data_7CVP
#
_model_server_result.job_id            1PV87SExUf3uuG9h53znog 
_model_server_result.datetime_utc      '2025-03-29 18:59:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7CVP 
#
_exptl.entry_id    7CVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.974 
_cell.angle_gamma         90 
_cell.entry_id            7CVP 
_cell.length_a            43.101 
_cell.length_b            121.638 
_cell.length_c            59.372 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     7CVP 
_atom_sites.fract_transf_matrix[1][1]    0.023201 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00408 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017101 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 401 1 NAD NAD . 
D 2 NAD B 1 401 2 NAD NAD . 
E 3 HOH A 1 501 6 HOH HOH . 
E 3 HOH A 2 502 3 HOH HOH . 
E 3 HOH A 3 503 7 HOH HOH . 
E 3 HOH A 4 504 5 HOH HOH . 
E 3 HOH A 5 505 1 HOH HOH . 
E 3 HOH A 6 506 14 HOH HOH . 
E 3 HOH A 7 507 2 HOH HOH . 
E 3 HOH A 8 508 8 HOH HOH . 
E 3 HOH A 9 509 16 HOH HOH . 
E 3 HOH A 10 510 15 HOH HOH . 
E 3 HOH A 11 511 12 HOH HOH . 
E 3 HOH A 12 512 13 HOH HOH . 
F 3 HOH B 1 501 4 HOH HOH . 
F 3 HOH B 2 502 9 HOH HOH . 
F 3 HOH B 3 503 10 HOH HOH . 
F 3 HOH B 4 504 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 12.42 24.206 1.015 1 36.2 ? PA NAD 401 B 1 
HETATM 2 O O1A NAD . . . D 2 12.218 24.965 -0.258 1 37.23 ? O1A NAD 401 B 1 
HETATM 3 O O2A NAD . . . D 2 13.145 24.883 2.127 1 34.36 ? O2A NAD 401 B 1 
HETATM 4 O O5B NAD . . . D 2 13.114 22.783 0.703 1 36.61 ? O5B NAD 401 B 1 
HETATM 5 C C5B NAD . . . D 2 12.847 22.025 -0.512 1 35.96 ? C5B NAD 401 B 1 
HETATM 6 C C4B NAD . . . D 2 14.154 21.729 -1.21 1 36.9 ? C4B NAD 401 B 1 
HETATM 7 O O4B NAD . . . D 2 13.954 20.758 -2.275 1 36.98 ? O4B NAD 401 B 1 
HETATM 8 C C3B NAD . . . D 2 14.841 22.94 -1.873 1 36.91 ? C3B NAD 401 B 1 
HETATM 9 O O3B NAD . . . D 2 16.175 23.121 -1.414 1 36.13 ? O3B NAD 401 B 1 
HETATM 10 C C2B NAD . . . D 2 14.85 22.585 -3.363 1 36.68 ? C2B NAD 401 B 1 
HETATM 11 O O2B NAD . . . D 2 15.978 23.097 -4.033 1 35.69 ? O2B NAD 401 B 1 
HETATM 12 C C1B NAD . . . D 2 14.887 21.063 -3.284 1 37.62 ? C1B NAD 401 B 1 
HETATM 13 N N9A NAD . . . D 2 14.565 20.377 -4.533 1 38.01 ? N9A NAD 401 B 1 
HETATM 14 C C8A NAD . . . D 2 14.045 20.934 -5.678 1 38.64 ? C8A NAD 401 B 1 
HETATM 15 N N7A NAD . . . D 2 13.896 20.076 -6.656 1 37.84 ? N7A NAD 401 B 1 
HETATM 16 C C5A NAD . . . D 2 14.374 18.882 -6.137 1 37.35 ? C5A NAD 401 B 1 
HETATM 17 C C6A NAD . . . D 2 14.492 17.592 -6.69 1 36.6 ? C6A NAD 401 B 1 
HETATM 18 N N6A NAD . . . D 2 14.139 17.299 -7.937 1 37.06 ? N6A NAD 401 B 1 
HETATM 19 N N1A NAD . . . D 2 15.019 16.616 -5.909 1 35.98 ? N1A NAD 401 B 1 
HETATM 20 C C2A NAD . . . D 2 15.382 16.929 -4.657 1 36.32 ? C2A NAD 401 B 1 
HETATM 21 N N3A NAD . . . D 2 15.31 18.102 -4.03 1 37.99 ? N3A NAD 401 B 1 
HETATM 22 C C4A NAD . . . D 2 14.793 19.054 -4.83 1 38.03 ? C4A NAD 401 B 1 
HETATM 23 O O3 NAD . . . D 2 10.987 23.761 1.579 1 39.28 ? O3 NAD 401 B 1 
HETATM 24 P PN NAD . . . D 2 10.582 22.807 2.804 1 40.55 ? PN NAD 401 B 1 
HETATM 25 O O1N NAD . . . D 2 10.272 23.623 4.013 1 42.89 ? O1N NAD 401 B 1 
HETATM 26 O O2N NAD . . . D 2 11.637 21.756 2.942 1 44 ? O2N NAD 401 B 1 
HETATM 27 O O5D NAD . . . D 2 9.222 22.162 2.237 1 41.55 ? O5D NAD 401 B 1 
HETATM 28 C C5D NAD . . . D 2 9.291 20.871 1.573 1 41.83 ? C5D NAD 401 B 1 
HETATM 29 C C4D NAD . . . D 2 7.937 20.509 1.007 1 42.24 ? C4D NAD 401 B 1 
HETATM 30 O O4D NAD . . . D 2 7.045 20.134 2.082 1 41.58 ? O4D NAD 401 B 1 
HETATM 31 C C3D NAD . . . D 2 7.212 21.613 0.219 1 41.75 ? C3D NAD 401 B 1 
HETATM 32 O O3D NAD . . . D 2 6.581 21.063 -0.929 1 43.6 ? O3D NAD 401 B 1 
HETATM 33 C C2D NAD . . . D 2 6.18 22.12 1.23 1 40.88 ? C2D NAD 401 B 1 
HETATM 34 O O2D NAD . . . D 2 5.054 22.725 0.618 1 39.68 ? O2D NAD 401 B 1 
HETATM 35 C C1D NAD . . . D 2 5.804 20.824 1.939 1 40.57 ? C1D NAD 401 B 1 
HETATM 36 N N1N NAD . . . D 2 5.189 21.023 3.29 1 39.2 ? N1N NAD 401 B 1 
HETATM 37 C C2N NAD . . . D 2 4.197 20.16 3.727 1 37.89 ? C2N NAD 401 B 1 
HETATM 38 C C3N NAD . . . D 2 3.552 20.385 4.943 1 37.22 ? C3N NAD 401 B 1 
HETATM 39 C C7N NAD . . . D 2 2.428 19.482 5.396 1 35.74 ? C7N NAD 401 B 1 
HETATM 40 O O7N NAD . . . D 2 1.441 19.979 5.93 1 35.31 ? O7N NAD 401 B 1 
HETATM 41 N N7N NAD . . . D 2 2.563 18.176 5.219 1 34.18 ? N7N NAD 401 B 1 
HETATM 42 C C4N NAD . . . D 2 3.962 21.46 5.73 1 36.64 ? C4N NAD 401 B 1 
HETATM 43 C C5N NAD . . . D 2 5.088 22.168 5.38 1 36.52 ? C5N NAD 401 B 1 
HETATM 44 C C6N NAD . . . D 2 5.607 22.023 4.113 1 37.37 ? C6N NAD 401 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#