data_7CVV # _model_server_result.job_id rslfaCVsIVbbcPUk7hT58w _model_server_result.datetime_utc '2024-10-10 07:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7CVV # _exptl.entry_id 7CVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.12 _cell.angle_gamma 90 _cell.entry_id 7CVV _cell.length_a 166.185 _cell.length_b 93.181 _cell.length_c 43.335 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F,G,I 1 1 B,E,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -10.571727 0 42.025716 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 7CVV _atom_sites.fract_transf_matrix[1][1] 0.006017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001514 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAM A 1 301 1 SAM SAM . E 2 SAM B 1 301 2 SAM SAM . F 2 SAM C 1 301 3 SAM SAM . G 3 HOH A 1 401 2 HOH HOH . G 3 HOH A 2 402 10 HOH HOH . G 3 HOH A 3 403 15 HOH HOH . G 3 HOH A 4 404 16 HOH HOH . G 3 HOH A 5 405 8 HOH HOH . G 3 HOH A 6 406 14 HOH HOH . H 3 HOH B 1 401 9 HOH HOH . H 3 HOH B 2 402 12 HOH HOH . I 3 HOH C 1 401 4 HOH HOH . I 3 HOH C 2 402 3 HOH HOH . I 3 HOH C 3 403 5 HOH HOH . I 3 HOH C 4 404 6 HOH HOH . I 3 HOH C 5 405 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . F 2 18.134 27.936 11.001 1 52.24 ? N SAM 301 C 1 HETATM 2 C CA SAM . . . F 2 17.54 28.928 10.067 1 51.43 ? CA SAM 301 C 1 HETATM 3 C C SAM . . . F 2 18.074 28.711 8.638 1 50.9 ? C SAM 301 C 1 HETATM 4 O O SAM . . . F 2 19.091 28.017 8.478 1 50.63 ? O SAM 301 C 1 HETATM 5 O OXT SAM . . . F 2 17.439 29.226 7.724 1 55.79 ? OXT SAM 301 C 1 HETATM 6 C CB SAM . . . F 2 17.868 30.351 10.537 1 51.14 ? CB SAM 301 C 1 HETATM 7 C CG SAM . . . F 2 17.081 30.842 11.766 1 50.23 ? CG SAM 301 C 1 HETATM 8 S SD SAM . . . F 2 18.013 32.18 12.576 1 54.55 ? SD SAM 301 C 1 HETATM 9 C CE SAM . . . F 2 19.127 31.226 13.605 1 56.28 ? CE SAM 301 C 1 HETATM 10 C C5' SAM . . . F 2 16.899 32.899 13.844 1 49.73 ? C5' SAM 301 C 1 HETATM 11 C C4' SAM . . . F 2 15.563 33.423 13.353 1 45.8 ? C4' SAM 301 C 1 HETATM 12 O O4' SAM . . . F 2 14.612 33.376 14.44 1 43.99 ? O4' SAM 301 C 1 HETATM 13 C C3' SAM . . . F 2 15.56 34.87 12.852 1 45.54 ? C3' SAM 301 C 1 HETATM 14 O O3' SAM . . . F 2 14.932 34.923 11.578 1 43.19 ? O3' SAM 301 C 1 HETATM 15 C C2' SAM . . . F 2 14.763 35.62 13.923 1 44.72 ? C2' SAM 301 C 1 HETATM 16 O O2' SAM . . . F 2 14.112 36.746 13.382 1 48 ? O2' SAM 301 C 1 HETATM 17 C C1' SAM . . . F 2 13.804 34.52 14.359 1 42.63 ? C1' SAM 301 C 1 HETATM 18 N N9 SAM . . . F 2 13.15 34.742 15.644 1 41.14 ? N9 SAM 301 C 1 HETATM 19 C C8 SAM . . . F 2 13.662 35.367 16.755 1 39.96 ? C8 SAM 301 C 1 HETATM 20 N N7 SAM . . . F 2 12.811 35.439 17.75 1 38.31 ? N7 SAM 301 C 1 HETATM 21 C C5 SAM . . . F 2 11.667 34.835 17.26 1 36.05 ? C5 SAM 301 C 1 HETATM 22 C C6 SAM . . . F 2 10.408 34.617 17.834 1 37.54 ? C6 SAM 301 C 1 HETATM 23 N N6 SAM . . . F 2 10.098 34.998 19.068 1 37.37 ? N6 SAM 301 C 1 HETATM 24 N N1 SAM . . . F 2 9.475 33.991 17.076 1 39.63 ? N1 SAM 301 C 1 HETATM 25 C C2 SAM . . . F 2 9.798 33.624 15.827 1 38.09 ? C2 SAM 301 C 1 HETATM 26 N N3 SAM . . . F 2 10.95 33.778 15.182 1 38.23 ? N3 SAM 301 C 1 HETATM 27 C C4 SAM . . . F 2 11.858 34.396 15.966 1 38.91 ? C4 SAM 301 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #