data_7CWZ # _model_server_result.job_id t1rpGEztMqf1wOtIAdEjCg _model_server_result.datetime_utc '2024-11-05 01:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 7CWZ # _exptl.entry_id 7CWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.178 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CWZ _cell.length_a 133.314 _cell.length_b 133.314 _cell.length_c 390.631 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1,2 B,C,G,H,I,J,K,M,N 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C4A PLP . A PLP 702 1_555 F N1 LDP . A LDP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.249 ? covale ? covale2 H C4A PLP . B PLP 702 1_555 I N1 LDP . B LDP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.24 ? covale ? covale3 J C4A PLP . C PLP 701 1_555 K N1 LDP . C LDP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? metalc ? metalc1 A OD1 ASP 550 A ASP 550 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 160 n n C7 C8 LDP sing 161 n n C7 H71 LDP sing 162 n n C7 H72 LDP sing 163 n n C1 C2 LDP doub 164 n y C1 C6 LDP sing 165 n y C4 C5 LDP sing 166 n y C4 C3 LDP doub 167 n y C4 O2 LDP sing 168 n n C2 C3 LDP sing 169 n y C2 H2 LDP sing 170 n n C6 C5 LDP doub 171 n y C6 H6 LDP sing 172 n n C5 H5 LDP sing 173 n n C3 O1 LDP sing 174 n n O1 HO1 LDP sing 175 n n O2 HO2 LDP sing 176 n n C8 N1 LDP sing 177 n n C8 H81 LDP sing 178 n n C8 H82 LDP sing 179 n n N1 HN11 LDP sing 180 n n N1 HN12 LDP sing 181 n n # _atom_sites.entry_id 7CWZ _atom_sites.fract_transf_matrix[1][1] 0.007501 _atom_sites.fract_transf_matrix[1][2] 0.004331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 701 1 MG MG . E 3 PLP A 1 702 701 PLP PDP . F 4 LDP A 1 703 701 LDP PDP . G 2 MG B 1 701 2 MG MG . H 3 PLP B 1 702 701 PLP PDP . I 4 LDP B 1 703 701 LDP PDP . J 3 PLP C 1 701 701 PLP PDP . K 4 LDP C 1 702 701 LDP PDP . L 5 HOH A 1 801 30 HOH HOH . L 5 HOH A 2 802 27 HOH HOH . L 5 HOH A 3 803 14 HOH HOH . L 5 HOH A 4 804 11 HOH HOH . L 5 HOH A 5 805 29 HOH HOH . L 5 HOH A 6 806 21 HOH HOH . L 5 HOH A 7 807 52 HOH HOH . L 5 HOH A 8 808 28 HOH HOH . L 5 HOH A 9 809 7 HOH HOH . L 5 HOH A 10 810 4 HOH HOH . L 5 HOH A 11 811 59 HOH HOH . L 5 HOH A 12 812 3 HOH HOH . L 5 HOH A 13 813 34 HOH HOH . L 5 HOH A 14 814 37 HOH HOH . L 5 HOH A 15 815 42 HOH HOH . L 5 HOH A 16 816 43 HOH HOH . L 5 HOH A 17 817 26 HOH HOH . M 5 HOH B 1 801 50 HOH HOH . M 5 HOH B 2 802 16 HOH HOH . M 5 HOH B 3 803 22 HOH HOH . M 5 HOH B 4 804 60 HOH HOH . M 5 HOH B 5 805 25 HOH HOH . M 5 HOH B 6 806 61 HOH HOH . M 5 HOH B 7 807 44 HOH HOH . M 5 HOH B 8 808 48 HOH HOH . M 5 HOH B 9 809 18 HOH HOH . M 5 HOH B 10 810 9 HOH HOH . M 5 HOH B 11 811 38 HOH HOH . M 5 HOH B 12 812 15 HOH HOH . M 5 HOH B 13 813 10 HOH HOH . M 5 HOH B 14 814 12 HOH HOH . M 5 HOH B 15 815 13 HOH HOH . M 5 HOH B 16 816 19 HOH HOH . M 5 HOH B 17 817 39 HOH HOH . M 5 HOH B 18 818 62 HOH HOH . N 5 HOH C 1 801 41 HOH HOH . N 5 HOH C 2 802 23 HOH HOH . N 5 HOH C 3 803 1 HOH HOH . N 5 HOH C 4 804 32 HOH HOH . N 5 HOH C 5 805 2 HOH HOH . N 5 HOH C 6 806 20 HOH HOH . N 5 HOH C 7 807 36 HOH HOH . N 5 HOH C 8 808 57 HOH HOH . N 5 HOH C 9 809 6 HOH HOH . N 5 HOH C 10 810 64 HOH HOH . N 5 HOH C 11 811 40 HOH HOH . N 5 HOH C 12 812 66 HOH HOH . N 5 HOH C 13 813 17 HOH HOH . N 5 HOH C 14 814 56 HOH HOH . N 5 HOH C 15 815 24 HOH HOH . N 5 HOH C 16 816 55 HOH HOH . N 5 HOH C 17 817 31 HOH HOH . N 5 HOH C 18 818 35 HOH HOH . N 5 HOH C 19 819 46 HOH HOH . N 5 HOH C 20 820 63 HOH HOH . N 5 HOH C 21 821 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . I 4 -16.508 20.914 53.767 1 47.54 ? C7 LDP 703 B 1 HETATM 2 C C1 LDP . . . I 4 -15.563 20.011 54.546 1 47.49 ? C1 LDP 703 B 1 HETATM 3 C C4 LDP . . . I 4 -13.584 18.51 55.736 1 46.28 ? C4 LDP 703 B 1 HETATM 4 C C2 LDP . . . I 4 -15.873 19.273 55.684 1 47.82 ? C2 LDP 703 B 1 HETATM 5 C C6 LDP . . . I 4 -14.288 19.997 54.024 1 47.66 ? C6 LDP 703 B 1 HETATM 6 C C5 LDP . . . I 4 -13.299 19.249 54.611 1 46.22 ? C5 LDP 703 B 1 HETATM 7 C C3 LDP . . . I 4 -14.864 18.512 56.276 1 46 ? C3 LDP 703 B 1 HETATM 8 O O1 LDP . . . I 4 -15.107 17.736 57.416 1 45.68 ? O1 LDP 703 B 1 HETATM 9 O O2 LDP . . . I 4 -12.552 17.757 56.313 1 44.52 ? O2 LDP 703 B 1 HETATM 10 C C8 LDP . . . I 4 -17.607 20.19 53.022 1 52.45 ? C8 LDP 703 B 1 HETATM 11 N N1 LDP . . . I 4 -18.219 21.184 52.168 1 55.68 ? N1 LDP 703 B 1 HETATM 12 H H71 LDP . . . I 4 -16.969 21.605 54.464 1 57.05 ? H71 LDP 703 B 1 HETATM 13 H H72 LDP . . . I 4 -15.924 21.477 53.047 1 57.05 ? H72 LDP 703 B 1 HETATM 14 H H2 LDP . . . I 4 -16.873 19.288 56.1 1 57.38 ? H2 LDP 703 B 1 HETATM 15 H H6 LDP . . . I 4 -14.064 20.583 53.14 1 57.19 ? H6 LDP 703 B 1 HETATM 16 H H5 LDP . . . I 4 -12.299 19.24 54.191 1 55.47 ? H5 LDP 703 B 1 HETATM 17 H HO1 LDP . . . I 4 -14.317 17.26 57.637 1 54.81 ? HO1 LDP 703 B 1 HETATM 18 H HO2 LDP . . . I 4 -11.83 17.705 55.704 1 53.42 ? HO2 LDP 703 B 1 HETATM 19 H H81 LDP . . . I 4 -17.192 19.384 52.426 1 62.94 ? H81 LDP 703 B 1 HETATM 20 H H82 LDP . . . I 4 -18.335 19.789 53.718 1 62.94 ? H82 LDP 703 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #