data_7CYB # _model_server_result.job_id QaoD4wUdgg4gS6U4wXtRaQ _model_server_result.datetime_utc '2024-11-22 07:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7CYB # _exptl.entry_id 7CYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.34 _cell.angle_gamma 90 _cell.entry_id 7CYB _cell.length_a 33.407 _cell.length_b 58.913 _cell.length_c 40.701 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7CYB _atom_sites.fract_transf_matrix[1][1] 0.029934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012918 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 201 GOL LIG . C 2 GOL A 1 202 301 GOL LIG . D 3 HOH A 1 301 106 HOH HOH . D 3 HOH A 2 302 16 HOH HOH . D 3 HOH A 3 303 65 HOH HOH . D 3 HOH A 4 304 131 HOH HOH . D 3 HOH A 5 305 39 HOH HOH . D 3 HOH A 6 306 117 HOH HOH . D 3 HOH A 7 307 103 HOH HOH . D 3 HOH A 8 308 163 HOH HOH . D 3 HOH A 9 309 133 HOH HOH . D 3 HOH A 10 310 118 HOH HOH . D 3 HOH A 11 311 100 HOH HOH . D 3 HOH A 12 312 48 HOH HOH . D 3 HOH A 13 313 173 HOH HOH . D 3 HOH A 14 314 142 HOH HOH . D 3 HOH A 15 315 99 HOH HOH . D 3 HOH A 16 316 55 HOH HOH . D 3 HOH A 17 317 123 HOH HOH . D 3 HOH A 18 318 73 HOH HOH . D 3 HOH A 19 319 38 HOH HOH . D 3 HOH A 20 320 11 HOH HOH . D 3 HOH A 21 321 51 HOH HOH . D 3 HOH A 22 322 30 HOH HOH . D 3 HOH A 23 323 156 HOH HOH . D 3 HOH A 24 324 1 HOH HOH . D 3 HOH A 25 325 28 HOH HOH . D 3 HOH A 26 326 19 HOH HOH . D 3 HOH A 27 327 112 HOH HOH . D 3 HOH A 28 328 80 HOH HOH . D 3 HOH A 29 329 64 HOH HOH . D 3 HOH A 30 330 45 HOH HOH . D 3 HOH A 31 331 34 HOH HOH . D 3 HOH A 32 332 101 HOH HOH . D 3 HOH A 33 333 41 HOH HOH . D 3 HOH A 34 334 14 HOH HOH . D 3 HOH A 35 335 8 HOH HOH . D 3 HOH A 36 336 61 HOH HOH . D 3 HOH A 37 337 44 HOH HOH . D 3 HOH A 38 338 49 HOH HOH . D 3 HOH A 39 339 5 HOH HOH . D 3 HOH A 40 340 17 HOH HOH . D 3 HOH A 41 341 93 HOH HOH . D 3 HOH A 42 342 25 HOH HOH . D 3 HOH A 43 343 23 HOH HOH . D 3 HOH A 44 344 77 HOH HOH . D 3 HOH A 45 345 98 HOH HOH . D 3 HOH A 46 346 157 HOH HOH . D 3 HOH A 47 347 177 HOH HOH . D 3 HOH A 48 348 82 HOH HOH . D 3 HOH A 49 349 4 HOH HOH . D 3 HOH A 50 350 12 HOH HOH . D 3 HOH A 51 351 56 HOH HOH . D 3 HOH A 52 352 20 HOH HOH . D 3 HOH A 53 353 168 HOH HOH . D 3 HOH A 54 354 27 HOH HOH . D 3 HOH A 55 355 29 HOH HOH . D 3 HOH A 56 356 36 HOH HOH . D 3 HOH A 57 357 35 HOH HOH . D 3 HOH A 58 358 135 HOH HOH . D 3 HOH A 59 359 32 HOH HOH . D 3 HOH A 60 360 128 HOH HOH . D 3 HOH A 61 361 126 HOH HOH . D 3 HOH A 62 362 159 HOH HOH . D 3 HOH A 63 363 63 HOH HOH . D 3 HOH A 64 364 97 HOH HOH . D 3 HOH A 65 365 21 HOH HOH . D 3 HOH A 66 366 37 HOH HOH . D 3 HOH A 67 367 147 HOH HOH . D 3 HOH A 68 368 47 HOH HOH . D 3 HOH A 69 369 92 HOH HOH . D 3 HOH A 70 370 79 HOH HOH . D 3 HOH A 71 371 9 HOH HOH . D 3 HOH A 72 372 69 HOH HOH . D 3 HOH A 73 373 108 HOH HOH . D 3 HOH A 74 374 59 HOH HOH . D 3 HOH A 75 375 40 HOH HOH . D 3 HOH A 76 376 6 HOH HOH . D 3 HOH A 77 377 136 HOH HOH . D 3 HOH A 78 378 150 HOH HOH . D 3 HOH A 79 379 33 HOH HOH . D 3 HOH A 80 380 31 HOH HOH . D 3 HOH A 81 381 18 HOH HOH . D 3 HOH A 82 382 89 HOH HOH . D 3 HOH A 83 383 83 HOH HOH . D 3 HOH A 84 384 84 HOH HOH . D 3 HOH A 85 385 160 HOH HOH . D 3 HOH A 86 386 13 HOH HOH . D 3 HOH A 87 387 53 HOH HOH . D 3 HOH A 88 388 52 HOH HOH . D 3 HOH A 89 389 2 HOH HOH . D 3 HOH A 90 390 174 HOH HOH . D 3 HOH A 91 391 137 HOH HOH . D 3 HOH A 92 392 15 HOH HOH . D 3 HOH A 93 393 105 HOH HOH . D 3 HOH A 94 394 24 HOH HOH . D 3 HOH A 95 395 96 HOH HOH . D 3 HOH A 96 396 119 HOH HOH . D 3 HOH A 97 397 50 HOH HOH . D 3 HOH A 98 398 26 HOH HOH . D 3 HOH A 99 399 158 HOH HOH . D 3 HOH A 100 400 60 HOH HOH . D 3 HOH A 101 401 146 HOH HOH . D 3 HOH A 102 402 86 HOH HOH . D 3 HOH A 103 403 78 HOH HOH . D 3 HOH A 104 404 144 HOH HOH . D 3 HOH A 105 405 179 HOH HOH . D 3 HOH A 106 406 109 HOH HOH . D 3 HOH A 107 407 180 HOH HOH . D 3 HOH A 108 408 149 HOH HOH . D 3 HOH A 109 409 62 HOH HOH . D 3 HOH A 110 410 95 HOH HOH . D 3 HOH A 111 411 54 HOH HOH . D 3 HOH A 112 412 22 HOH HOH . D 3 HOH A 113 413 164 HOH HOH . D 3 HOH A 114 414 107 HOH HOH . D 3 HOH A 115 415 111 HOH HOH . D 3 HOH A 116 416 85 HOH HOH . D 3 HOH A 117 417 161 HOH HOH . D 3 HOH A 118 418 3 HOH HOH . D 3 HOH A 119 419 87 HOH HOH . D 3 HOH A 120 420 58 HOH HOH . D 3 HOH A 121 421 125 HOH HOH . D 3 HOH A 122 422 7 HOH HOH . D 3 HOH A 123 423 127 HOH HOH . D 3 HOH A 124 424 181 HOH HOH . D 3 HOH A 125 425 113 HOH HOH . D 3 HOH A 126 426 66 HOH HOH . D 3 HOH A 127 427 169 HOH HOH . D 3 HOH A 128 428 152 HOH HOH . D 3 HOH A 129 429 162 HOH HOH . D 3 HOH A 130 430 178 HOH HOH . D 3 HOH A 131 431 115 HOH HOH . D 3 HOH A 132 432 145 HOH HOH . D 3 HOH A 133 433 71 HOH HOH . D 3 HOH A 134 434 68 HOH HOH . D 3 HOH A 135 435 70 HOH HOH . D 3 HOH A 136 436 76 HOH HOH . D 3 HOH A 137 437 104 HOH HOH . D 3 HOH A 138 438 46 HOH HOH . D 3 HOH A 139 439 42 HOH HOH . D 3 HOH A 140 440 122 HOH HOH . D 3 HOH A 141 441 43 HOH HOH . D 3 HOH A 142 442 81 HOH HOH . D 3 HOH A 143 443 143 HOH HOH . D 3 HOH A 144 444 171 HOH HOH . D 3 HOH A 145 445 120 HOH HOH . D 3 HOH A 146 446 121 HOH HOH . D 3 HOH A 147 447 116 HOH HOH . D 3 HOH A 148 448 170 HOH HOH . D 3 HOH A 149 449 134 HOH HOH . D 3 HOH A 150 450 176 HOH HOH . D 3 HOH A 151 451 124 HOH HOH . D 3 HOH A 152 452 155 HOH HOH . D 3 HOH A 153 453 90 HOH HOH . D 3 HOH A 154 454 148 HOH HOH . D 3 HOH A 155 455 114 HOH HOH . D 3 HOH A 156 456 75 HOH HOH . D 3 HOH A 157 457 88 HOH HOH . D 3 HOH A 158 458 140 HOH HOH . D 3 HOH A 159 459 130 HOH HOH . D 3 HOH A 160 460 132 HOH HOH . D 3 HOH A 161 461 102 HOH HOH . D 3 HOH A 162 462 165 HOH HOH . D 3 HOH A 163 463 57 HOH HOH . D 3 HOH A 164 464 110 HOH HOH . D 3 HOH A 165 465 139 HOH HOH . D 3 HOH A 166 466 72 HOH HOH . D 3 HOH A 167 467 172 HOH HOH . D 3 HOH A 168 468 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -16.004 3.42 8.254 1 19.05 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 2 -16.274 2.912 9.541 1 17.47 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 2 -15.169 4.679 8.408 1 19.86 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 2 -14.985 5.231 7.134 1 25.02 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 2 -15.856 5.753 9.205 1 24.31 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 2 -17.073 5.949 8.569 1 20.77 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . C 2 -15.513 2.762 7.738 1 22.87 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . C 2 -16.838 3.632 7.805 1 22.87 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . C 2 -16.552 2.111 9.482 1 20.98 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . C 2 -14.325 4.433 8.816 1 23.84 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . C 2 -14.231 4.986 6.826 1 30.03 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . C 2 -15.332 6.57 9.196 1 29.18 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . C 2 -15.993 5.463 10.12 1 29.18 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . C 2 -17.512 6.554 8.976 1 24.94 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 137 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 651 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #