data_7CVP # _model_server_result.job_id zqvDjX6VhVH614Xmek0CEQ _model_server_result.datetime_utc '2025-04-20 21:50:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7CVP # _exptl.entry_id 7CVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.974 _cell.angle_gamma 90 _cell.entry_id 7CVP _cell.length_a 43.101 _cell.length_b 121.638 _cell.length_c 59.372 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7CVP _atom_sites.fract_transf_matrix[1][1] 0.023201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 1 NAD NAD . D 2 NAD B 1 401 2 NAD NAD . E 3 HOH A 1 501 6 HOH HOH . E 3 HOH A 2 502 3 HOH HOH . E 3 HOH A 3 503 7 HOH HOH . E 3 HOH A 4 504 5 HOH HOH . E 3 HOH A 5 505 1 HOH HOH . E 3 HOH A 6 506 14 HOH HOH . E 3 HOH A 7 507 2 HOH HOH . E 3 HOH A 8 508 8 HOH HOH . E 3 HOH A 9 509 16 HOH HOH . E 3 HOH A 10 510 15 HOH HOH . E 3 HOH A 11 511 12 HOH HOH . E 3 HOH A 12 512 13 HOH HOH . F 3 HOH B 1 501 4 HOH HOH . F 3 HOH B 2 502 9 HOH HOH . F 3 HOH B 3 503 10 HOH HOH . F 3 HOH B 4 504 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 17.198 -1.028 33.965 1 43.36 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 17.184 -2.161 34.94 1 45.48 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 18.391 -0.848 33.09 1 41.71 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 16.897 0.348 34.726 1 39.53 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 15.882 0.446 35.758 1 39.39 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 16.014 1.798 36.418 1 38.87 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 14.807 2.133 37.157 1 37.57 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 17.171 1.925 37.424 1 37.11 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 17.963 3.066 37.123 1 33.63 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 16.444 2.054 38.766 1 36.52 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 17.169 2.771 39.736 1 36.92 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 15.211 2.822 38.316 1 36.97 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 14.13 2.879 39.296 1 36.26 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 13.653 1.859 40.079 1 36.05 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 12.679 2.227 40.874 1 36.49 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 12.503 3.576 40.608 1 35.71 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 11.617 4.541 41.13 1 35.59 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 10.709 4.289 42.069 1 35.27 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 11.704 5.798 40.638 1 35.36 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 12.613 6.048 39.688 1 35.89 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 13.498 5.228 39.13 1 35.11 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 13.392 3.988 39.635 1 36.17 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 15.902 -1.182 33.039 1 43.49 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 15.634 -1.025 31.467 1 42.42 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 16.475 -2.016 30.731 1 44.58 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 15.761 0.421 31.101 1 42.5 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 14.092 -1.473 31.431 1 39.81 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 13.174 -0.664 32.222 1 38.71 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 11.781 -1.248 32.187 1 37.26 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 11.394 -1.536 30.825 1 35.19 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 11.585 -2.561 32.959 1 36.46 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 10.404 -2.47 33.744 1 37.39 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 11.498 -3.593 31.827 1 34.98 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 10.796 -4.782 32.143 1 33.11 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 10.727 -2.783 30.799 1 34.33 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 10.759 -3.359 29.42 1 34.16 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 9.584 -3.52 28.728 1 33.88 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 9.603 -4.117 27.48 1 33.3 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 8.415 -3.937 26.574 1 32.6 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 8.148 -4.822 25.763 1 33.05 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 7.719 -2.812 26.681 1 30.72 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 10.732 -4.846 27.111 1 33.6 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 11.924 -4.592 27.747 1 33.35 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 11.928 -3.752 28.837 1 33.76 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #