data_7CU3 # _model_server_result.job_id 4KregSH6OkW4qHKgeN44DA _model_server_result.datetime_utc '2025-04-12 10:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2001}' # _entry.id 7CU3 # _exptl.entry_id 7CU3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CU3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 200 B CYS 200 1_555 B SG CYS 270 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf6 B SG CYS 235 B CYS 235 1_555 B SG CYS 322 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 255 B CYS 255 1_555 B SG CYS 273 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 B SG CYS 313 B CYS 313 1_555 B SG CYS 350 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 333 B CYS 333 1_555 B SG CYS 386 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 339 B CYS 339 1_555 B SG CYS 385 B CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 B SG CYS 343 B CYS 343 1_555 B SG CYS 370 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 210 A ASN 210 1_555 C C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 216 A ASN 216 1_555 E C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 D C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 436 n n C1 O1 NAG sing 437 n n C1 O5 NAG sing 438 n n C1 H1 NAG sing 439 n n C2 C3 NAG sing 440 n n C2 N2 NAG sing 441 n n C2 H2 NAG sing 442 n n C3 C4 NAG sing 443 n n C3 O3 NAG sing 444 n n C3 H3 NAG sing 445 n n C4 C5 NAG sing 446 n n C4 O4 NAG sing 447 n n C4 H4 NAG sing 448 n n C5 C6 NAG sing 449 n n C5 O5 NAG sing 450 n n C5 H5 NAG sing 451 n n C6 O6 NAG sing 452 n n C6 H61 NAG sing 453 n n C6 H62 NAG sing 454 n n C7 C8 NAG sing 455 n n C7 N2 NAG sing 456 n n C7 O7 NAG doub 457 n n C8 H81 NAG sing 458 n n C8 H82 NAG sing 459 n n C8 H83 NAG sing 460 n n N2 HN2 NAG sing 461 n n O1 HO1 NAG sing 462 n n O3 HO3 NAG sing 463 n n O4 HO4 NAG sing 464 n n O6 HO6 NAG sing 465 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7CU3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 2001 2001 NAG NAG . D 3 NAG A 1 2002 2002 NAG NAG . E 3 NAG A 1 2003 2003 NAG NAG . F 4 6OU A 1 2004 2004 6OU 6OU . G 4 6OU A 1 2005 2005 6OU 6OU . H 4 6OU A 1 2006 2006 6OU 6OU . I 4 6OU A 1 2007 2007 6OU 6OU . J 4 6OU A 1 2008 2008 6OU 6OU . K 4 6OU A 1 2009 2009 6OU 6OU . L 4 6OU A 1 2010 2010 6OU 6OU . M 4 6OU A 1 2011 2011 6OU 6OU . N 4 6OU A 1 2012 2012 6OU 6OU . O 4 6OU A 1 2013 2013 6OU 6OU . P 4 6OU A 1 2014 2014 6OU 6OU . Q 4 6OU A 1 2015 2015 6OU 6OU . R 5 CLR A 1 2016 2016 CLR CLR . S 5 CLR A 1 2017 2017 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 80.645 121.215 107.574 1 65.36 ? C1 NAG 2001 A 1 HETATM 2 C C2 NAG . . . C 3 79.377 121.435 106.753 1 65.36 ? C2 NAG 2001 A 1 HETATM 3 C C3 NAG . . . C 3 78.284 120.494 107.237 1 65.36 ? C3 NAG 2001 A 1 HETATM 4 C C4 NAG . . . C 3 78.786 119.062 107.142 1 65.36 ? C4 NAG 2001 A 1 HETATM 5 C C5 NAG . . . C 3 80.07 118.92 107.949 1 65.36 ? C5 NAG 2001 A 1 HETATM 6 C C6 NAG . . . C 3 80.636 117.514 107.817 1 65.36 ? C6 NAG 2001 A 1 HETATM 7 C C7 NAG . . . C 3 79.202 123.731 105.946 1 65.36 ? C7 NAG 2001 A 1 HETATM 8 C C8 NAG . . . C 3 79.909 123.242 104.717 1 65.36 ? C8 NAG 2001 A 1 HETATM 9 N N2 NAG . . . C 3 78.921 122.808 106.863 1 65.36 ? N2 NAG 2001 A 1 HETATM 10 O O3 NAG . . . C 3 77.117 120.645 106.421 1 65.36 ? O3 NAG 2001 A 1 HETATM 11 O O4 NAG . . . C 3 77.789 118.17 107.652 1 65.36 ? O4 NAG 2001 A 1 HETATM 12 O O5 NAG . . . C 3 81.042 119.848 107.472 1 65.36 ? O5 NAG 2001 A 1 HETATM 13 O O6 NAG . . . C 3 81.148 117.34 106.491 1 65.36 ? O6 NAG 2001 A 1 HETATM 14 O O7 NAG . . . C 3 78.904 124.904 106.098 1 65.36 ? O7 NAG 2001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #