data_7CXZ # _model_server_result.job_id 1he58Xc6PA8aaMmtvyyXgw _model_server_result.datetime_utc '2024-10-19 12:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7CXZ # _exptl.entry_id 7CXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.94 _cell.angle_gamma 90 _cell.entry_id 7CXZ _cell.length_a 91.073 _cell.length_b 46.82 _cell.length_c 56.126 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 28 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 A N HIS 2 A HIS 29 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc3 A N HIS 3 A HIS 30 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc4 A ND1 HIS 3 A HIS 30 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 A NE2 HIS 107 A HIS 134 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc6 A NE2 HIS 109 A HIS 136 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 A NE2 HIS 170 A HIS 197 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 B FE FE . A FE 301 1_555 C N TRS . A TRS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 B FE FE . A FE 301 1_555 C O1 TRS . A TRS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 B FE FE . A FE 301 1_555 C O2 TRS . A TRS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CXZ _atom_sites.fract_transf_matrix[1][1] 0.01098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 301 FE FE . C 3 TRS A 1 302 501 TRS TRS . D 4 NI A 1 303 601 NI NI . E 5 HOH A 1 401 47 HOH HOH . E 5 HOH A 2 402 190 HOH HOH . E 5 HOH A 3 403 127 HOH HOH . E 5 HOH A 4 404 90 HOH HOH . E 5 HOH A 5 405 94 HOH HOH . E 5 HOH A 6 406 257 HOH HOH . E 5 HOH A 7 407 224 HOH HOH . E 5 HOH A 8 408 21 HOH HOH . E 5 HOH A 9 409 112 HOH HOH . E 5 HOH A 10 410 166 HOH HOH . E 5 HOH A 11 411 242 HOH HOH . E 5 HOH A 12 412 239 HOH HOH . E 5 HOH A 13 413 63 HOH HOH . E 5 HOH A 14 414 258 HOH HOH . E 5 HOH A 15 415 194 HOH HOH . E 5 HOH A 16 416 136 HOH HOH . E 5 HOH A 17 417 83 HOH HOH . E 5 HOH A 18 418 11 HOH HOH . E 5 HOH A 19 419 148 HOH HOH . E 5 HOH A 20 420 81 HOH HOH . E 5 HOH A 21 421 86 HOH HOH . E 5 HOH A 22 422 120 HOH HOH . E 5 HOH A 23 423 220 HOH HOH . E 5 HOH A 24 424 57 HOH HOH . E 5 HOH A 25 425 146 HOH HOH . E 5 HOH A 26 426 138 HOH HOH . E 5 HOH A 27 427 18 HOH HOH . E 5 HOH A 28 428 283 HOH HOH . E 5 HOH A 29 429 5 HOH HOH . E 5 HOH A 30 430 211 HOH HOH . E 5 HOH A 31 431 121 HOH HOH . E 5 HOH A 32 432 153 HOH HOH . E 5 HOH A 33 433 23 HOH HOH . E 5 HOH A 34 434 236 HOH HOH . E 5 HOH A 35 435 100 HOH HOH . E 5 HOH A 36 436 174 HOH HOH . E 5 HOH A 37 437 93 HOH HOH . E 5 HOH A 38 438 76 HOH HOH . E 5 HOH A 39 439 34 HOH HOH . E 5 HOH A 40 440 281 HOH HOH . E 5 HOH A 41 441 70 HOH HOH . E 5 HOH A 42 442 221 HOH HOH . E 5 HOH A 43 443 24 HOH HOH . E 5 HOH A 44 444 139 HOH HOH . E 5 HOH A 45 445 130 HOH HOH . E 5 HOH A 46 446 7 HOH HOH . E 5 HOH A 47 447 95 HOH HOH . E 5 HOH A 48 448 201 HOH HOH . E 5 HOH A 49 449 60 HOH HOH . E 5 HOH A 50 450 8 HOH HOH . E 5 HOH A 51 451 126 HOH HOH . E 5 HOH A 52 452 39 HOH HOH . E 5 HOH A 53 453 85 HOH HOH . E 5 HOH A 54 454 14 HOH HOH . E 5 HOH A 55 455 284 HOH HOH . E 5 HOH A 56 456 206 HOH HOH . E 5 HOH A 57 457 244 HOH HOH . E 5 HOH A 58 458 71 HOH HOH . E 5 HOH A 59 459 132 HOH HOH . E 5 HOH A 60 460 77 HOH HOH . E 5 HOH A 61 461 54 HOH HOH . E 5 HOH A 62 462 58 HOH HOH . E 5 HOH A 63 463 218 HOH HOH . E 5 HOH A 64 464 44 HOH HOH . E 5 HOH A 65 465 143 HOH HOH . E 5 HOH A 66 466 68 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 55 HOH HOH . E 5 HOH A 69 469 88 HOH HOH . E 5 HOH A 70 470 1 HOH HOH . E 5 HOH A 71 471 3 HOH HOH . E 5 HOH A 72 472 234 HOH HOH . E 5 HOH A 73 473 87 HOH HOH . E 5 HOH A 74 474 168 HOH HOH . E 5 HOH A 75 475 158 HOH HOH . E 5 HOH A 76 476 184 HOH HOH . E 5 HOH A 77 477 164 HOH HOH . E 5 HOH A 78 478 108 HOH HOH . E 5 HOH A 79 479 19 HOH HOH . E 5 HOH A 80 480 61 HOH HOH . E 5 HOH A 81 481 140 HOH HOH . E 5 HOH A 82 482 277 HOH HOH . E 5 HOH A 83 483 193 HOH HOH . E 5 HOH A 84 484 123 HOH HOH . E 5 HOH A 85 485 214 HOH HOH . E 5 HOH A 86 486 113 HOH HOH . E 5 HOH A 87 487 43 HOH HOH . E 5 HOH A 88 488 107 HOH HOH . E 5 HOH A 89 489 31 HOH HOH . E 5 HOH A 90 490 186 HOH HOH . E 5 HOH A 91 491 282 HOH HOH . E 5 HOH A 92 492 274 HOH HOH . E 5 HOH A 93 493 13 HOH HOH . E 5 HOH A 94 494 105 HOH HOH . E 5 HOH A 95 495 247 HOH HOH . E 5 HOH A 96 496 195 HOH HOH . E 5 HOH A 97 497 62 HOH HOH . E 5 HOH A 98 498 124 HOH HOH . E 5 HOH A 99 499 270 HOH HOH . E 5 HOH A 100 500 180 HOH HOH . E 5 HOH A 101 501 38 HOH HOH . E 5 HOH A 102 502 256 HOH HOH . E 5 HOH A 103 503 32 HOH HOH . E 5 HOH A 104 504 172 HOH HOH . E 5 HOH A 105 505 20 HOH HOH . E 5 HOH A 106 506 56 HOH HOH . E 5 HOH A 107 507 197 HOH HOH . E 5 HOH A 108 508 213 HOH HOH . E 5 HOH A 109 509 99 HOH HOH . E 5 HOH A 110 510 22 HOH HOH . E 5 HOH A 111 511 25 HOH HOH . E 5 HOH A 112 512 133 HOH HOH . E 5 HOH A 113 513 4 HOH HOH . E 5 HOH A 114 514 92 HOH HOH . E 5 HOH A 115 515 72 HOH HOH . E 5 HOH A 116 516 215 HOH HOH . E 5 HOH A 117 517 35 HOH HOH . E 5 HOH A 118 518 65 HOH HOH . E 5 HOH A 119 519 98 HOH HOH . E 5 HOH A 120 520 2 HOH HOH . E 5 HOH A 121 521 78 HOH HOH . E 5 HOH A 122 522 159 HOH HOH . E 5 HOH A 123 523 53 HOH HOH . E 5 HOH A 124 524 52 HOH HOH . E 5 HOH A 125 525 135 HOH HOH . E 5 HOH A 126 526 232 HOH HOH . E 5 HOH A 127 527 116 HOH HOH . E 5 HOH A 128 528 162 HOH HOH . E 5 HOH A 129 529 66 HOH HOH . E 5 HOH A 130 530 131 HOH HOH . E 5 HOH A 131 531 264 HOH HOH . E 5 HOH A 132 532 27 HOH HOH . E 5 HOH A 133 533 51 HOH HOH . E 5 HOH A 134 534 111 HOH HOH . E 5 HOH A 135 535 50 HOH HOH . E 5 HOH A 136 536 101 HOH HOH . E 5 HOH A 137 537 79 HOH HOH . E 5 HOH A 138 538 240 HOH HOH . E 5 HOH A 139 539 181 HOH HOH . E 5 HOH A 140 540 17 HOH HOH . E 5 HOH A 141 541 165 HOH HOH . E 5 HOH A 142 542 176 HOH HOH . E 5 HOH A 143 543 125 HOH HOH . E 5 HOH A 144 544 40 HOH HOH . E 5 HOH A 145 545 198 HOH HOH . E 5 HOH A 146 546 118 HOH HOH . E 5 HOH A 147 547 183 HOH HOH . E 5 HOH A 148 548 227 HOH HOH . E 5 HOH A 149 549 10 HOH HOH . E 5 HOH A 150 550 73 HOH HOH . E 5 HOH A 151 551 46 HOH HOH . E 5 HOH A 152 552 41 HOH HOH . E 5 HOH A 153 553 42 HOH HOH . E 5 HOH A 154 554 80 HOH HOH . E 5 HOH A 155 555 12 HOH HOH . E 5 HOH A 156 556 207 HOH HOH . E 5 HOH A 157 557 167 HOH HOH . E 5 HOH A 158 558 9 HOH HOH . E 5 HOH A 159 559 37 HOH HOH . E 5 HOH A 160 560 16 HOH HOH . E 5 HOH A 161 561 271 HOH HOH . E 5 HOH A 162 562 15 HOH HOH . E 5 HOH A 163 563 265 HOH HOH . E 5 HOH A 164 564 84 HOH HOH . E 5 HOH A 165 565 122 HOH HOH . E 5 HOH A 166 566 169 HOH HOH . E 5 HOH A 167 567 273 HOH HOH . E 5 HOH A 168 568 248 HOH HOH . E 5 HOH A 169 569 49 HOH HOH . E 5 HOH A 170 570 59 HOH HOH . E 5 HOH A 171 571 110 HOH HOH . E 5 HOH A 172 572 208 HOH HOH . E 5 HOH A 173 573 106 HOH HOH . E 5 HOH A 174 574 97 HOH HOH . E 5 HOH A 175 575 134 HOH HOH . E 5 HOH A 176 576 48 HOH HOH . E 5 HOH A 177 577 156 HOH HOH . E 5 HOH A 178 578 74 HOH HOH . E 5 HOH A 179 579 36 HOH HOH . E 5 HOH A 180 580 26 HOH HOH . E 5 HOH A 181 581 45 HOH HOH . E 5 HOH A 182 582 6 HOH HOH . E 5 HOH A 183 583 137 HOH HOH . E 5 HOH A 184 584 217 HOH HOH . E 5 HOH A 185 585 173 HOH HOH . E 5 HOH A 186 586 225 HOH HOH . E 5 HOH A 187 587 254 HOH HOH . E 5 HOH A 188 588 272 HOH HOH . E 5 HOH A 189 589 205 HOH HOH . E 5 HOH A 190 590 178 HOH HOH . E 5 HOH A 191 591 149 HOH HOH . E 5 HOH A 192 592 128 HOH HOH . E 5 HOH A 193 593 196 HOH HOH . E 5 HOH A 194 594 192 HOH HOH . E 5 HOH A 195 595 259 HOH HOH . E 5 HOH A 196 596 154 HOH HOH . E 5 HOH A 197 597 231 HOH HOH . E 5 HOH A 198 598 267 HOH HOH . E 5 HOH A 199 599 109 HOH HOH . E 5 HOH A 200 600 177 HOH HOH . E 5 HOH A 201 601 104 HOH HOH . E 5 HOH A 202 602 216 HOH HOH . E 5 HOH A 203 603 175 HOH HOH . E 5 HOH A 204 604 102 HOH HOH . E 5 HOH A 205 605 287 HOH HOH . E 5 HOH A 206 606 28 HOH HOH . E 5 HOH A 207 607 147 HOH HOH . E 5 HOH A 208 608 266 HOH HOH . E 5 HOH A 209 609 253 HOH HOH . E 5 HOH A 210 610 235 HOH HOH . E 5 HOH A 211 611 228 HOH HOH . E 5 HOH A 212 612 219 HOH HOH . E 5 HOH A 213 613 233 HOH HOH . E 5 HOH A 214 614 96 HOH HOH . E 5 HOH A 215 615 252 HOH HOH . E 5 HOH A 216 616 185 HOH HOH . E 5 HOH A 217 617 160 HOH HOH . E 5 HOH A 218 618 212 HOH HOH . E 5 HOH A 219 619 141 HOH HOH . E 5 HOH A 220 620 263 HOH HOH . E 5 HOH A 221 621 241 HOH HOH . E 5 HOH A 222 622 117 HOH HOH . E 5 HOH A 223 623 245 HOH HOH . E 5 HOH A 224 624 276 HOH HOH . E 5 HOH A 225 625 171 HOH HOH . E 5 HOH A 226 626 209 HOH HOH . E 5 HOH A 227 627 222 HOH HOH . E 5 HOH A 228 628 129 HOH HOH . E 5 HOH A 229 629 286 HOH HOH . E 5 HOH A 230 630 114 HOH HOH . E 5 HOH A 231 631 163 HOH HOH . E 5 HOH A 232 632 285 HOH HOH . E 5 HOH A 233 633 191 HOH HOH . E 5 HOH A 234 634 29 HOH HOH . E 5 HOH A 235 635 268 HOH HOH . E 5 HOH A 236 636 115 HOH HOH . E 5 HOH A 237 637 243 HOH HOH . E 5 HOH A 238 638 199 HOH HOH . E 5 HOH A 239 639 261 HOH HOH . E 5 HOH A 240 640 157 HOH HOH . E 5 HOH A 241 641 75 HOH HOH . E 5 HOH A 242 642 179 HOH HOH . E 5 HOH A 243 643 226 HOH HOH . E 5 HOH A 244 644 142 HOH HOH . E 5 HOH A 245 645 246 HOH HOH . E 5 HOH A 246 646 275 HOH HOH . E 5 HOH A 247 647 64 HOH HOH . E 5 HOH A 248 648 33 HOH HOH . E 5 HOH A 249 649 82 HOH HOH . E 5 HOH A 250 650 155 HOH HOH . E 5 HOH A 251 651 144 HOH HOH . E 5 HOH A 252 652 119 HOH HOH . E 5 HOH A 253 653 151 HOH HOH . E 5 HOH A 254 654 237 HOH HOH . E 5 HOH A 255 655 203 HOH HOH . E 5 HOH A 256 656 210 HOH HOH . E 5 HOH A 257 657 262 HOH HOH . E 5 HOH A 258 658 170 HOH HOH . E 5 HOH A 259 659 89 HOH HOH . E 5 HOH A 260 660 223 HOH HOH . E 5 HOH A 261 661 279 HOH HOH . E 5 HOH A 262 662 229 HOH HOH . E 5 HOH A 263 663 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -14.586 _atom_site.Cartn_y -27.179 _atom_site.Cartn_z -9.466 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.21 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #