . . . E 2 -68.392 -36.374 26.592 0 49.05 ? C2' ANP 701 B 1 HETATM 20 O O2' ANP . . . E 2 -66.993 -36.114 27.033 0 48 ? O2' ANP 701 B 1 HETATM 21 C C1' ANP . . . E 2 -68.385 -36.952 25.444 0 48.6 ? C1' ANP 701 B 1 HETATM 22 N N9 ANP . . . E 2 -68.847 -36.037 24.431 0 48.78 ? N9 ANP 701 B 1 HETATM 23 C C8 ANP . . . E 2 -70.122 -35.843 24.053 0 47.28 ? C8 ANP 701 B 1 HETATM 24 N N7 ANP . . . E 2 -70.128 -34.924 23.102 0 47.28 ? N7 ANP 701 B 1 HETATM 25 C C5 ANP . . . E 2 -68.872 -34.546 22.887 0 47.1 ? C5 ANP 701 B 1 HETATM 26 C C6 ANP . . . E 2 -68.316 -33.622 22.009 0 47.17 ? C6 ANP 701 B 1 HETATM 27 N N6 ANP . . . E 2 -68.875 -32.703 20.981 0 47.09 ? N6 ANP 701 B 1 HETATM 28 N N1 ANP . . . E 2 -67.007 -33.431 21.996 0 47.09 ? N1 ANP 701 B 1 HETATM 29 C C2 ANP . . . E 2 -66.2 -34.141 22.843 0 47.02 ? C2 ANP 701 B 1 HETATM 30 N N3 ANP . . . E 2 -66.742 -35.041 23.698 0 47.36 ? N3 ANP 701 B 1 HETATM 31 C C4 ANP . . . E 2 -68.081 -35.238 23.714 0 46.25 ? C4 ANP 701 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #