data_7CX2 # _model_server_result.job_id ez1omy29da6zbBwObRaDJw _model_server_result.datetime_utc '2025-03-05 22:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7CX2 # _exptl.entry_id 7CX2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 352.465 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CX2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 R CYS 109 1_555 A SG CYS 187 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 E SG CYS 22 N CYS 22 1_555 E SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 99 N CYS 99 1_555 E SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H32 O5' _chem_comp.formula_weight 352.465 _chem_comp.id P2E _chem_comp.mon_nstd_flag . _chem_comp.name '(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Prostaglandin E2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 P2E sing 237 n n C2 C1 P2E sing 238 n n C3 C4 P2E sing 239 n n C4 C5 P2E sing 240 n n C5 C6 P2E doub 241 n n C6 C7 P2E sing 242 n n C7 C8 P2E sing 243 n n C8 C9 P2E sing 244 n n C8 C12 P2E sing 245 n n C9 O3 P2E doub 246 n n C9 C10 P2E sing 247 z n C12 C11 P2E sing 248 n n C12 C13 P2E sing 249 n n C11 O4 P2E sing 250 n n C11 C10 P2E sing 251 n n C13 C14 P2E doub 252 n n C14 C15 P2E sing 253 n n C15 O5 P2E sing 254 n n C15 C16 P2E sing 255 n n C16 C17 P2E sing 256 n n C17 C18 P2E sing 257 n n C18 C19 P2E sing 258 n n C19 C20 P2E sing 259 n n O1 C1 P2E doub 260 n n C1 O2 P2E sing 261 n n C2 H2 P2E sing 262 n n C2 H2A P2E sing 263 n n C3 H3 P2E sing 264 n n C3 H3A P2E sing 265 n n C4 H4 P2E sing 266 n n C4 H4A P2E sing 267 n n C5 H5 P2E sing 268 e n C6 H6 P2E sing 269 n n C7 H7 P2E sing 270 n n C7 H7A P2E sing 271 n n C8 H8 P2E sing 272 n n C12 H12 P2E sing 273 n n C11 H11 P2E sing 274 n n O4 HO4 P2E sing 275 n n C10 H10 P2E sing 276 n n C10 H10A P2E sing 277 n n C13 H13 P2E sing 278 n n C14 H14 P2E sing 279 n n C15 H15 P2E sing 280 n n O5 HO5 P2E sing 281 n n C16 H16 P2E sing 282 n n C16 H16A P2E sing 283 n n C17 H17 P2E sing 284 n n C17 H17A P2E sing 285 n n C18 H18 P2E sing 286 n n C18 H18A P2E sing 287 n n C19 H19 P2E sing 288 n n C19 H19A P2E sing 289 n n C20 H20 P2E sing 290 n n C20 H20A P2E sing 291 n n C20 H20B P2E sing 292 n n O2 HO2 P2E sing 293 n n # _atom_sites.entry_id 7CX2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 P2E R 1 401 1 P2E PGE . G 7 HOH R 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 P2E . . . F 6 79.955 118.734 123.665 1 119.39 ? C2 P2E 401 R 1 HETATM 2 C C3 P2E . . . F 6 80.646 117.635 122.863 1 119.39 ? C3 P2E 401 R 1 HETATM 3 C C4 P2E . . . F 6 82.157 117.759 123.031 1 119.39 ? C4 P2E 401 R 1 HETATM 4 C C5 P2E . . . F 6 82.853 117.066 121.866 1 119.39 ? C5 P2E 401 R 1 HETATM 5 C C6 P2E . . . F 6 82.657 115.744 121.862 1 119.39 ? C6 P2E 401 R 1 HETATM 6 C C7 P2E . . . F 6 83.265 115.081 120.632 1 119.39 ? C7 P2E 401 R 1 HETATM 7 C C8 P2E . . . F 6 83.004 113.527 120.676 1 119.39 ? C8 P2E 401 R 1 HETATM 8 C C9 P2E . . . F 6 81.591 113.289 120.578 1 119.39 ? C9 P2E 401 R 1 HETATM 9 O O3 P2E . . . F 6 80.815 113.86 121.262 1 119.39 ? O3 P2E 401 R 1 HETATM 10 C C12 P2E . . . F 6 83.577 112.901 119.442 1 119.39 ? C12 P2E 401 R 1 HETATM 11 C C11 P2E . . . F 6 82.552 111.819 119.003 1 119.39 ? C11 P2E 401 R 1 HETATM 12 O O4 P2E . . . F 6 82.502 111.747 117.676 1 119.39 ? O4 P2E 401 R 1 HETATM 13 C C10 P2E . . . F 6 81.139 112.299 119.574 1 119.39 ? C10 P2E 401 R 1 HETATM 14 C C13 P2E . . . F 6 84.92 112.274 119.721 1 119.39 ? C13 P2E 401 R 1 HETATM 15 C C14 P2E . . . F 6 85.933 113.112 119.465 1 119.39 ? C14 P2E 401 R 1 HETATM 16 C C15 P2E . . . F 6 87.068 112.472 118.67 1 119.39 ? C15 P2E 401 R 1 HETATM 17 O O5 P2E . . . F 6 86.537 111.546 117.767 1 119.39 ? O5 P2E 401 R 1 HETATM 18 C C16 P2E . . . F 6 87.815 113.56 117.903 1 119.39 ? C16 P2E 401 R 1 HETATM 19 C C17 P2E . . . F 6 88.448 112.975 116.642 1 119.39 ? C17 P2E 401 R 1 HETATM 20 C C18 P2E . . . F 6 89.159 114.084 115.87 1 119.39 ? C18 P2E 401 R 1 HETATM 21 C C19 P2E . . . F 6 89.697 113.531 114.553 1 119.39 ? C19 P2E 401 R 1 HETATM 22 C C20 P2E . . . F 6 89.899 114.679 113.569 1 119.39 ? C20 P2E 401 R 1 HETATM 23 O O1 P2E . . . F 6 78.465 117.282 124.886 1 119.39 ? O1 P2E 401 R 1 HETATM 24 C C1 P2E . . . F 6 78.572 118.257 124.1 1 119.39 ? C1 P2E 401 R 1 HETATM 25 O O2 P2E . . . F 6 77.539 118.833 123.674 1 119.39 ? O2 P2E 401 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #