data_7CWZ
#
_model_server_result.job_id            rAy6twCskT-hh3Mu0oxfnQ 
_model_server_result.datetime_utc      '2024-11-05 01:21:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cwz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":702}' 
#
_entry.id    7CWZ 
#
_exptl.entry_id    7CWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7CWZ 
_cell.length_a            133.314 
_cell.length_b            133.314 
_cell.length_c            390.631 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1,2 
B,C,G,H,I,J,K,M,N 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C4A PLP . A PLP 702 1_555 F N1 LDP . A LDP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.249 ? 
covale ? covale2 H C4A PLP . B PLP 702 1_555 I N1 LDP . B LDP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.24 ? 
covale ? covale3 J C4A PLP . C PLP 701 1_555 K N1 LDP . C LDP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? 
metalc ? metalc1 A OD1 ASP 550 A ASP 550 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 269 n y 
N1 C6 PLP sing 270 n y 
C2 C2A PLP sing 271 n n 
C2 C3 PLP sing 272 n y 
C2A H2A1 PLP sing 273 n n 
C2A H2A2 PLP sing 274 n n 
C2A H2A3 PLP sing 275 n n 
C3 O3 PLP sing 276 n n 
C3 C4 PLP doub 277 n y 
O3 HO3 PLP sing 278 n n 
C4 C4A PLP sing 279 n n 
C4 C5 PLP sing 280 n y 
C4A O4A PLP doub 281 n n 
C4A H4A PLP sing 282 n n 
C5 C6 PLP doub 283 n y 
C5 C5A PLP sing 284 n n 
C6 H6 PLP sing 285 n n 
C5A O4P PLP sing 286 n n 
C5A H5A1 PLP sing 287 n n 
C5A H5A2 PLP sing 288 n n 
O4P P PLP sing 289 n n 
P O1P PLP doub 290 n n 
P O2P PLP sing 291 n n 
P O3P PLP sing 292 n n 
O2P HOP2 PLP sing 293 n n 
O3P HOP3 PLP sing 294 n n 
#
_atom_sites.entry_id                     7CWZ 
_atom_sites.fract_transf_matrix[1][1]    0.007501 
_atom_sites.fract_transf_matrix[1][2]    0.004331 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008662 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MG A 1 701 1 MG MG . 
E 3 PLP A 1 702 701 PLP PDP . 
F 4 LDP A 1 703 701 LDP PDP . 
G 2 MG B 1 701 2 MG MG . 
H 3 PLP B 1 702 701 PLP PDP . 
I 4 LDP B 1 703 701 LDP PDP . 
J 3 PLP C 1 701 701 PLP PDP . 
K 4 LDP C 1 702 701 LDP PDP . 
L 5 HOH A 1 801 30 HOH HOH . 
L 5 HOH A 2 802 27 HOH HOH . 
L 5 HOH A 3 803 14 HOH HOH . 
L 5 HOH A 4 804 11 HOH HOH . 
L 5 HOH A 5 805 29 HOH HOH . 
L 5 HOH A 6 806 21 HOH HOH . 
L 5 HOH A 7 807 52 HOH HOH . 
L 5 HOH A 8 808 28 HOH HOH . 
L 5 HOH A 9 809 7 HOH HOH . 
L 5 HOH A 10 810 4 HOH HOH . 
L 5 HOH A 11 811 59 HOH HOH . 
L 5 HOH A 12 812 3 HOH HOH . 
L 5 HOH A 13 813 34 HOH HOH . 
L 5 HOH A 14 814 37 HOH HOH . 
L 5 HOH A 15 815 42 HOH HOH . 
L 5 HOH A 16 816 43 HOH HOH . 
L 5 HOH A 17 817 26 HOH HOH . 
M 5 HOH B 1 801 50 HOH HOH . 
M 5 HOH B 2 802 16 HOH HOH . 
M 5 HOH B 3 803 22 HOH HOH . 
M 5 HOH B 4 804 60 HOH HOH . 
M 5 HOH B 5 805 25 HOH HOH . 
M 5 HOH B 6 806 61 HOH HOH . 
M 5 HOH B 7 807 44 HOH HOH . 
M 5 HOH B 8 808 48 HOH HOH . 
M 5 HOH B 9 809 18 HOH HOH . 
M 5 HOH B 10 810 9 HOH HOH . 
M 5 HOH B 11 811 38 HOH HOH . 
M 5 HOH B 12 812 15 HOH HOH . 
M 5 HOH B 13 813 10 HOH HOH . 
M 5 HOH B 14 814 12 HOH HOH . 
M 5 HOH B 15 815 13 HOH HOH . 
M 5 HOH B 16 816 19 HOH HOH . 
M 5 HOH B 17 817 39 HOH HOH . 
M 5 HOH B 18 818 62 HOH HOH . 
N 5 HOH C 1 801 41 HOH HOH . 
N 5 HOH C 2 802 23 HOH HOH . 
N 5 HOH C 3 803 1 HOH HOH . 
N 5 HOH C 4 804 32 HOH HOH . 
N 5 HOH C 5 805 2 HOH HOH . 
N 5 HOH C 6 806 20 HOH HOH . 
N 5 HOH C 7 807 36 HOH HOH . 
N 5 HOH C 8 808 57 HOH HOH . 
N 5 HOH C 9 809 6 HOH HOH . 
N 5 HOH C 10 810 64 HOH HOH . 
N 5 HOH C 11 811 40 HOH HOH . 
N 5 HOH C 12 812 66 HOH HOH . 
N 5 HOH C 13 813 17 HOH HOH . 
N 5 HOH C 14 814 56 HOH HOH . 
N 5 HOH C 15 815 24 HOH HOH . 
N 5 HOH C 16 816 55 HOH HOH . 
N 5 HOH C 17 817 31 HOH HOH . 
N 5 HOH C 18 818 35 HOH HOH . 
N 5 HOH C 19 819 46 HOH HOH . 
N 5 HOH C 20 820 63 HOH HOH . 
N 5 HOH C 21 821 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 3 -52.629 -6.659 12.533 1 48.76 ? N1 PLP 702 A 1 
HETATM 2 C C2 PLP . . . E 3 -53.044 -7.632 13.321 1 53.52 ? C2 PLP 702 A 1 
HETATM 3 C C2A PLP . . . E 3 -52.656 -7.621 14.797 1 52.41 ? C2A PLP 702 A 1 
HETATM 4 C C3 PLP . . . E 3 -53.834 -8.659 12.82 1 54.09 ? C3 PLP 702 A 1 
HETATM 5 O O3 PLP . . . E 3 -54.3 -9.705 13.626 1 52.47 ? O3 PLP 702 A 1 
HETATM 6 C C4 PLP . . . E 3 -54.21 -8.666 11.497 1 51.73 ? C4 PLP 702 A 1 
HETATM 7 C C4A PLP . . . E 3 -55.057 -9.836 11.007 1 54.77 ? C4A PLP 702 A 1 
HETATM 8 C C5 PLP . . . E 3 -53.732 -7.646 10.682 1 53.47 ? C5 PLP 702 A 1 
HETATM 9 C C6 PLP . . . E 3 -52.955 -6.646 11.255 1 52.03 ? C6 PLP 702 A 1 
HETATM 10 C C5A PLP . . . E 3 -54.089 -7.559 9.2 1 52.66 ? C5A PLP 702 A 1 
HETATM 11 O O4P PLP . . . E 3 -55.007 -6.513 9.092 1 52.22 ? O4P PLP 702 A 1 
HETATM 12 P P PLP . . . E 3 -55.885 -6.337 7.718 1 61.29 ? P PLP 702 A 1 
HETATM 13 O O1P PLP . . . E 3 -55.026 -5.76 6.626 1 48.18 -1 O1P PLP 702 A 1 
HETATM 14 O O2P PLP . . . E 3 -56.405 -7.69 7.301 1 46.48 -1 O2P PLP 702 A 1 
HETATM 15 O O3P PLP . . . E 3 -57.016 -5.384 8.004 1 45.6 ? O3P PLP 702 A 1 
HETATM 16 H H2A1 PLP . . . E 3 -53.548 -7.745 15.406 1 62.9 ? H2A1 PLP 702 A 1 
HETATM 17 H H2A2 PLP . . . E 3 -52.18 -6.674 15.04 1 62.9 ? H2A2 PLP 702 A 1 
HETATM 18 H H2A3 PLP . . . E 3 -51.965 -8.436 14.996 1 62.9 ? H2A3 PLP 702 A 1 
HETATM 19 H HO3 PLP . . . E 3 -53.576 -10.196 13.967 1 62.96 ? HO3 PLP 702 A 1 
HETATM 20 H H4A PLP . . . E 3 -54.621 -10.828 10.979 1 65.73 ? H4A PLP 702 A 1 
HETATM 21 H H6 PLP . . . E 3 -52.608 -5.83 10.633 1 62.44 ? H6 PLP 702 A 1 
HETATM 22 H H5A1 PLP . . . E 3 -53.203 -7.346 8.61 1 63.19 ? H5A1 PLP 702 A 1 
HETATM 23 H H5A2 PLP . . . E 3 -54.536 -8.489 8.864 1 63.19 ? H5A2 PLP 702 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#