data_7CUB # _model_server_result.job_id qqTtgIRwHaZcodALm89DWA _model_server_result.datetime_utc '2025-02-27 01:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1007}' # _entry.id 7CUB # _exptl.entry_id 7CUB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 727.109 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-8 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CUB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 106 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A ND1 HIS 284 A HIS 284 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 A NE2 HIS 333 A HIS 333 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A NE2 HIS 334 A HIS 334 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 A NE2 HIS 419 A HIS 419 1_555 F FE HEO . A HEO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 A NE2 HIS 421 A HIS 421 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C49 H74 O4' _chem_comp.formula_weight 727.109 _chem_comp.id UQ8 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-8 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dimethoxy-5-methyl-6-[(6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-oc taen-1-yl]cyclohexa-2,5-diene-1,4-dione' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C45 C44 UQ8 sing 696 n n C45 H45 UQ8 sing 697 n n C45 H45A UQ8 sing 698 n n C45 H45B UQ8 sing 699 n n C43 C44 UQ8 doub 700 n n C44 C46 UQ8 sing 701 n n C46 H46 UQ8 sing 702 n n C46 H46A UQ8 sing 703 n n C46 H46B UQ8 sing 704 n n C42 C43 UQ8 sing 705 n n C43 H43 UQ8 sing 706 n n C41 C42 UQ8 sing 707 n n C42 H42 UQ8 sing 708 n n C42 H42A UQ8 sing 709 n n C39 C41 UQ8 sing 710 n n C41 H41 UQ8 sing 711 n n C41 H41A UQ8 sing 712 n n C40 C39 UQ8 sing 713 n n C38 C39 UQ8 doub 714 n n C40 H40 UQ8 sing 715 n n C40 H40A UQ8 sing 716 n n C40 H40B UQ8 sing 717 e n C37 C38 UQ8 sing 718 n n C38 H38 UQ8 sing 719 n n C37 C36 UQ8 sing 720 n n C37 H37 UQ8 sing 721 n n C37 H37A UQ8 sing 722 n n C34 C36 UQ8 sing 723 n n C36 H36 UQ8 sing 724 n n C36 H36A UQ8 sing 725 n n C33 C34 UQ8 doub 726 n n C34 C35 UQ8 sing 727 n n C35 H35 UQ8 sing 728 n n C35 H35A UQ8 sing 729 n n C32 C33 UQ8 sing 730 e n C33 H33 UQ8 sing 731 n n C35 H35B UQ8 sing 732 n n C31 C32 UQ8 sing 733 n n C32 H32 UQ8 sing 734 n n C32 H32A UQ8 sing 735 n n C29 C31 UQ8 sing 736 n n C31 H31 UQ8 sing 737 n n C31 H31A UQ8 sing 738 n n C28 C29 UQ8 doub 739 n n C30 C29 UQ8 sing 740 n n C30 H30 UQ8 sing 741 n n C30 H30A UQ8 sing 742 n n C30 H30B UQ8 sing 743 e n C27 C28 UQ8 sing 744 n n C28 H28 UQ8 sing 745 n n C26 C27 UQ8 sing 746 n n C27 H27 UQ8 sing 747 n n C27 H27A UQ8 sing 748 n n C24 C26 UQ8 sing 749 n n C26 H26 UQ8 sing 750 n n C26 H26A UQ8 sing 751 n n C23 C24 UQ8 doub 752 n n C24 C25 UQ8 sing 753 n n C25 H25 UQ8 sing 754 n n C25 H25A UQ8 sing 755 n n C25 H25B UQ8 sing 756 e n C22 C23 UQ8 sing 757 n n C23 H23 UQ8 sing 758 n n C21 C22 UQ8 sing 759 n n C22 H22 UQ8 sing 760 n n C22 H22A UQ8 sing 761 n n C19 C21 UQ8 sing 762 n n C21 H21 UQ8 sing 763 n n C21 H21A UQ8 sing 764 n n C20 C19 UQ8 sing 765 n n C18 C19 UQ8 doub 766 n n C20 H20 UQ8 sing 767 n n C20 H20A UQ8 sing 768 n n C20 H20B UQ8 sing 769 e n C17 C18 UQ8 sing 770 n n C18 H18 UQ8 sing 771 n n C16 C17 UQ8 sing 772 n n C17 H17 UQ8 sing 773 n n C17 H17A UQ8 sing 774 n n C14 C16 UQ8 sing 775 n n C16 H16 UQ8 sing 776 n n C16 H16A UQ8 sing 777 n n C13 C14 UQ8 doub 778 n n C15 C14 UQ8 sing 779 n n C15 H15 UQ8 sing 780 n n C15 H15A UQ8 sing 781 n n C15 H15B UQ8 sing 782 e n C12 C13 UQ8 sing 783 n n C13 H13 UQ8 sing 784 n n C11 C12 UQ8 sing 785 n n C12 H12 UQ8 sing 786 n n C12 H12A UQ8 sing 787 n n C9 C11 UQ8 sing 788 n n C11 H11 UQ8 sing 789 n n C11 H11A UQ8 sing 790 n n C8 C9 UQ8 doub 791 n n C10 C9 UQ8 sing 792 n n C10 H10 UQ8 sing 793 n n C10 H10A UQ8 sing 794 n n C10 H10B UQ8 sing 795 e n C7 C8 UQ8 sing 796 n n C8 H8 UQ8 sing 797 n n C6 C7 UQ8 sing 798 n n C7 H7 UQ8 sing 799 n n C7 H7A UQ8 sing 800 n n C1 C6 UQ8 doub 801 n n C5 C6 UQ8 sing 802 n n C2 C1 UQ8 sing 803 n n C1 C1M UQ8 sing 804 n n C1M H1M UQ8 sing 805 n n C1M H1MA UQ8 sing 806 n n C1M H1MB UQ8 sing 807 n n O2 C2 UQ8 doub 808 n n C3 C2 UQ8 sing 809 n n O3 C3 UQ8 sing 810 n n C3 C4 UQ8 doub 811 n n C3M O3 UQ8 sing 812 n n C3M H3M UQ8 sing 813 n n C3M H3MA UQ8 sing 814 n n C3M H3MB UQ8 sing 815 n n O4 C4 UQ8 sing 816 n n C4 C5 UQ8 sing 817 n n C4M O4 UQ8 sing 818 n n C4M H4M UQ8 sing 819 n n C4M H4MA UQ8 sing 820 n n C4M H4MB UQ8 sing 821 n n C5 O5 UQ8 doub 822 n n # _atom_sites.entry_id 7CUB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 1001 1001 HEM HEM . F 6 HEO A 1 1002 1002 HEO HEO . G 7 CU A 1 1003 1003 CU CU . H 8 3PE A 1 1004 1201 3PE PEH . I 8 3PE A 1 1005 1301 3PE PEH . J 8 3PE A 1 1006 1501 3PE PEH . K 9 UQ8 A 1 1007 1601 UQ8 UQ8 . L 8 3PE A 1 1008 1701 3PE PEH . M 8 3PE C 1 301 301 3PE PEH . N 10 HOH A 1 1101 9 HOH HOH . N 10 HOH A 2 1102 6 HOH HOH . N 10 HOH A 3 1103 14 HOH HOH . N 10 HOH A 4 1104 8 HOH HOH . N 10 HOH A 5 1105 12 HOH HOH . N 10 HOH A 6 1106 1 HOH HOH . N 10 HOH A 7 1107 3 HOH HOH . N 10 HOH A 8 1108 2 HOH HOH . N 10 HOH A 9 1109 13 HOH HOH . N 10 HOH A 10 1110 15 HOH HOH . N 10 HOH A 11 1111 11 HOH HOH . N 10 HOH A 12 1112 5 HOH HOH . N 10 HOH A 13 1113 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 UQ8 . . . K 9 152.161 125.485 152.543 1 38.56 ? C26 UQ8 1007 A 1 HETATM 2 C C24 UQ8 . . . K 9 151.018 126.29 153.158 1 38.56 ? C24 UQ8 1007 A 1 HETATM 3 C C25 UQ8 . . . K 9 150.276 127.182 152.168 1 38.56 ? C25 UQ8 1007 A 1 HETATM 4 C C23 UQ8 . . . K 9 150.484 125.956 154.549 1 38.56 ? C23 UQ8 1007 A 1 HETATM 5 C C22 UQ8 . . . K 9 150.983 126.459 155.902 1 38.56 ? C22 UQ8 1007 A 1 HETATM 6 C C21 UQ8 . . . K 9 149.803 126.631 156.855 1 38.56 ? C21 UQ8 1007 A 1 HETATM 7 C C19 UQ8 . . . K 9 150.153 126.035 158.218 1 38.56 ? C19 UQ8 1007 A 1 HETATM 8 C C20 UQ8 . . . K 9 149.76 124.572 158.401 1 38.56 ? C20 UQ8 1007 A 1 HETATM 9 C C18 UQ8 . . . K 9 150.768 126.888 159.324 1 38.56 ? C18 UQ8 1007 A 1 HETATM 10 C C17 UQ8 . . . K 9 150.953 126.531 160.797 1 38.56 ? C17 UQ8 1007 A 1 HETATM 11 C C16 UQ8 . . . K 9 152.34 126.986 161.246 1 38.56 ? C16 UQ8 1007 A 1 HETATM 12 C C14 UQ8 . . . K 9 152.534 126.738 162.741 1 38.56 ? C14 UQ8 1007 A 1 HETATM 13 C C15 UQ8 . . . K 9 151.439 127.296 163.646 1 38.56 ? C15 UQ8 1007 A 1 HETATM 14 C C13 UQ8 . . . K 9 153.752 125.978 163.258 1 38.56 ? C13 UQ8 1007 A 1 HETATM 15 C C12 UQ8 . . . K 9 155.196 126.464 163.359 1 38.56 ? C12 UQ8 1007 A 1 HETATM 16 C C11 UQ8 . . . K 9 155.225 127.988 163.438 1 38.56 ? C11 UQ8 1007 A 1 HETATM 17 C C9 UQ8 . . . K 9 156.442 128.494 164.217 1 38.56 ? C9 UQ8 1007 A 1 HETATM 18 C C10 UQ8 . . . K 9 156.766 127.716 165.494 1 38.56 ? C10 UQ8 1007 A 1 HETATM 19 C C8 UQ8 . . . K 9 157.513 129.279 163.465 1 38.56 ? C8 UQ8 1007 A 1 HETATM 20 C C7 UQ8 . . . K 9 157.883 128.96 162.019 1 38.56 ? C7 UQ8 1007 A 1 HETATM 21 C C6 UQ8 . . . K 9 159.291 129.308 161.516 1 38.56 ? C6 UQ8 1007 A 1 HETATM 22 C C1 UQ8 . . . K 9 160.435 128.597 161.878 1 38.56 ? C1 UQ8 1007 A 1 HETATM 23 C C1M UQ8 . . . K 9 160.431 127.421 162.853 1 38.56 ? C1M UQ8 1007 A 1 HETATM 24 C C2 UQ8 . . . K 9 161.656 128.964 161.35 1 38.56 ? C2 UQ8 1007 A 1 HETATM 25 O O2 UQ8 . . . K 9 162.801 128.258 161.724 1 38.56 ? O2 UQ8 1007 A 1 HETATM 26 C C3 UQ8 . . . K 9 161.768 130.014 160.461 1 38.56 ? C3 UQ8 1007 A 1 HETATM 27 O O3 UQ8 . . . K 9 163.041 130.301 159.953 1 38.56 ? O3 UQ8 1007 A 1 HETATM 28 C C3M UQ8 . . . K 9 163.614 131.413 160.549 1 38.56 ? C3M UQ8 1007 A 1 HETATM 29 C C4 UQ8 . . . K 9 160.631 130.714 160.073 1 38.56 ? C4 UQ8 1007 A 1 HETATM 30 O O4 UQ8 . . . K 9 160.691 131.792 159.17 1 38.56 ? O4 UQ8 1007 A 1 HETATM 31 C C4M UQ8 . . . K 9 160.785 131.357 157.84 1 38.56 ? C4M UQ8 1007 A 1 HETATM 32 C C5 UQ8 . . . K 9 159.402 130.351 160.607 1 38.56 ? C5 UQ8 1007 A 1 HETATM 33 O O5 UQ8 . . . K 9 158.253 131.053 160.232 1 38.56 ? O5 UQ8 1007 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #