data_7CWA # _model_server_result.job_id gZJACELt1gNpTe9wW8JZQQ _model_server_result.datetime_utc '2024-12-21 16:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 7CWA # _exptl.entry_id 7CWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.677 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CWA _cell.length_a 76.261 _cell.length_b 132.246 _cell.length_c 101.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 528 1_555 A SG CYS 52 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD2 ASP 116 A ASP 597 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A OE2 GLU 145 A GLU 626 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A OD1 ASP 245 A ASP 726 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc6 C MG MG . A MG 902 1_555 E O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc7 C MG MG . A MG 902 1_555 E O HOH . A HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc8 C MG MG . A MG 902 1_555 E O HOH . A HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C10 H11 Cl F N5 O3' _chem_comp.formula_weight 303.677 _chem_comp.id CFB _chem_comp.mon_nstd_flag . _chem_comp.name '2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CLOFARABINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' CFB sing 70 n n O5' H5' CFB sing 71 n n C5' C4' CFB sing 72 n n C5' "H5'1" CFB sing 73 n n C5' "H5'2" CFB sing 74 n n C4' O4' CFB sing 75 n n C4' C3' CFB sing 76 n n C4' H4' CFB sing 77 n n O4' C1' CFB sing 78 n n C3' O3' CFB sing 79 n n C3' C2' CFB sing 80 n n C3' H3' CFB sing 81 n n O3' H1 CFB sing 82 n n C2' F CFB sing 83 n n C2' C1' CFB sing 84 n n C2' H2' CFB sing 85 n n C1' N9 CFB sing 86 n n C1' H1' CFB sing 87 n n N9 C8 CFB sing 88 n y N9 C4 CFB sing 89 n y C8 N7 CFB doub 90 n y C8 H8 CFB sing 91 n n N7 C5 CFB sing 92 n y C5 C4 CFB doub 93 n y C5 C6 CFB sing 94 n y C4 N3 CFB sing 95 n y N3 C2 CFB doub 96 n y C2 CL CFB sing 97 n n C2 N1 CFB sing 98 n y N1 C6 CFB doub 99 n y C6 N6 CFB sing 100 n n N6 HN61 CFB sing 101 n n N6 HN62 CFB sing 102 n n # _atom_sites.entry_id 7CWA _atom_sites.fract_transf_matrix[1][1] 0.013113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 1 ZN ZN . C 3 MG A 1 902 2 MG MG . D 4 CFB A 1 903 1 CFB XXX . E 5 HOH A 1 1001 40 HOH HOH . E 5 HOH A 2 1002 32 HOH HOH . E 5 HOH A 3 1003 43 HOH HOH . E 5 HOH A 4 1004 13 HOH HOH . E 5 HOH A 5 1005 39 HOH HOH . E 5 HOH A 6 1006 44 HOH HOH . E 5 HOH A 7 1007 30 HOH HOH . E 5 HOH A 8 1008 42 HOH HOH . E 5 HOH A 9 1009 7 HOH HOH . E 5 HOH A 10 1010 9 HOH HOH . E 5 HOH A 11 1011 21 HOH HOH . E 5 HOH A 12 1012 18 HOH HOH . E 5 HOH A 13 1013 31 HOH HOH . E 5 HOH A 14 1014 16 HOH HOH . E 5 HOH A 15 1015 2 HOH HOH . E 5 HOH A 16 1016 33 HOH HOH . E 5 HOH A 17 1017 19 HOH HOH . E 5 HOH A 18 1018 10 HOH HOH . E 5 HOH A 19 1019 26 HOH HOH . E 5 HOH A 20 1020 3 HOH HOH . E 5 HOH A 21 1021 20 HOH HOH . E 5 HOH A 22 1022 35 HOH HOH . E 5 HOH A 23 1023 38 HOH HOH . E 5 HOH A 24 1024 4 HOH HOH . E 5 HOH A 25 1025 17 HOH HOH . E 5 HOH A 26 1026 41 HOH HOH . E 5 HOH A 27 1027 11 HOH HOH . E 5 HOH A 28 1028 14 HOH HOH . E 5 HOH A 29 1029 15 HOH HOH . E 5 HOH A 30 1030 23 HOH HOH . E 5 HOH A 31 1031 27 HOH HOH . E 5 HOH A 32 1032 22 HOH HOH . E 5 HOH A 33 1033 25 HOH HOH . E 5 HOH A 34 1034 12 HOH HOH . E 5 HOH A 35 1035 1 HOH HOH . E 5 HOH A 36 1036 6 HOH HOH . E 5 HOH A 37 1037 28 HOH HOH . E 5 HOH A 38 1038 5 HOH HOH . E 5 HOH A 39 1039 8 HOH HOH . E 5 HOH A 40 1040 37 HOH HOH . E 5 HOH A 41 1041 29 HOH HOH . E 5 HOH A 42 1042 36 HOH HOH . E 5 HOH A 43 1043 24 HOH HOH . E 5 HOH A 44 1044 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' CFB . . . D 4 -0.881 17.082 5.3 1 33.06 ? O5' CFB 903 A 1 HETATM 2 C C5' CFB . . . D 4 -2.154 17.175 5.926 1 33.13 ? C5' CFB 903 A 1 HETATM 3 C C4' CFB . . . D 4 -2.048 17.064 7.43 1 33.08 ? C4' CFB 903 A 1 HETATM 4 O O4' CFB . . . D 4 -1.398 18.246 7.95 1 32.88 ? O4' CFB 903 A 1 HETATM 5 C C3' CFB . . . D 4 -3.383 16.928 8.172 1 32.89 ? C3' CFB 903 A 1 HETATM 6 O O3' CFB . . . D 4 -3.335 15.879 9.131 1 32.74 ? O3' CFB 903 A 1 HETATM 7 C C2' CFB . . . D 4 -3.552 18.277 8.853 1 32.87 ? C2' CFB 903 A 1 HETATM 8 F F CFB . . . D 4 -4.239 19.149 8 1 32.77 ? F CFB 903 A 1 HETATM 9 C C1' CFB . . . D 4 -2.118 18.745 9.058 1 33.08 ? C1' CFB 903 A 1 HETATM 10 N N9 CFB . . . D 4 -1.936 20.194 9.102 1 33.52 ? N9 CFB 903 A 1 HETATM 11 C C8 CFB . . . D 4 -2.04 21.072 8.056 1 33.63 ? C8 CFB 903 A 1 HETATM 12 N N7 CFB . . . D 4 -1.757 22.313 8.369 1 33.71 ? N7 CFB 903 A 1 HETATM 13 C C5 CFB . . . D 4 -1.448 22.247 9.719 1 33.67 ? C5 CFB 903 A 1 HETATM 14 C C4 CFB . . . D 4 -1.563 20.951 10.187 1 33.78 ? C4 CFB 903 A 1 HETATM 15 N N3 CFB . . . D 4 -1.33 20.533 11.436 1 34.11 ? N3 CFB 903 A 1 HETATM 16 C C2 CFB . . . D 4 -0.952 21.544 12.206 1 34.24 ? C2 CFB 903 A 1 HETATM 17 CL CL CFB . . . D 4 -0.605 21.112 13.85 1 34.95 ? CL CFB 903 A 1 HETATM 18 N N1 CFB . . . D 4 -0.786 22.831 11.921 1 34.1 ? N1 CFB 903 A 1 HETATM 19 C C6 CFB . . . D 4 -1.032 23.216 10.649 1 33.85 ? C6 CFB 903 A 1 HETATM 20 N N6 CFB . . . D 4 -0.843 24.504 10.344 1 34.12 ? N6 CFB 903 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #