data_7CX0
#
_model_server_result.job_id            iuOcVCaZnh-LOlBrBycGjA 
_model_server_result.datetime_utc      '2025-01-25 11:13:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cx0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":701}' 
#
_entry.id    7CX0 
#
_exptl.entry_id    7CX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7CX0 
_cell.length_a            131.696 
_cell.length_b            131.696 
_cell.length_c            390.014 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1,2 
B,C,F,G,H,I,K,L 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C4A PLP . A PLP 701 1_555 E N 142 . A 142 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? 
covale ? covale2 F C4A PLP . B PLP 701 1_555 G N 142 . B 142 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? 
covale ? covale3 H C4A PLP . C PLP 701 1_555 I N 142 . C 142 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 277 n y 
N1 C6 PLP sing 278 n y 
C2 C2A PLP sing 279 n n 
C2 C3 PLP sing 280 n y 
C2A H2A1 PLP sing 281 n n 
C2A H2A2 PLP sing 282 n n 
C2A H2A3 PLP sing 283 n n 
C3 O3 PLP sing 284 n n 
C3 C4 PLP doub 285 n y 
O3 HO3 PLP sing 286 n n 
C4 C4A PLP sing 287 n n 
C4 C5 PLP sing 288 n y 
C4A O4A PLP doub 289 n n 
C4A H4A PLP sing 290 n n 
C5 C6 PLP doub 291 n y 
C5 C5A PLP sing 292 n n 
C6 H6 PLP sing 293 n n 
C5A O4P PLP sing 294 n n 
C5A H5A1 PLP sing 295 n n 
C5A H5A2 PLP sing 296 n n 
O4P P PLP sing 297 n n 
P O1P PLP doub 298 n n 
P O2P PLP sing 299 n n 
P O3P PLP sing 300 n n 
O2P HOP2 PLP sing 301 n n 
O3P HOP3 PLP sing 302 n n 
#
_atom_sites.entry_id                     7CX0 
_atom_sites.fract_transf_matrix[1][1]    0.007593 
_atom_sites.fract_transf_matrix[1][2]    0.004384 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PLP A 1 701 701 PLP PCB . 
E 3 142 A 1 702 701 142 PCB . 
F 2 PLP B 1 701 701 PLP PCB . 
G 3 142 B 1 702 701 142 PCB . 
H 2 PLP C 1 701 701 PLP PCB . 
I 3 142 C 1 702 701 142 PCB . 
J 4 HOH A 1 801 19 HOH HOH . 
J 4 HOH A 2 802 22 HOH HOH . 
J 4 HOH A 3 803 21 HOH HOH . 
J 4 HOH A 4 804 40 HOH HOH . 
J 4 HOH A 5 805 42 HOH HOH . 
J 4 HOH A 6 806 2 HOH HOH . 
J 4 HOH A 7 807 3 HOH HOH . 
J 4 HOH A 8 808 26 HOH HOH . 
J 4 HOH A 9 809 46 HOH HOH . 
J 4 HOH A 10 810 23 HOH HOH . 
J 4 HOH A 11 811 44 HOH HOH . 
J 4 HOH A 12 812 7 HOH HOH . 
J 4 HOH A 13 813 12 HOH HOH . 
J 4 HOH A 14 814 24 HOH HOH . 
K 4 HOH B 1 801 41 HOH HOH . 
K 4 HOH B 2 802 34 HOH HOH . 
K 4 HOH B 3 803 18 HOH HOH . 
K 4 HOH B 4 804 51 HOH HOH . 
K 4 HOH B 5 805 4 HOH HOH . 
K 4 HOH B 6 806 28 HOH HOH . 
K 4 HOH B 7 807 47 HOH HOH . 
K 4 HOH B 8 808 9 HOH HOH . 
K 4 HOH B 9 809 13 HOH HOH . 
K 4 HOH B 10 810 20 HOH HOH . 
L 4 HOH C 1 801 1 HOH HOH . 
L 4 HOH C 2 802 8 HOH HOH . 
L 4 HOH C 3 803 11 HOH HOH . 
L 4 HOH C 4 804 6 HOH HOH . 
L 4 HOH C 5 805 5 HOH HOH . 
L 4 HOH C 6 806 36 HOH HOH . 
L 4 HOH C 7 807 48 HOH HOH . 
L 4 HOH C 8 808 45 HOH HOH . 
L 4 HOH C 9 809 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . H 2 -24.418 42.485 69.933 1 54 ? N1 PLP 701 C 1 
HETATM 2 C C2 PLP . . . H 2 -23.861 43.639 70.181 1 57.31 ? C2 PLP 701 C 1 
HETATM 3 C C2A PLP . . . H 2 -24.282 44.324 71.48 1 52.4 ? C2A PLP 701 C 1 
HETATM 4 C C3 PLP . . . H 2 -22.941 44.182 69.297 1 60.6 ? C3 PLP 701 C 1 
HETATM 5 O O3 PLP . . . H 2 -22.329 45.411 69.534 1 63.94 ? O3 PLP 701 C 1 
HETATM 6 C C4 PLP . . . H 2 -22.636 43.47 68.152 1 53.69 ? C4 PLP 701 C 1 
HETATM 7 C C4A PLP . . . H 2 -21.641 44.018 67.138 1 58.78 ? C4A PLP 701 C 1 
HETATM 8 C C5 PLP . . . H 2 -23.254 42.245 67.912 1 57.04 ? C5 PLP 701 C 1 
HETATM 9 C C6 PLP . . . H 2 -24.15 41.793 68.859 1 56.55 ? C6 PLP 701 C 1 
HETATM 10 C C5A PLP . . . H 2 -22.971 41.382 66.679 1 56.22 ? C5A PLP 701 C 1 
HETATM 11 O O4P PLP . . . H 2 -21.758 40.736 66.921 1 57.32 ? O4P PLP 701 C 1 
HETATM 12 P P PLP . . . H 2 -20.618 40.566 65.759 1 60.55 ? P PLP 701 C 1 
HETATM 13 O O1P PLP . . . H 2 -21.205 40.037 64.492 1 50.62 -1 O1P PLP 701 C 1 
HETATM 14 O O2P PLP . . . H 2 -19.612 39.577 66.224 1 55.21 -1 O2P PLP 701 C 1 
HETATM 15 O O3P PLP . . . H 2 -19.942 41.875 65.518 1 53.76 ? O3P PLP 701 C 1 
HETATM 16 H H2A1 PLP . . . H 2 -23.559 45.069 71.799 1 62.87 ? H2A1 PLP 701 C 1 
HETATM 17 H H2A2 PLP . . . H 2 -25.249 44.798 71.34 1 62.87 ? H2A2 PLP 701 C 1 
HETATM 18 H H2A3 PLP . . . H 2 -24.372 43.572 72.257 1 62.87 ? H2A3 PLP 701 C 1 
HETATM 19 H HO3 PLP . . . H 2 -21.547 45.282 70.046 1 76.72 ? HO3 PLP 701 C 1 
HETATM 20 H H4A PLP . . . H 2 -21.929 44.063 66.099 1 70.52 ? H4A PLP 701 C 1 
HETATM 21 H H6 PLP . . . H 2 -24.651 40.842 68.726 1 67.85 ? H6 PLP 701 C 1 
HETATM 22 H H5A1 PLP . . . H 2 -22.933 41.958 65.764 1 67.46 ? H5A1 PLP 701 C 1 
HETATM 23 H H5A2 PLP . . . H 2 -23.746 40.635 66.561 1 67.46 ? H5A2 PLP 701 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#