data_7CZ4
#
_model_server_result.job_id            9ZbpNw04k8Tr7CJ1UsXLPQ 
_model_server_result.datetime_utc      '2025-04-22 20:49:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7CZ4 
#
_exptl.entry_id    7CZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CZ4 
_cell.length_a            84.736 
_cell.length_b            84.736 
_cell.length_c            143.242 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7CZ4 
_atom_sites.fract_transf_matrix[1][1]    0.011801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 APR A 1 201 201 APR APR . 
D 2 APR B 1 201 201 APR APR . 
E 3 HOH A 1 301 6 HOH HOH . 
E 3 HOH A 2 302 23 HOH HOH . 
E 3 HOH A 3 303 24 HOH HOH . 
E 3 HOH A 4 304 13 HOH HOH . 
E 3 HOH A 5 305 37 HOH HOH . 
E 3 HOH A 6 306 62 HOH HOH . 
E 3 HOH A 7 307 54 HOH HOH . 
E 3 HOH A 8 308 1 HOH HOH . 
E 3 HOH A 9 309 53 HOH HOH . 
E 3 HOH A 10 310 49 HOH HOH . 
E 3 HOH A 11 311 55 HOH HOH . 
E 3 HOH A 12 312 47 HOH HOH . 
E 3 HOH A 13 313 51 HOH HOH . 
E 3 HOH A 14 314 17 HOH HOH . 
E 3 HOH A 15 315 21 HOH HOH . 
E 3 HOH A 16 316 30 HOH HOH . 
E 3 HOH A 17 317 50 HOH HOH . 
E 3 HOH A 18 318 39 HOH HOH . 
E 3 HOH A 19 319 22 HOH HOH . 
E 3 HOH A 20 320 38 HOH HOH . 
E 3 HOH A 21 321 43 HOH HOH . 
E 3 HOH A 22 322 32 HOH HOH . 
E 3 HOH A 23 323 57 HOH HOH . 
E 3 HOH A 24 324 25 HOH HOH . 
E 3 HOH A 25 325 20 HOH HOH . 
E 3 HOH A 26 326 29 HOH HOH . 
E 3 HOH A 27 327 33 HOH HOH . 
E 3 HOH A 28 328 40 HOH HOH . 
E 3 HOH A 29 329 63 HOH HOH . 
F 3 HOH B 1 301 19 HOH HOH . 
F 3 HOH B 2 302 44 HOH HOH . 
F 3 HOH B 3 303 42 HOH HOH . 
F 3 HOH B 4 304 2 HOH HOH . 
F 3 HOH B 5 305 12 HOH HOH . 
F 3 HOH B 6 306 45 HOH HOH . 
F 3 HOH B 7 307 15 HOH HOH . 
F 3 HOH B 8 308 10 HOH HOH . 
F 3 HOH B 9 309 52 HOH HOH . 
F 3 HOH B 10 310 9 HOH HOH . 
F 3 HOH B 11 311 16 HOH HOH . 
F 3 HOH B 12 312 3 HOH HOH . 
F 3 HOH B 13 313 7 HOH HOH . 
F 3 HOH B 14 314 26 HOH HOH . 
F 3 HOH B 15 315 64 HOH HOH . 
F 3 HOH B 16 316 5 HOH HOH . 
F 3 HOH B 17 317 60 HOH HOH . 
F 3 HOH B 18 318 8 HOH HOH . 
F 3 HOH B 19 319 34 HOH HOH . 
F 3 HOH B 20 320 11 HOH HOH . 
F 3 HOH B 21 321 61 HOH HOH . 
F 3 HOH B 22 322 27 HOH HOH . 
F 3 HOH B 23 323 46 HOH HOH . 
F 3 HOH B 24 324 48 HOH HOH . 
F 3 HOH B 25 325 36 HOH HOH . 
F 3 HOH B 26 326 28 HOH HOH . 
F 3 HOH B 27 327 59 HOH HOH . 
F 3 HOH B 28 328 41 HOH HOH . 
F 3 HOH B 29 329 31 HOH HOH . 
F 3 HOH B 30 330 14 HOH HOH . 
F 3 HOH B 31 331 4 HOH HOH . 
F 3 HOH B 32 332 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . C 2 18.837 0.104 -11.882 1 69.57 ? N1 APR 201 A 1 
HETATM 2 C C2 APR . . . C 2 19.268 0.9 -10.893 1 75.09 ? C2 APR 201 A 1 
HETATM 3 N N3 APR . . . C 2 19.845 0.579 -9.738 1 77.69 ? N3 APR 201 A 1 
HETATM 4 C C4 APR . . . C 2 19.954 -0.753 -9.631 1 84.11 ? C4 APR 201 A 1 
HETATM 5 C C5 APR . . . C 2 19.534 -1.697 -10.541 1 85.44 ? C5 APR 201 A 1 
HETATM 6 C C6 APR . . . C 2 18.93 -1.233 -11.722 1 72.85 ? C6 APR 201 A 1 
HETATM 7 N N6 APR . . . C 2 18.495 -2.021 -12.699 1 59.94 ? N6 APR 201 A 1 
HETATM 8 N N7 APR . . . C 2 19.817 -2.973 -10.072 1 84.47 ? N7 APR 201 A 1 
HETATM 9 C C8 APR . . . C 2 20.396 -2.784 -8.908 1 87.2 ? C8 APR 201 A 1 
HETATM 10 N N9 APR . . . C 2 20.501 -1.448 -8.588 1 92.1 ? N9 APR 201 A 1 
HETATM 11 C C1' APR . . . C 2 21.096 -0.86 -7.402 1 103.14 ? C1' APR 201 A 1 
HETATM 12 C C2' APR . . . C 2 21.207 -1.81 -6.211 1 104.98 ? C2' APR 201 A 1 
HETATM 13 O O2' APR . . . C 2 20.009 -1.884 -5.474 1 101.76 ? O2' APR 201 A 1 
HETATM 14 C C3' APR . . . C 2 22.322 -1.124 -5.423 1 97.9 ? C3' APR 201 A 1 
HETATM 15 O O3' APR . . . C 2 21.65 -0.092 -4.715 1 90.67 ? O3' APR 201 A 1 
HETATM 16 O O4' APR . . . C 2 22.418 -0.481 -7.713 1 102.13 ? O4' APR 201 A 1 
HETATM 17 C C4' APR . . . C 2 23.263 -0.658 -6.547 1 97.2 ? C4' APR 201 A 1 
HETATM 18 C C5' APR . . . C 2 24.383 -1.601 -6.926 1 96.26 ? C5' APR 201 A 1 
HETATM 19 O O5' APR . . . C 2 23.88 -2.964 -7.011 1 100.32 ? O5' APR 201 A 1 
HETATM 20 P PA APR . . . C 2 24.731 -4.049 -7.83 1 102.48 ? PA APR 201 A 1 
HETATM 21 O O1A APR . . . C 2 24.509 -3.898 -9.298 1 107.59 -1 O1A APR 201 A 1 
HETATM 22 O O2A APR . . . C 2 24.524 -5.404 -7.238 1 112.21 ? O2A APR 201 A 1 
HETATM 23 O O3A APR . . . C 2 26.211 -3.543 -7.519 1 105.86 ? O3A APR 201 A 1 
HETATM 24 P PB APR . . . C 2 27.414 -4.083 -6.614 1 90.68 ? PB APR 201 A 1 
HETATM 25 O O1B APR . . . C 2 28.624 -3.265 -6.922 1 93.45 -1 O1B APR 201 A 1 
HETATM 26 O O2B APR . . . C 2 26.948 -4.187 -5.198 1 86.25 ? O2B APR 201 A 1 
HETATM 27 O O5D APR . . . C 2 27.581 -5.555 -7.214 1 99.64 ? O5D APR 201 A 1 
HETATM 28 C C5D APR . . . C 2 28.659 -5.927 -8.093 1 98.74 ? C5D APR 201 A 1 
HETATM 29 O O4D APR . . . C 2 27.037 -7.421 -9.024 1 105.51 ? O4D APR 201 A 1 
HETATM 30 O O1D APR . . . C 2 25.96 -7.753 -11.026 1 112.98 ? O1D APR 201 A 1 
HETATM 31 C C1D APR . . . C 2 27.038 -8.116 -10.253 1 106.66 ? C1D APR 201 A 1 
HETATM 32 O O2D APR . . . C 2 28.76 -8.477 -11.998 1 97.37 ? O2D APR 201 A 1 
HETATM 33 C C2D APR . . . C 2 28.365 -7.7 -10.891 1 100.45 ? C2D APR 201 A 1 
HETATM 34 O O3D APR . . . C 2 29.548 -9.264 -9.499 1 100.07 ? O3D APR 201 A 1 
HETATM 35 C C3D APR . . . C 2 29.279 -7.882 -9.687 1 99.42 ? C3D APR 201 A 1 
HETATM 36 C C4D APR . . . C 2 28.402 -7.345 -8.546 1 100.81 ? C4D APR 201 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#