data_7CTY # _model_server_result.job_id U-F6EunDXCDHtSu5RDLMMA _model_server_result.datetime_utc '2024-11-15 15:53:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7CTY # _exptl.entry_id 7CTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "spiro[1H-2-benzofuran-3,4'-piperidine]" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CTY _cell.length_a 56.143 _cell.length_b 154.088 _cell.length_c 163.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C12 H15 N O' _chem_comp.formula_weight 189.254 _chem_comp.id GF3 _chem_comp.mon_nstd_flag . _chem_comp.name "spiro[1H-2-benzofuran-3,4'-piperidine]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C10 GF3 sing 83 n n N1 C11 GF3 sing 84 n n C10 C9 GF3 sing 85 n n C11 C12 GF3 sing 86 n n C9 C8 GF3 sing 87 n n C12 C8 GF3 sing 88 n n C8 O1 GF3 sing 89 n n C8 C4 GF3 sing 90 n n O1 C7 GF3 sing 91 n n C4 C3 GF3 doub 92 n y C4 C5 GF3 sing 93 n y C7 C5 GF3 sing 94 n n C3 C2 GF3 sing 95 n y C5 C6 GF3 doub 96 n y C2 C1 GF3 doub 97 n y C6 C1 GF3 sing 98 n y C6 H4 GF3 sing 99 n n C11 H12 GF3 sing 100 n n C11 H13 GF3 sing 101 n n C7 H6 GF3 sing 102 n n C7 H5 GF3 sing 103 n n C9 H7 GF3 sing 104 n n C9 H8 GF3 sing 105 n n C10 H10 GF3 sing 106 n n C10 H9 GF3 sing 107 n n C12 H15 GF3 sing 108 n n C12 H14 GF3 sing 109 n n N1 H11 GF3 sing 110 n n C3 H3 GF3 sing 111 n n C1 H1 GF3 sing 112 n n C2 H2 GF3 sing 113 n n # _atom_sites.entry_id 7CTY _atom_sites.fract_transf_matrix[1][1] 0.017812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 701 701 NDP NDP . D 3 GF3 A 1 702 801 GF3 DRG . E 4 PO4 A 1 703 701 PO4 PO4 . F 4 PO4 B 1 901 901 PO4 PO4 . G 3 GF3 B 1 902 801 GF3 DRG . H 5 HOH A 1 801 5 HOH HOH . H 5 HOH A 2 802 9 HOH HOH . H 5 HOH A 3 803 3 HOH HOH . H 5 HOH A 4 804 11 HOH HOH . H 5 HOH A 5 805 10 HOH HOH . H 5 HOH A 6 806 8 HOH HOH . H 5 HOH A 7 807 2 HOH HOH . H 5 HOH A 8 808 6 HOH HOH . H 5 HOH A 9 809 1 HOH HOH . H 5 HOH A 10 810 15 HOH HOH . H 5 HOH A 11 811 13 HOH HOH . I 5 HOH B 1 1001 16 HOH HOH . I 5 HOH B 2 1002 12 HOH HOH . I 5 HOH B 3 1003 4 HOH HOH . I 5 HOH B 4 1004 14 HOH HOH . I 5 HOH B 5 1005 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GF3 . . . D 3 1.182 -5.646 60.626 1 20.92 ? C4 GF3 702 A 1 HETATM 2 C C5 GF3 . . . D 3 1.886 -6.44 61.515 1 20.55 ? C5 GF3 702 A 1 HETATM 3 C C6 GF3 . . . D 3 2.124 -6.014 62.811 1 19.88 ? C6 GF3 702 A 1 HETATM 4 C C11 GF3 . . . D 3 -0.113 -7.833 57.724 1 19.81 ? C11 GF3 702 A 1 HETATM 5 C C7 GF3 . . . D 3 2.287 -7.686 60.788 1 21.58 ? C7 GF3 702 A 1 HETATM 6 C C8 GF3 . . . D 3 1.126 -6.362 59.303 1 20.69 ? C8 GF3 702 A 1 HETATM 7 C C9 GF3 . . . D 3 1.402 -5.439 58.125 1 21.12 ? C9 GF3 702 A 1 HETATM 8 C C10 GF3 . . . D 3 1.262 -6.138 56.774 1 21.13 ? C10 GF3 702 A 1 HETATM 9 C C12 GF3 . . . D 3 -0.161 -7.128 59.062 1 20 ? C12 GF3 702 A 1 HETATM 10 N N1 GF3 . . . D 3 -0.013 -6.845 56.648 1 20.16 ? N1 GF3 702 A 1 HETATM 11 C C3 GF3 . . . D 3 0.702 -4.406 61.009 1 20.92 ? C3 GF3 702 A 1 HETATM 12 C C1 GF3 . . . D 3 1.637 -4.77 63.189 1 19.7 ? C1 GF3 702 A 1 HETATM 13 C C2 GF3 . . . D 3 0.94 -3.971 62.306 1 19.08 ? C2 GF3 702 A 1 HETATM 14 O O1 GF3 . . . D 3 2.191 -7.326 59.401 1 21.77 ? O1 GF3 702 A 1 HETATM 15 H H4 GF3 . . . D 3 2.619 -6.547 63.405 1 19.88 ? H4 GF3 702 A 1 HETATM 16 H H12 GF3 . . . D 3 0.667 -8.426 57.698 1 0.5 ? H12 GF3 702 A 1 HETATM 17 H H13 GF3 . . . D 3 -0.929 -8.363 57.607 1 19.81 ? H13 GF3 702 A 1 HETATM 18 H H6 GF3 . . . D 3 3.209 -7.952 61.033 1 21.58 ? H6 GF3 702 A 1 HETATM 19 H H5 GF3 . . . D 3 1.678 -8.433 61.014 1 21.58 ? H5 GF3 702 A 1 HETATM 20 H H7 GF3 . . . D 3 0.759 -4.687 58.173 1 21.12 ? H7 GF3 702 A 1 HETATM 21 H H8 GF3 . . . D 3 2.325 -5.094 58.221 1 21.12 ? H8 GF3 702 A 1 HETATM 22 H H10 GF3 . . . D 3 1.315 -5.472 56.057 1 21.13 ? H10 GF3 702 A 1 HETATM 23 H H9 GF3 . . . D 3 1.985 -6.791 56.67 1 21.13 ? H9 GF3 702 A 1 HETATM 24 H H15 GF3 . . . D 3 -0.292 -7.811 59.78 1 20 ? H15 GF3 702 A 1 HETATM 25 H H14 GF3 . . . D 3 -0.913 -6.484 59.071 1 0.5 ? H14 GF3 702 A 1 HETATM 26 H H11 GF3 . . . D 3 -0.459 -6.527 55.946 1 20.16 ? H11 GF3 702 A 1 HETATM 27 H H3 GF3 . . . D 3 0.25 -3.855 60.39 1 20.92 ? H3 GF3 702 A 1 HETATM 28 H H1 GF3 . . . D 3 1.784 -4.461 64.069 1 19.7 ? H1 GF3 702 A 1 HETATM 29 H H2 GF3 . . . D 3 0.622 -3.125 62.58 1 19.08 ? H2 GF3 702 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #