data_7CY8 # _model_server_result.job_id hJ1SGN8sWdnkIDrYnEbidA _model_server_result.datetime_utc '2024-11-24 06:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 7CY8 # _exptl.entry_id 7CY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.96 _cell.angle_gamma 90 _cell.entry_id 7CY8 _cell.length_a 154.488 _cell.length_b 125.646 _cell.length_c 64.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' 5CM 3 C 5CM 3 1_555 B P DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 C O3' DC 2 D DC 2 1_555 C P 5CM 3 D 5CM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale3 C O3' 5CM 3 D 5CM 3 1_555 C P DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A NE2 HIS 719 A HIS 345 1_555 H FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc2 A OD2 ASP 721 A ASP 347 1_555 H FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A NE2 HIS 771 A HIS 397 1_555 H FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 D O2 ASC . A ASC 601 1_555 H FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 H FE FE2 . A FE2 605 1_555 I O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? hydrog '5CM-DG MISPAIR' hydrog1 B O2 5CM 3 C 5CM 3 1_555 C N2 DG 8 D DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N1 DG 4 C DG 4 1_555 C N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N2 DG 4 C DG 4 1_555 C O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O6 DG 4 C DG 4 1_555 C N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DC 5 C DC 5 1_555 C N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N4 DC 5 C DC 5 1_555 C O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O2 DC 5 C DC 5 1_555 C N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 6 C DG 6 1_555 C N3 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 6 C DG 6 1_555 C O2 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 6 C DG 6 1_555 C N4 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 7 C DC 7 1_555 C N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 7 C DC 7 1_555 C O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 7 C DC 7 1_555 C N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 9 C DG 9 1_555 C N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 9 C DG 9 1_555 C O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 9 C DG 9 1_555 C N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog17 B N2 DG 10 C DG 10 1_555 C O2 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 290 n n C1 C2 EDO sing 291 n n C1 H11 EDO sing 292 n n C1 H12 EDO sing 293 n n O1 HO1 EDO sing 294 n n C2 O2 EDO sing 295 n n C2 H21 EDO sing 296 n n C2 H22 EDO sing 297 n n O2 HO2 EDO sing 298 n n # _atom_sites.entry_id 7CY8 _atom_sites.fract_transf_matrix[1][1] 0.006473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ASC A 1 601 1 ASC ASC . E 4 EDO A 1 602 1 EDO EDO . F 4 EDO A 1 603 2 EDO EDO . G 5 IPA A 1 604 1 IPA IOH . H 6 FE2 A 1 605 1 FE2 FE2 . I 7 HOH A 1 701 111 HOH HOH . I 7 HOH A 2 702 172 HOH HOH . I 7 HOH A 3 703 47 HOH HOH . I 7 HOH A 4 704 37 HOH HOH . I 7 HOH A 5 705 55 HOH HOH . I 7 HOH A 6 706 106 HOH HOH . I 7 HOH A 7 707 94 HOH HOH . I 7 HOH A 8 708 73 HOH HOH . I 7 HOH A 9 709 215 HOH HOH . I 7 HOH A 10 710 175 HOH HOH . I 7 HOH A 11 711 116 HOH HOH . I 7 HOH A 12 712 103 HOH HOH . I 7 HOH A 13 713 97 HOH HOH . I 7 HOH A 14 714 93 HOH HOH . I 7 HOH A 15 715 118 HOH HOH . I 7 HOH A 16 716 162 HOH HOH . I 7 HOH A 17 717 130 HOH HOH . I 7 HOH A 18 718 222 HOH HOH . I 7 HOH A 19 719 90 HOH HOH . I 7 HOH A 20 720 42 HOH HOH . I 7 HOH A 21 721 205 HOH HOH . I 7 HOH A 22 722 57 HOH HOH . I 7 HOH A 23 723 187 HOH HOH . I 7 HOH A 24 724 41 HOH HOH . I 7 HOH A 25 725 76 HOH HOH . I 7 HOH A 26 726 122 HOH HOH . I 7 HOH A 27 727 159 HOH HOH . I 7 HOH A 28 728 1 HOH HOH . I 7 HOH A 29 729 33 HOH HOH . I 7 HOH A 30 730 89 HOH HOH . I 7 HOH A 31 731 131 HOH HOH . I 7 HOH A 32 732 6 HOH HOH . I 7 HOH A 33 733 96 HOH HOH . I 7 HOH A 34 734 168 HOH HOH . I 7 HOH A 35 735 125 HOH HOH . I 7 HOH A 36 736 95 HOH HOH . I 7 HOH A 37 737 136 HOH HOH . I 7 HOH A 38 738 26 HOH HOH . I 7 HOH A 39 739 119 HOH HOH . I 7 HOH A 40 740 30 HOH HOH . I 7 HOH A 41 741 182 HOH HOH . I 7 HOH A 42 742 152 HOH HOH . I 7 HOH A 43 743 88 HOH HOH . I 7 HOH A 44 744 40 HOH HOH . I 7 HOH A 45 745 196 HOH HOH . I 7 HOH A 46 746 99 HOH HOH . I 7 HOH A 47 747 9 HOH HOH . I 7 HOH A 48 748 7 HOH HOH . I 7 HOH A 49 749 46 HOH HOH . I 7 HOH A 50 750 180 HOH HOH . I 7 HOH A 51 751 2 HOH HOH . I 7 HOH A 52 752 27 HOH HOH . I 7 HOH A 53 753 164 HOH HOH . I 7 HOH A 54 754 25 HOH HOH . I 7 HOH A 55 755 155 HOH HOH . I 7 HOH A 56 756 124 HOH HOH . I 7 HOH A 57 757 35 HOH HOH . I 7 HOH A 58 758 202 HOH HOH . I 7 HOH A 59 759 181 HOH HOH . I 7 HOH A 60 760 206 HOH HOH . I 7 HOH A 61 761 107 HOH HOH . I 7 HOH A 62 762 169 HOH HOH . I 7 HOH A 63 763 14 HOH HOH . I 7 HOH A 64 764 192 HOH HOH . I 7 HOH A 65 765 109 HOH HOH . I 7 HOH A 66 766 75 HOH HOH . I 7 HOH A 67 767 145 HOH HOH . I 7 HOH A 68 768 66 HOH HOH . I 7 HOH A 69 769 121 HOH HOH . I 7 HOH A 70 770 49 HOH HOH . I 7 HOH A 71 771 61 HOH HOH . I 7 HOH A 72 772 143 HOH HOH . I 7 HOH A 73 773 16 HOH HOH . I 7 HOH A 74 774 5 HOH HOH . I 7 HOH A 75 775 210 HOH HOH . I 7 HOH A 76 776 174 HOH HOH . I 7 HOH A 77 777 15 HOH HOH . I 7 HOH A 78 778 176 HOH HOH . I 7 HOH A 79 779 31 HOH HOH . I 7 HOH A 80 780 203 HOH HOH . I 7 HOH A 81 781 129 HOH HOH . I 7 HOH A 82 782 197 HOH HOH . I 7 HOH A 83 783 81 HOH HOH . I 7 HOH A 84 784 194 HOH HOH . I 7 HOH A 85 785 38 HOH HOH . I 7 HOH A 86 786 117 HOH HOH . I 7 HOH A 87 787 36 HOH HOH . I 7 HOH A 88 788 71 HOH HOH . I 7 HOH A 89 789 34 HOH HOH . I 7 HOH A 90 790 11 HOH HOH . I 7 HOH A 91 791 23 HOH HOH . I 7 HOH A 92 792 140 HOH HOH . I 7 HOH A 93 793 108 HOH HOH . I 7 HOH A 94 794 86 HOH HOH . I 7 HOH A 95 795 190 HOH HOH . I 7 HOH A 96 796 58 HOH HOH . I 7 HOH A 97 797 48 HOH HOH . I 7 HOH A 98 798 91 HOH HOH . I 7 HOH A 99 799 199 HOH HOH . I 7 HOH A 100 800 177 HOH HOH . I 7 HOH A 101 801 189 HOH HOH . I 7 HOH A 102 802 98 HOH HOH . I 7 HOH A 103 803 126 HOH HOH . I 7 HOH A 104 804 209 HOH HOH . I 7 HOH A 105 805 127 HOH HOH . I 7 HOH A 106 806 115 HOH HOH . I 7 HOH A 107 807 17 HOH HOH . I 7 HOH A 108 808 147 HOH HOH . I 7 HOH A 109 809 138 HOH HOH . I 7 HOH A 110 810 179 HOH HOH . I 7 HOH A 111 811 219 HOH HOH . I 7 HOH A 112 812 56 HOH HOH . I 7 HOH A 113 813 183 HOH HOH . I 7 HOH A 114 814 166 HOH HOH . I 7 HOH A 115 815 29 HOH HOH . I 7 HOH A 116 816 214 HOH HOH . I 7 HOH A 117 817 50 HOH HOH . I 7 HOH A 118 818 218 HOH HOH . I 7 HOH A 119 819 128 HOH HOH . I 7 HOH A 120 820 79 HOH HOH . I 7 HOH A 121 821 8 HOH HOH . I 7 HOH A 122 822 83 HOH HOH . I 7 HOH A 123 823 211 HOH HOH . I 7 HOH A 124 824 185 HOH HOH . I 7 HOH A 125 825 184 HOH HOH . I 7 HOH A 126 826 220 HOH HOH . I 7 HOH A 127 827 87 HOH HOH . I 7 HOH A 128 828 22 HOH HOH . I 7 HOH A 129 829 149 HOH HOH . I 7 HOH A 130 830 133 HOH HOH . I 7 HOH A 131 831 70 HOH HOH . I 7 HOH A 132 832 104 HOH HOH . I 7 HOH A 133 833 60 HOH HOH . I 7 HOH A 134 834 141 HOH HOH . I 7 HOH A 135 835 72 HOH HOH . I 7 HOH A 136 836 92 HOH HOH . I 7 HOH A 137 837 201 HOH HOH . I 7 HOH A 138 838 43 HOH HOH . I 7 HOH A 139 839 21 HOH HOH . I 7 HOH A 140 840 123 HOH HOH . I 7 HOH A 141 841 178 HOH HOH . I 7 HOH A 142 842 139 HOH HOH . I 7 HOH A 143 843 198 HOH HOH . I 7 HOH A 144 844 217 HOH HOH . I 7 HOH A 145 845 39 HOH HOH . I 7 HOH A 146 846 18 HOH HOH . I 7 HOH A 147 847 188 HOH HOH . I 7 HOH A 148 848 84 HOH HOH . I 7 HOH A 149 849 54 HOH HOH . I 7 HOH A 150 850 148 HOH HOH . I 7 HOH A 151 851 153 HOH HOH . I 7 HOH A 152 852 171 HOH HOH . I 7 HOH A 153 853 221 HOH HOH . I 7 HOH A 154 854 173 HOH HOH . I 7 HOH A 155 855 146 HOH HOH . I 7 HOH A 156 856 105 HOH HOH . I 7 HOH A 157 857 207 HOH HOH . I 7 HOH A 158 858 44 HOH HOH . I 7 HOH A 159 859 191 HOH HOH . I 7 HOH A 160 860 113 HOH HOH . I 7 HOH A 161 861 52 HOH HOH . I 7 HOH A 162 862 85 HOH HOH . I 7 HOH A 163 863 45 HOH HOH . I 7 HOH A 164 864 165 HOH HOH . I 7 HOH A 165 865 82 HOH HOH . I 7 HOH A 166 866 193 HOH HOH . I 7 HOH A 167 867 195 HOH HOH . I 7 HOH A 168 868 142 HOH HOH . I 7 HOH A 169 869 216 HOH HOH . I 7 HOH A 170 870 4 HOH HOH . I 7 HOH A 171 871 28 HOH HOH . I 7 HOH A 172 872 64 HOH HOH . I 7 HOH A 173 873 137 HOH HOH . I 7 HOH A 174 874 213 HOH HOH . I 7 HOH A 175 875 67 HOH HOH . I 7 HOH A 176 876 114 HOH HOH . I 7 HOH A 177 877 144 HOH HOH . I 7 HOH A 178 878 19 HOH HOH . I 7 HOH A 179 879 74 HOH HOH . I 7 HOH A 180 880 150 HOH HOH . I 7 HOH A 181 881 200 HOH HOH . I 7 HOH A 182 882 208 HOH HOH . I 7 HOH A 183 883 110 HOH HOH . I 7 HOH A 184 884 163 HOH HOH . I 7 HOH A 185 885 112 HOH HOH . I 7 HOH A 186 886 68 HOH HOH . I 7 HOH A 187 887 167 HOH HOH . I 7 HOH A 188 888 134 HOH HOH . I 7 HOH A 189 889 51 HOH HOH . I 7 HOH A 190 890 32 HOH HOH . I 7 HOH A 191 891 77 HOH HOH . I 7 HOH A 192 892 80 HOH HOH . I 7 HOH A 193 893 59 HOH HOH . I 7 HOH A 194 894 20 HOH HOH . I 7 HOH A 195 895 158 HOH HOH . J 7 HOH C 1 101 12 HOH HOH . J 7 HOH C 2 102 212 HOH HOH . K 7 HOH D 1 101 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 457.204 25.503 132.889 1 57.7 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . E 4 455.957 25.437 133.596 1 56.79 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . E 4 457.674 26.956 132.827 1 61.87 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . E 4 459.018 27.086 132.326 1 64.53 ? O2 EDO 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #