data_7CV6 # _model_server_result.job_id B93cCzhSxJlSFfWYE2M7ww _model_server_result.datetime_utc '2024-10-18 15:32:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7CV6 # _exptl.entry_id 7CV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CV6 _cell.length_a 93.821 _cell.length_b 130.022 _cell.length_c 141.322 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 319 n n N HN1 SAH sing 320 n n N HN2 SAH sing 321 n n CA CB SAH sing 322 n n CA C SAH sing 323 n n CA HA SAH sing 324 n n CB CG SAH sing 325 n n CB HB1 SAH sing 326 n n CB HB2 SAH sing 327 n n CG SD SAH sing 328 n n CG HG1 SAH sing 329 n n CG HG2 SAH sing 330 n n SD C5' SAH sing 331 n n C O SAH doub 332 n n C OXT SAH sing 333 n n OXT HXT SAH sing 334 n n C5' C4' SAH sing 335 n n C5' "H5'1" SAH sing 336 n n C5' "H5'2" SAH sing 337 n n C4' O4' SAH sing 338 n n C4' C3' SAH sing 339 n n C4' H4' SAH sing 340 n n O4' C1' SAH sing 341 n n C3' O3' SAH sing 342 n n C3' C2' SAH sing 343 n n C3' H3' SAH sing 344 n n O3' HO3' SAH sing 345 n n C2' O2' SAH sing 346 n n C2' C1' SAH sing 347 n n C2' H2' SAH sing 348 n n O2' HO2' SAH sing 349 n n C1' N9 SAH sing 350 n n C1' H1' SAH sing 351 n n N9 C8 SAH sing 352 n y N9 C4 SAH sing 353 n y C8 N7 SAH doub 354 n y C8 H8 SAH sing 355 n n N7 C5 SAH sing 356 n y C5 C6 SAH sing 357 n y C5 C4 SAH doub 358 n y C6 N6 SAH sing 359 n n C6 N1 SAH doub 360 n y N6 HN61 SAH sing 361 n n N6 HN62 SAH sing 362 n n N1 C2 SAH sing 363 n y C2 N3 SAH doub 364 n y C2 H2 SAH sing 365 n n N3 C4 SAH sing 366 n y # _atom_sites.entry_id 7CV6 _atom_sites.fract_transf_matrix[1][1] 0.010659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH B 1 501 1 SAH SAH . C 3 A2M B 1 502 1 A2M A2M . D 3 A2M B 1 503 2 A2M A2M . E 4 HOH B 1 601 9 HOH HOH . E 4 HOH B 2 602 7 HOH HOH . E 4 HOH B 3 603 12 HOH HOH . E 4 HOH B 4 604 11 HOH HOH . E 4 HOH B 5 605 10 HOH HOH . E 4 HOH B 6 606 18 HOH HOH . E 4 HOH B 7 607 1 HOH HOH . E 4 HOH B 8 608 19 HOH HOH . E 4 HOH B 9 609 6 HOH HOH . E 4 HOH B 10 610 4 HOH HOH . E 4 HOH B 11 611 8 HOH HOH . E 4 HOH B 12 612 13 HOH HOH . E 4 HOH B 13 613 15 HOH HOH . E 4 HOH B 14 614 16 HOH HOH . E 4 HOH B 15 615 3 HOH HOH . E 4 HOH B 16 616 2 HOH HOH . E 4 HOH B 17 617 17 HOH HOH . E 4 HOH B 18 618 5 HOH HOH . E 4 HOH B 19 619 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -17.396 -23.565 -22.102 1 82.84 ? N SAH 501 B 1 HETATM 2 C CA SAH . . . B 2 -17.577 -23.653 -23.589 1 85.93 ? CA SAH 501 B 1 HETATM 3 C CB SAH . . . B 2 -18.886 -24.423 -23.909 1 93.95 ? CB SAH 501 B 1 HETATM 4 C CG SAH . . . B 2 -19.065 -25.822 -23.242 1 97.17 ? CG SAH 501 B 1 HETATM 5 S SD SAH . . . B 2 -20.475 -26.085 -22.162 1 93.19 ? SD SAH 501 B 1 HETATM 6 C C SAH . . . B 2 -17.537 -22.265 -24.217 1 79.23 ? C SAH 501 B 1 HETATM 7 O O SAH . . . B 2 -16.628 -21.458 -23.959 1 66.28 ? O SAH 501 B 1 HETATM 8 O OXT SAH . . . B 2 -18.411 -21.889 -25.008 1 74.19 ? OXT SAH 501 B 1 HETATM 9 C C5' SAH . . . B 2 -21.129 -27.677 -22.595 1 83.68 ? C5' SAH 501 B 1 HETATM 10 C C4' SAH . . . B 2 -22.458 -27.56 -23.358 1 76.86 ? C4' SAH 501 B 1 HETATM 11 O O4' SAH . . . B 2 -22.798 -28.741 -24.086 1 73.18 ? O4' SAH 501 B 1 HETATM 12 C C3' SAH . . . B 2 -23.638 -27.348 -22.427 1 77.24 ? C3' SAH 501 B 1 HETATM 13 O O3' SAH . . . B 2 -24.077 -26.001 -22.495 1 84.37 ? O3' SAH 501 B 1 HETATM 14 C C2' SAH . . . B 2 -24.752 -28.266 -22.88 1 75.31 ? C2' SAH 501 B 1 HETATM 15 O O2' SAH . . . B 2 -25.978 -27.543 -23.084 1 72.98 ? O2' SAH 501 B 1 HETATM 16 C C1' SAH . . . B 2 -24.226 -28.877 -24.177 1 74.38 ? C1' SAH 501 B 1 HETATM 17 N N9 SAH . . . B 2 -24.705 -30.281 -24.452 1 73.06 ? N9 SAH 501 B 1 HETATM 18 C C8 SAH . . . B 2 -24.998 -31.235 -23.545 1 73.01 ? C8 SAH 501 B 1 HETATM 19 N N7 SAH . . . B 2 -25.407 -32.386 -24.125 1 73.37 ? N7 SAH 501 B 1 HETATM 20 C C5 SAH . . . B 2 -25.398 -32.193 -25.447 1 72.68 ? C5 SAH 501 B 1 HETATM 21 C C6 SAH . . . B 2 -25.724 -33.013 -26.639 1 69.77 ? C6 SAH 501 B 1 HETATM 22 N N6 SAH . . . B 2 -26.128 -34.285 -26.473 1 67.07 ? N6 SAH 501 B 1 HETATM 23 N N1 SAH . . . B 2 -25.596 -32.462 -27.871 1 70.06 ? N1 SAH 501 B 1 HETATM 24 C C2 SAH . . . B 2 -25.169 -31.188 -28.018 1 74.1 ? C2 SAH 501 B 1 HETATM 25 N N3 SAH . . . B 2 -24.854 -30.382 -26.971 1 76.99 ? N3 SAH 501 B 1 HETATM 26 C C4 SAH . . . B 2 -24.936 -30.812 -25.671 1 74.67 ? C4 SAH 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #